Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29249 Davidia involucrata HOM05D006582 ORTHO05D008313 1.7e-160 569.3 295 100.0
Hma1.2p1_0415F.1_g148010 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 3.3e-148 528.5 295 90.2
CSS0043436 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 8.5e-144 513.8 295 89.2
Actinidia34241 Actinidia chinensis HOM05D006582 ORTHO05D008313 2.5e-143 512.3 295 88.1
CSS0003388 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 2.5e-143 512.3 295 88.8
Rhsim03G0211600 Rhododendron simsii HOM05D006582 ORTHO05D008313 5.2e-141 504.6 295 86.1
Lj3A900T44 Lonicera japonica HOM05D006582 ORTHO05D008313 2.2e-136 489.2 297 83.8
SGA_v2.0_scaffold18G08434 Striga asiatica HOM05D006582 ORTHO05D008313 1.5e-135 486.5 295 82.7
GSVIVG01038593001 Vitis vinifera HOM05D006582 ORTHO05D008313 1.5e-135 486.5 299 82.9
PGSC0003DMG402018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 1.6e-134 483.0 295 83.1
Sopen03g022560 Solanum pennellii HOM05D006582 ORTHO05D008313 2.1e-134 482.6 295 82.7
Solyc03g082820.3 Solanum lycopersicum HOM05D006582 ORTHO05D008313 6.1e-134 481.1 295 82.0
Migut.F00182 Erythranthe guttata HOM05D006582 ORTHO05D008313 1.4e-133 479.9 295 82.4
SalBow4G1606 Salvia bowleyana HOM05D006582 ORTHO05D008313 6.7e-133 477.6 295 82.0
RcHm_v2.0_Chr1g0355871 Rosa chinensis HOM05D006582 ORTHO05D008313 8.8e-133 477.2 301 82.1
MD07G1135900 Malus domestica HOM05D006582 ORTHO05D008313 4.4e-132 474.9 300 81.3
Cfa016201 Carpinus fangiana HOM05D006582 ORTHO05D008313 5.7e-132 474.6 303 81.8
TAR374G0762 Trochodendron aralioides HOM05D006582 ORTHO05D008313 7.5e-132 474.2 298 81.2
MELO3C005901.2 Cucumis melo HOM05D006582 ORTHO05D008313 9.7e-132 473.8 305 80.3
CsaV3_5G000310 Cucumis sativus L. HOM05D006582 ORTHO05D008313 1.3e-131 473.4 305 80.0
FAN03G0584 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.7e-131 473.0 300 82.0
FAN06G3963 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.7e-131 473.0 300 81.7
vmacro06405 Vaccinium macrocarpon HOM05D006582 ORTHO05D008313 2.2e-131 472.6 341 73.0
FvH4_7g14460 Fragaria vesca HOM05D006582 ORTHO05D008313 2.8e-131 472.2 300 81.7
FAN06G2233 Fragaria x ananassa HOM05D006582 ORTHO05D008313 2.8e-131 472.2 300 81.7
Peaxi162Scf00740g00331 Petunia axillaris HOM05D006582 ORTHO05D008313 2.8e-131 472.2 295 81.7
Prupe.2G171600 Prunus persica HOM05D006582 ORTHO05D008313 2.8e-131 472.2 301 81.1
Lsat_1_v5_gn_2_135281 Lactuca sativa HOM05D006582 ORTHO05D008313 3.7e-131 471.9 300 80.7
Ciclev10021376m.g Citrus clementina HOM05D006582 ORTHO05D008313 8.2e-131 470.7 300 80.0
PGR142G1628 Punica granatum HOM05D006582 ORTHO05D008313 1.1e-130 470.3 303 79.2
CiPaw.06G044200 Carya illinoinensis HOM05D006582 ORTHO05D008313 1.4e-130 469.9 302 80.1
FAN01G0099 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.4e-130 469.9 300 81.3
Sed0002968 Sechium edule HOM05D006582 ORTHO05D008313 2.4e-130 469.2 306 79.4
Thecc.03G203200 Theobroma cacao HOM05D006582 ORTHO05D008313 7.0e-130 467.6 312 78.5
THA.LOC104811904 Tarenaya hassleriana HOM05D006582 ORTHO05D008313 2.7e-129 465.7 304 77.3
Nn6g34389 Nelumbo nucifera HOM05D006582 ORTHO05D008313 1.3e-128 463.4 299 80.3
CANSAT21G1996 Cannabis sativa HOM05D006582 ORTHO05D008313 3.8e-128 461.8 302 80.5
Cc04_g16300 Coffea canephora HOM05D006582 ORTHO05D008313 3.8e-128 461.8 295 80.3
Duzib068G0295 Durio zibethinus HOM05D006582 ORTHO05D008313 1.9e-127 459.5 312 77.2
CAN.G481.47 Capsicum annuum HOM05D006582 ORTHO05D008313 7.2e-127 457.6 297 79.5
Haze_00249 Corylus avellana HOM05D006582 ORTHO05D008313 1.6e-126 456.4 331 74.6
Haze_00255 Corylus avellana HOM05D006582 ORTHO05D008313 1.6e-126 456.4 331 74.6
QL09p007748 Quercus lobata HOM05D006582 ORTHO05D008313 1.6e-126 456.4 308 76.6
unitig_747.g21740 Utricularia gibba HOM05D006582 ORTHO05D008313 2.1e-126 456.1 295 77.3
Gohir.D08G113800 Gossypium hirsutum HOM05D006582 ORTHO05D008313 6.1e-126 454.5 312 75.6
TWI60G0746 Tripterygium wilfordii HOM05D006582 ORTHO05D008313 6.1e-126 454.5 314 78.0
Gorai.004G122700 Gossypium raimondii HOM05D006582 ORTHO05D008313 1.4e-125 453.4 274 84.3
HanXRQChr07g0206401 Helianthus annuus HOM05D006582 ORTHO05D008313 1.5e-124 449.9 294 79.3
Manes.01G148600 Manihot esculenta HOM05D006582 ORTHO05D008313 2.6e-124 449.1 301 78.1
Aqoxy7G00041 Aquilegia oxysepala HOM05D006582 ORTHO05D008313 3.4e-124 448.7 296 77.7
Sabra15G0024300 Salix brachista HOM05D006582 ORTHO05D008313 4.4e-124 448.4 309 75.4
Sc19g0000750 Simmondsia chinensis HOM05D006582 ORTHO05D008313 9.8e-124 447.2 305 75.4
COL.COLO4_16812 Corchorus olitorius HOM05D006582 ORTHO05D008313 3.7e-123 445.3 313 75.1
Phvul.011G018800 Phaseolus vulgaris HOM05D006582 ORTHO05D008313 1.1e-122 443.7 301 77.7
Ah.07g205040 Amaranthus hybridus HOM05D006582 ORTHO05D008313 1.4e-122 443.4 273 80.2
EL10Ac3g05224 Beta vulgaris HOM05D006582 ORTHO05D008313 1.4e-122 443.4 273 79.9
AUR62035580 Chenopodium quinoa HOM05D006582 ORTHO05D008313 2.4e-122 442.6 286 77.6
VMungo1127G0470 Vigna mungo HOM05D006582 ORTHO05D008313 4.1e-122 441.8 300 77.3
Lj3g0025694 Lotus japonicus HOM05D006582 ORTHO05D008313 5.4e-122 441.4 301 78.7
Aa31LG3G9690 Aethionema arabicum HOM05D006582 ORTHO05D008313 7.0e-122 441.0 306 72.5
Glyma.11G108800 Glycine max HOM05D006582 ORTHO05D008313 9.1e-122 440.7 310 76.1
AUR62006048 Chenopodium quinoa HOM05D006582 ORTHO05D008313 1.6e-121 439.9 269 80.3
BcaNung01623 Brassica carinata HOM05D006582 ORTHO05D008313 2.7e-121 439.1 306 73.2
Thhalv10025816m.g Eutrema salsugineum HOM05D006582 ORTHO05D008313 3.5e-121 438.7 306 72.5
AT4G27750 Arabidopsis thaliana HOM05D006582 ORTHO05D008313 4.5e-121 438.3 306 72.9
BcaC09g50542 Brassica carinata HOM05D006582 ORTHO05D008313 4.5e-121 438.3 306 72.9
A01p19210 Brassica napus HOM05D006582 ORTHO05D008313 5.9e-121 438.0 306 72.9
C01p24110 Brassica napus HOM05D006582 ORTHO05D008313 1.0e-120 437.2 306 72.9
BraA01t01863Z Brassica rapa HOM05D006582 ORTHO05D008313 1.0e-120 437.2 306 72.9
Hund11634 Selenicereus undatus HOM05D006582 ORTHO05D008313 1.0e-120 437.2 271 79.0
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 1.7e-120 436.4 302 76.2
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 1.7e-120 436.4 302 76.2
CARHR235480 Cardamine hirsuta HOM05D006582 ORTHO05D008313 2.3e-120 436.0 306 71.9
Sp7g25720 Schrenkiella parvula HOM05D006582 ORTHO05D008313 5.0e-120 434.9 306 71.9
AL7G24900 Arabidopsis lyrata HOM05D006582 ORTHO05D008313 1.5e-119 433.3 307 71.0
Carub.0007s1306 Capsella rubella HOM05D006582 ORTHO05D008313 1.5e-119 433.3 306 70.9
Ca_18952_v3 Cicer arietinum L. HOM05D006582 ORTHO05D008313 2.5e-119 432.6 305 75.1
Glyma.12G016600 Glycine max HOM05D006582 ORTHO05D008313 7.2e-119 431.0 302 76.8
Medtr4g078140 Medicago truncatula HOM05D006582 ORTHO05D008313 9.5e-119 430.6 307 73.9
TPR.G19615 Trifolium pratense HOM05D006582 ORTHO05D008313 1.2e-118 430.3 305 73.4
Psat7g170040 Pisum sativum HOM05D006582 ORTHO05D008313 2.8e-118 429.1 305 74.1
PSO782G4269 Papaver somniferum HOM05D006582 ORTHO05D008313 4.7e-118 428.3 296 73.3
BolC1t02368H Brassica oleracea HOM05D006582 ORTHO05D008313 8.9e-117 424.1 335 66.9
Lalb_Chr03g0024361 Lupinus albus HOM05D006582 ORTHO05D008313 5.7e-116 421.4 304 72.7
DCAR_008960 Daucus carota HOM05D006582 ORTHO05D008313 9.8e-116 420.6 284 76.4
MD01G1064000 Malus domestica HOM05D006582 ORTHO05D008313 1.3e-115 420.2 319 71.8
SGA_v2.0_scaffold44G16825 Striga asiatica HOM05D006582 ORTHO05D008313 2.8e-115 419.1 295 71.2
Nitab4.5_0002780g0150 Nicotiana tabacum HOM05D006582 ORTHO05D008313 5.9e-113 411.4 314 71.0
ECA238G3804 Erigeron canadensis HOM05D006582 ORTHO05D008313 1.1e-111 407.1 324 68.5
Hund21029 Selenicereus undatus HOM05D006582 ORTHO05D008313 7.3e-111 404.4 290 72.1
Nitab4.5_0007755g0010 Nicotiana tabacum HOM05D006582 ORTHO05D008313 3.6e-110 402.1 336 66.4
MBI04_g35986_MAGBIO Magnolia biondii HOM05D006582 ORTHO05D008313 3.1e-109 399.1 297 71.7
BcaNung01628 Brassica carinata HOM05D006582 ORTHO05D008313 2.9e-107 392.5 306 68.0
Hma1.2p1_0415F.1_g148020 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 2.0e-105 386.3 220 88.2
BcaNung01632 Brassica carinata HOM05D006582 ORTHO05D008313 8.0e-102 374.4 320 64.4
ATR0933G001 Amborella trichopoda HOM05D006582 ORTHO05D008313 9.2e-98 360.9 309 61.8
Os06g0129300 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 7.5e-92 341.3 272 65.1
Zm00001eb378450 Zea mays HOM05D006582 ORTHO05D008313 6.0e-89 331.6 272 62.9
Eucgr.K00407 Eucalyptus grandis HOM05D006582 ORTHO05D008313 3.6e-86 322.4 233 73.8
Gohir.A08G102500 Gossypium hirsutum HOM05D006582 ORTHO05D008313 6.8e-85 318.2 237 71.3
MD01G1064500 Malus domestica HOM05D006582 ORTHO05D008313 1.3e-83 313.9 202 80.7
HPP92_007389 Vanilla planifolia HOM05D006582 ORTHO05D008313 4.9e-83 312.0 275 61.1
MD01G1063600 Malus domestica HOM05D006582 ORTHO05D008313 4.2e-82 308.9 254 66.9
CDE04G1908 Ceratophyllum demersum HOM05D006582 ORTHO05D008313 1.6e-73 280.4 295 50.8
Potri.015G029300 Populus trichocarpa HOM05D006582 ORTHO05D008313 5.1e-72 275.4 209 70.8
Os10g0520900 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 1.8e-61 240.4 261 47.5
Cpa.g.sc3.116 Carica papaya HOM05D006582 ORTHO05D008313 3.4e-60 236.1 192 67.2
Zm00001eb021230 Zea mays HOM05D006582 ORTHO05D008313 1.3e-54 217.6 283 41.3
PGSC0003DMG401018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 1.2e-52 211.1 155 74.2
Mapoly0081s0017 Marchantia polymorpha HOM05D006582 ORTHO05D008313 7.1e-50 201.8 316 38.6
SMO356G0114 Selaginella moellendorffii HOM05D001613 ORTHO05D001556 1.8e-48 197.2 297 38.7
Hma1.2p1_0512F.1_g169380 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 2.8e-46 189.9 288 46.9
Pp3c14_24810 Physcomitrium patens HOM05D006582 ORTHO05D008313 3.2e-42 176.4 244 42.2
AagrBONN_evm.TU.Sc2ySwM_228.4673 Anthoceros agrestis HOM05D006582 ORTHO05D008313 3.0e-40 169.9 236 41.1
CiPaw.05G199600 Carya illinoinensis HOM05D006582 ORTHO05D008313 3.1e-37 159.8 116 72.4
Hma1.2p1_0415F.1_g148000 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 2.2e-30 137.1 88 81.8
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 3.7e-30 136.3 217 39.6
SHI19111 Sapria himalayana HOM05D006582 ORTHO05D008313 3.1e-21 106.7 113 53.1
Rhsim03G0115100 Rhododendron simsii HOM05D006582 ORTHO05D023108 4.5e-20 102.8 135 48.9
SHI19113 Sapria himalayana HOM05D006582 ORTHO05D008313 4.5e-20 102.8 74 68.9
SEGI_26283 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 1.7e-14 84.3 81 54.3
MD07G1135700 Malus domestica HOM05D006582 ORTHO05D008313 4.2e-10 69.7 79 55.7
SEGI_35321 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 8.8e-08 62.0 60 45.0


User provided reference genes

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