Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 4.5e-183 644.4 322 100.0
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 2.8e-100 369.4 251 74.9
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 1.0e-94 350.9 286 68.5
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 9.7e-93 344.4 255 71.0
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 3.1e-91 339.3 248 71.4
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 3.4e-85 319.3 249 67.1
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 1.8e-83 313.5 160 93.8
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 2.4e-83 313.2 249 67.5
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 8.8e-78 294.7 273 58.6
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 7.5e-77 291.6 329 50.8
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 4.9e-76 288.9 335 49.9
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 1.4e-75 287.3 272 57.0
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 3.1e-75 286.2 272 56.6
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 1.2e-74 284.3 248 62.5
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 1.1e-72 277.7 334 48.8
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 3.3e-72 276.2 221 63.3
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 2.1e-71 273.5 333 49.2
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 3.6e-71 272.7 335 47.8
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 8.0e-71 271.6 309 52.4
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 8.0e-71 271.6 314 51.6
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 6.8e-70 268.5 198 66.7
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 2.0e-69 266.9 156 81.4
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 2.0e-69 266.9 315 49.8
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 2.9e-68 263.1 192 68.2
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 6.4e-68 261.9 149 81.9
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 8.3e-68 261.5 207 62.8
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 8.3e-68 261.5 309 49.8
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 1.4e-67 260.8 204 64.7
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 4.1e-67 259.2 307 49.8
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 1.2e-66 257.7 315 49.2
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 2.0e-66 256.9 328 45.1
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 4.6e-66 255.8 191 67.5
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 3.0e-65 253.1 319 48.9
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 3.9e-65 252.7 252 54.4
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 1.1e-64 251.1 223 57.0
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 1.9e-64 250.4 189 66.1
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 9.5e-64 248.1 300 47.7
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 2.1e-63 246.9 223 56.5
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 2.1e-63 246.9 205 62.9
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 1.4e-62 244.2 159 68.6
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 1.8e-62 243.8 329 44.7
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 2.3e-62 243.4 159 71.1
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 8.9e-62 241.5 196 61.7
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 1.2e-61 241.1 283 48.8
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 2.6e-61 240.0 306 46.4
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 4.4e-61 239.2 333 43.5
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 5.8e-61 238.8 336 44.0
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 9.8e-61 238.0 300 47.7
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.7e-60 237.3 283 48.1
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 4.9e-60 235.7 309 46.3
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.9e-59 233.8 202 55.0
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 2.4e-59 233.4 158 69.0
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 4.1e-59 232.6 245 51.0
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 1.2e-58 231.1 215 54.0
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 1.2e-58 231.1 219 54.8
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 1.6e-58 230.7 205 58.5
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 1.7e-57 227.3 215 54.4
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 3.0e-57 226.5 303 47.2
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 3.0e-57 226.5 212 54.7
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 3.0e-57 226.5 158 67.7
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 3.9e-57 226.1 151 67.5
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 3.9e-57 226.1 336 44.6
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 8.6e-57 224.9 215 53.5
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 5.6e-56 222.2 209 53.6
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 9.5e-56 221.5 209 53.1
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 9.5e-56 221.5 209 53.1
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 1.6e-55 220.7 209 53.1
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 2.8e-55 219.9 235 50.6
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 3.6e-55 219.5 251 47.0
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 3.1e-54 216.5 185 57.3
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 4.4e-53 212.6 155 62.6
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 2.9e-52 209.9 209 52.2
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 8.3e-52 208.4 210 51.0
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 1.4e-51 207.6 190 54.2
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 1.9e-51 207.2 210 50.5
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 2.4e-51 206.8 154 59.7
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 5.4e-51 205.7 308 42.9
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 7.1e-51 205.3 154 61.0
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 9.2e-51 204.9 298 43.6
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 1.6e-50 204.1 154 60.4
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 2.1e-50 203.8 169 58.0
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 2.1e-50 203.8 157 58.6
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 3.5e-50 203.0 301 43.9
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 7.8e-50 201.8 149 64.4
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 1.0e-49 201.4 209 48.8
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 1.7e-49 200.7 156 61.5
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 3.0e-49 199.9 224 46.4
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 3.9e-49 199.5 306 43.5
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.5e-48 197.6 299 42.8
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 9.5e-48 194.9 166 55.4
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 9.5e-48 194.9 166 55.4
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 2.8e-47 193.4 158 58.9
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 4.7e-47 192.6 177 52.5
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 6.2e-47 192.2 163 56.4
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 1.5e-45 187.6 227 50.7
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 2.4e-43 180.3 154 56.5
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 2.1e-42 177.2 209 46.4
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.7e-41 174.1 299 39.8
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 3.8e-36 156.4 243 46.1
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 6.4e-36 155.6 176 46.0
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 9.3e-35 151.8 109 63.3
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 9.3e-35 151.8 188 42.0
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 1.2e-34 151.4 168 44.6
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 6.0e-34 149.1 126 56.3
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 4.8e-31 139.4 244 41.4
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 1.2e-29 134.8 206 41.3
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 3.8e-28 129.8 152 38.8
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 2.1e-26 124.0 93 60.2
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.8e-25 120.9 96 59.4
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 6.7e-25 119.0 77 71.4
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 2.8e-23 113.6 93 58.1
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 1.8e-22 110.9 200 39.0
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 4.6e-18 96.3 156 38.5
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 1.5e-13 81.3 68 55.9
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 4.5e-13 79.7 68 54.4
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 1.0e-12 78.6 78 48.7
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 2.5e-11 73.9 64 54.7
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 3.5e-10 70.1 158 34.2
SHI24230 Sapria himalayana HOM05D005399 ORTHO05D006347 2.5e-08 63.9 42 76.2
SHI24232 Sapria himalayana HOM05D005399 ORTHO05D006347 2.4e-06 57.4 29 79.3


User provided reference genes

Program Settings