Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 3.1e-218 761.5 388 100.0
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 6.8e-149 531.2 355 80.0
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 4.6e-89 332.4 359 56.3
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 1.3e-88 330.9 359 56.3
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 1.5e-87 327.4 349 56.4
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 1.4e-85 320.9 345 56.2
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 9.4e-66 255.0 367 47.1
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 1.7e-62 244.2 366 44.8
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 2.2e-62 243.8 363 47.1
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 1.0e-59 235.0 364 45.3
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 6.1e-57 225.7 360 45.6
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 7.9e-57 225.3 368 42.9
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 2.0e-55 220.7 318 44.7
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 2.0e-55 220.7 265 51.3
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 4.4e-55 219.5 359 42.1
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 1.3e-54 218.0 356 43.3
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 1.7e-54 217.6 359 42.6
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 4.8e-54 216.1 267 52.1
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 7.0e-53 212.2 337 45.4
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 4.5e-52 209.5 350 43.4
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 8.5e-51 205.3 355 42.5
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 1.9e-50 204.1 329 44.4
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 7.2e-50 202.2 342 41.2
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 6.1e-49 199.1 349 41.3
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 1.3e-46 191.4 441 36.7
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 4.8e-46 189.5 346 41.3
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 2.0e-44 184.1 371 38.8
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 2.6e-44 183.7 423 35.7
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 5.0e-43 179.5 364 39.8
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 6.5e-43 179.1 334 41.9
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 4.2e-42 176.4 374 36.1
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 6.1e-41 172.6 360 38.6
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 1.8e-40 171.0 381 37.8
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 4.0e-40 169.9 372 35.8
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 2.0e-39 167.5 370 35.4
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 2.0e-39 167.5 352 34.9
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 2.6e-39 167.2 262 45.8
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 3.4e-39 166.8 280 44.6
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 4.4e-39 166.4 276 44.2
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 1.3e-38 164.9 370 38.1
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 1.3e-38 164.9 362 37.0
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 1.3e-38 164.9 262 45.8
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 2.8e-38 163.7 369 40.7
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 3.7e-38 163.3 262 44.3
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 4.8e-38 162.9 262 43.9
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.8e-37 161.0 358 34.4
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 1.8e-37 161.0 265 44.2
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 2.4e-37 160.6 349 40.4
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 2.4e-37 160.6 357 34.7
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 9.1e-37 158.7 346 37.3
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 1.3e-35 154.8 353 37.4
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 2.2e-35 154.1 345 39.1
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 8.0e-33 145.6 295 36.9
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 8.0e-33 145.6 295 36.9
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 8.0e-33 145.6 295 36.9
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 1.4e-32 144.8 320 37.5
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 5.2e-32 142.9 295 36.6
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 1.2e-31 141.7 270 40.4
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 1.5e-31 141.4 295 36.6
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 3.4e-31 140.2 356 34.6
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 7.5e-31 139.0 357 31.9
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 9.8e-31 138.7 346 34.4
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 2.8e-30 137.1 305 38.0
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 3.7e-30 136.7 362 34.5
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 7.0e-29 132.5 254 42.9
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 2.0e-28 131.0 330 35.5
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 4.5e-28 129.8 354 37.3
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 1.7e-27 127.9 270 40.4
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 2.3e-27 127.5 210 41.4
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 3.8e-27 126.7 266 41.0
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 6.6e-27 125.9 305 32.8
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 9.5e-26 122.1 335 33.7
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 2.1e-25 120.9 323 35.0
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 4.7e-25 119.8 283 37.1
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 1.2e-23 115.2 245 37.1
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 5.7e-23 112.8 260 37.3
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 5.7e-23 112.8 253 36.0
Lsat_1_v5_gn_7_39641 Lactuca sativa HOM05D003457 ORTHO05D009249 7.5e-23 112.5 236 38.6
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 2.9e-22 110.5 276 31.2
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 6.3e-22 109.4 337 33.8
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 3.2e-21 107.1 257 34.6
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 4.1e-21 106.7 248 34.7
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 5.4e-21 106.3 278 34.5
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 7.0e-21 105.9 265 37.0
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 9.2e-21 105.5 262 36.3
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 1.3e-19 101.7 272 34.9
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 2.3e-19 100.9 326 31.3
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 2.9e-19 100.5 256 33.6
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 1.1e-18 98.6 261 33.3
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 1.1e-18 98.6 271 33.6
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 1.1e-18 98.6 256 30.9
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 1.9e-18 97.8 277 32.9
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 5.6e-18 96.3 326 29.8
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 7.3e-18 95.9 244 34.4
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 7.3e-18 95.9 325 30.8
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 9.5e-18 95.5 276 32.2
Lsat_1_v5_gn_5_150000 Lactuca sativa HOM05D003457 ORTHO05D009249 9.5e-18 95.5 339 30.4
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 1.6e-17 94.7 305 30.8
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 2.8e-17 94.0 261 33.0
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 2.0e-15 87.8 168 41.1
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 3.4e-15 87.0 330 30.3
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 1.3e-14 85.1 252 32.5
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 4.9e-14 83.2 252 32.1
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 1.4e-13 81.6 243 33.3
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 1.4e-13 81.6 243 32.5
SEGI_37736 Sequoiadendron giganteum HOM05D013917 ORTHO05D013169 4.1e-13 80.1 348 27.3
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 2.0e-12 77.8 243 32.9
PSO063G5804 Papaver somniferum HOM05D003457 ORTHO05D009249 4.3e-10 70.1 169 36.7
GSVIVG01038640001 Vitis vinifera HOM05D003457 ORTHO05D009249 2.1e-09 67.8 79 49.4
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 6.2e-09 66.2 243 29.6
ECA233G2997 Erigeron canadensis HOM05D003457 ORTHO05D009249 3.1e-08 63.9 273 29.3


User provided reference genes

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