Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29215 Davidia involucrata HOM05D008837 ORTHO05D006961 2.7e-43 178.3 95 100.0
Hma1.2p1_0415F.1_g148160 Hydrangea macrophylla HOM05D008837 ORTHO05D006961 1.6e-19 99.4 96 61.5
Oeu061026.1 Olea europaea HOM05D008837 ORTHO05D006961 9.8e-17 90.1 95 51.6
Rhsim03G0215000 Rhododendron simsii HOM05D000001 ORTHO05D000003 7.0e-15 84.0 99 50.5
DCAR_020368 Daucus carota HOM05D008837 ORTHO05D006961 1.6e-14 82.8 97 48.5
CSS0023145 Camellia sinensis var. sinensis HOM05D008613 ORTHO05D006961 5.9e-14 80.9 96 50.0
Actinidia08695 Actinidia chinensis HOM05D008837 ORTHO05D006961 7.7e-14 80.5 96 53.1
PGSC0003DMG400043889 Solanum tuberosum HOM05D008837 ORTHO05D006961 1.7e-13 79.3 102 47.1
Eucgr.A01407 Eucalyptus grandis HOM05D008837 ORTHO05D011237 3.8e-13 78.2 95 47.4
CSS0022315 Camellia sinensis var. sinensis HOM05D008613 ORTHO05D006961 6.5e-13 77.4 101 50.5
Sabra15G0003300 Salix brachista HOM05D008837 ORTHO05D006961 6.5e-13 77.4 94 47.9
Eucgr.A01409 Eucalyptus grandis HOM05D008837 ORTHO05D011237 8.6e-13 77.0 95 47.4
Potri.015G004800 Populus trichocarpa HOM05D008837 ORTHO05D011237 3.2e-12 75.1 95 49.5
PGSC0003DMG400003216 Solanum tuberosum HOM05D008837 ORTHO05D006961 5.5e-12 74.3 103 49.5
Dinv06444 Davidia involucrata HOM05D002018 ORTHO05D002179 7.2e-12 73.9 95 47.4
Thecc.03G208100 Theobroma cacao HOM05D018669 ORTHO05D011237 9.5e-12 73.6 95 47.4
Nitab4.5_0000319g0150 Nicotiana tabacum HOM05D008837 ORTHO05D006961 2.1e-11 72.4 102 44.1
DCAR_020369 Daucus carota HOM05D008837 ORTHO05D011237 4.7e-11 71.2 97 47.4
Manes.05G197800 Manihot esculenta HOM05D008837 ORTHO05D011237 4.7e-11 71.2 95 45.3
PGR042G1156 Punica granatum HOM05D008837 ORTHO05D011237 1.8e-10 69.3 101 46.5
Cc00_g29530 Coffea canephora HOM05D008837 ORTHO05D011237 2.3e-10 68.9 114 41.2
Solyc03g082350.2 Solanum lycopersicum HOM05D008837 ORTHO05D006961 4.0e-10 68.2 105 43.8
Sopen03g022050 Solanum pennellii HOM05D008837 ORTHO05D006961 4.0e-10 68.2 96 44.8
COL.COLO4_14365 Corchorus olitorius HOM05D018669 ORTHO05D011237 5.2e-10 67.8 93 48.4
Potri.012G021602 Populus trichocarpa HOM05D008837 ORTHO05D006961 6.8e-10 67.4 95 42.1
Nn1g00438 Nelumbo nucifera HOM05D008613 ORTHO05D006961 8.8e-10 67.0 99 45.5
Solyc03g081330.1 Solanum lycopersicum HOM05D008837 ORTHO05D006961 1.2e-09 66.6 95 45.3
Duzib205G1426 Durio zibethinus HOM05D018669 ORTHO05D011237 1.5e-09 66.2 95 45.3
Ciclev10023060m.g Citrus clementina HOM05D008837 ORTHO05D006961 2.0e-09 65.9 101 46.5
Potri.001G449800 Populus trichocarpa HOM05D008613 ORTHO05D006961 2.0e-09 65.9 96 45.8
Potri.001G449900 Populus trichocarpa HOM05D008613 ORTHO05D006961 2.0e-09 65.9 96 45.8
Nitab4.5_0005040g0030 Nicotiana tabacum HOM05D008837 ORTHO05D006961 2.6e-09 65.5 104 43.3
Potri.001G450000 Populus trichocarpa HOM05D008613 ORTHO05D006961 2.6e-09 65.5 96 45.8
TAR629G3181 Trochodendron aralioides HOM05D008613 ORTHO05D006961 2.6e-09 65.5 95 45.3
Sopen03g022070 Solanum pennellii HOM05D008837 ORTHO05D006961 5.7e-09 64.3 107 45.8
Oeu023687.1 Olea europaea HOM05D008613 ORTHO05D006961 7.5e-09 63.9 91 39.6
EL10Ac3g05185 Beta vulgaris HOM05D008837 ORTHO05D006961 9.8e-09 63.5 103 38.8
Oeu023688.1 Olea europaea HOM05D008613 ORTHO05D006961 9.8e-09 63.5 91 44.0
vmacro06438 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 9.8e-09 63.5 99 45.5
Atru.chr9.1866 Acer truncatum HOM05D008613 ORTHO05D006961 1.3e-08 63.2 97 44.3
Actinidia18679 Actinidia chinensis HOM05D008837 ORTHO05D006961 1.3e-08 63.2 98 45.9
Duzib205G1760 Durio zibethinus HOM05D008613 ORTHO05D006961 1.3e-08 63.2 96 45.8
Gorai.004G128500 Gossypium raimondii HOM05D008613 ORTHO05D006961 2.2e-08 62.4 94 41.5
Ciclev10017302m.g Citrus clementina HOM05D008837 ORTHO05D011237 3.7e-08 61.6 99 40.4
Gohir.A08G109100 Gossypium hirsutum HOM05D008613 ORTHO05D006961 3.7e-08 61.6 94 41.5
Gohir.A09G186700 Gossypium hirsutum HOM05D018669 ORTHO05D011237 3.7e-08 61.6 95 45.3
Gohir.D03G084800 Gossypium hirsutum HOM05D008613 ORTHO05D006961 3.7e-08 61.6 93 43.0
QL02p027286 Quercus lobata HOM05D008613 ORTHO05D006961 4.9e-08 61.2 100 42.0
Thecc.03G217500 Theobroma cacao HOM05D008613 ORTHO05D006961 4.9e-08 61.2 94 43.6
Atru.chr12.2412 Acer truncatum HOM05D008837 ORTHO05D011237 6.3e-08 60.8 95 41.1
Peaxi162Scf00300g00087 Petunia axillaris HOM05D008837 ORTHO05D006961 6.3e-08 60.8 97 47.4
DCAR_008982 Daucus carota HOM05D008837 ORTHO05D006961 8.3e-08 60.5 97 41.2
Gohir.A02G099100 Gossypium hirsutum HOM05D008613 ORTHO05D006961 8.3e-08 60.5 93 44.1
Gorai.003G077900 Gossypium raimondii HOM05D008613 ORTHO05D006961 8.3e-08 60.5 93 44.1
Sabra16G0303700 Salix brachista HOM05D008613 ORTHO05D006961 8.3e-08 60.5 97 41.2
DCAR_008981 Daucus carota HOM05D008837 ORTHO05D011237 1.1e-07 60.1 95 44.2
Gohir.D08G121900 Gossypium hirsutum HOM05D008613 ORTHO05D006961 1.1e-07 60.1 94 40.4
Nitab4.5_0000319g0160 Nicotiana tabacum HOM05D008837 ORTHO05D006961 1.1e-07 60.1 104 40.4
PGSC0003DMG400003217 Solanum tuberosum HOM05D008837 ORTHO05D006961 1.1e-07 60.1 95 47.4
vmacro11487 Vaccinium macrocarpon HOM05D008613 ORTHO05D006961 1.1e-07 60.1 95 41.1
EL10Ac3g05184 Beta vulgaris HOM05D008613 ORTHO05D006961 1.4e-07 59.7 101 40.6
Nitab4.5_0014067g0010 Nicotiana tabacum HOM05D008837 ORTHO05D006961 1.4e-07 59.7 101 40.6
Sabra16G0303600 Salix brachista HOM05D008613 ORTHO05D006961 1.8e-07 59.3 97 41.2
Sabra16G0303800 Salix brachista HOM05D008613 ORTHO05D006961 1.8e-07 59.3 97 41.2
Cpa.g.sc3.157 Carica papaya HOM05D008837 ORTHO05D011237 2.4e-07 58.9 93 38.7
Prupe.5G133100 Prunus persica HOM05D008613 ORTHO05D006961 2.4e-07 58.9 93 43.0
Sabra16G0303500 Salix brachista HOM05D008613 ORTHO05D006961 2.4e-07 58.9 97 40.2
Ah.13g070730 Amaranthus hybridus HOM05D008613 ORTHO05D011237 4.1e-07 58.2 93 39.8
Gorai.006G203600 Gossypium raimondii HOM05D018669 ORTHO05D011237 5.4e-07 57.8 97 42.3
Sabra16G0303900 Salix brachista HOM05D008613 ORTHO05D006961 5.4e-07 57.8 97 40.2
Ah.07g204750 Amaranthus hybridus HOM05D011561 ORTHO05D011237 9.2e-07 57.0 96 43.8
Nn3g18877 Nelumbo nucifera HOM05D031625 ORTHO05D006961 9.2e-07 57.0 95 43.2
Nn3g18879 Nelumbo nucifera HOM05D031625 ORTHO05D006961 9.2e-07 57.0 95 43.2
CARHR032250 Cardamine hirsuta HOM05D008703 ORTHO05D006961 1.6e-06 56.2 91 37.4
AL1G47210 Arabidopsis lyrata HOM05D008703 ORTHO05D006961 2.7e-06 55.5 91 36.3
Lsat_1_v5_gn_8_4480 Lactuca sativa HOM05D011561 ORTHO05D011237 2.7e-06 55.5 90 42.2
Gohir.D09G181600 Gossypium hirsutum HOM05D018669 ORTHO05D011237 4.5e-06 54.7 102 42.2
Nitab4.5_0000319g0090 Nicotiana tabacum HOM05D008837 ORTHO05D006961 4.5e-06 54.7 100 43.0
AT1G32928 Arabidopsis thaliana HOM05D008703 ORTHO05D006961 5.9e-06 54.3 92 37.0
Cfa016165 Carpinus fangiana HOM05D001784 ORTHO05D001699 5.9e-06 54.3 91 40.7
Manes.01G055100 Manihot esculenta HOM05D008613 ORTHO05D006961 5.9e-06 54.3 94 39.4
Peaxi162Scf00300g00088 Petunia axillaris HOM05D008837 ORTHO05D006961 5.9e-06 54.3 102 47.1
Rhsim02G0253700 Rhododendron simsii HOM05D008613 ORTHO05D006961 5.9e-06 54.3 94 40.4
Sc19g0000610 Simmondsia chinensis HOM05D008613 ORTHO05D389676 5.9e-06 54.3 108 41.7
Cpa.g.sc37.99 Carica papaya HOM05D008613 ORTHO05D006961 7.8e-06 53.9 95 35.8


User provided reference genes

Program Settings