Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 0.0e+00 1999.9 999 100.0
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 0.0e+00 1414.8 1031 72.1
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 8.3e-284 980.7 997 55.8
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 7.8e-266 921.0 1007 54.1
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 5.3e-214 748.8 1082 43.3
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 4.7e-202 709.1 1016 46.2
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.2e-197 694.5 1003 45.8
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 9.4e-195 684.9 999 44.2
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 2.0e-192 677.2 1007 43.7
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 4.5e-189 666.0 1037 43.3
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 8.0e-186 655.2 949 44.4
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 1.8e-182 644.0 1003 43.5
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 9.5e-179 631.7 787 48.8
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 4.4e-160 569.7 998 40.6
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 1.4e-158 564.7 1026 39.8
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 1.4e-150 538.1 999 39.4
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 1.9e-147 527.7 1012 37.5
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 1.4e-145 521.5 1031 37.9
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 3.8e-143 513.5 1001 37.8
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.2e-141 508.4 993 38.5
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 7.8e-141 505.8 995 38.0
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 1.0e-140 505.4 1063 37.3
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 1.3e-138 498.4 1025 38.1
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 1.2e-133 481.9 1006 37.7
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 2.1e-130 471.1 1064 36.1
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 2.8e-130 470.7 1000 37.9
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 5.3e-129 466.5 1002 36.8
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 7.6e-128 462.6 1009 36.9
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 3.8e-127 460.3 1011 36.9
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 4.2e-126 456.8 992 36.8
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.7e-125 454.1 1014 36.7
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 2.3e-124 451.1 1059 35.3
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 3.9e-124 450.3 1023 36.3
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 1.5e-123 448.4 1053 36.3
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 1.3e-119 435.3 971 34.3
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 7.1e-118 429.5 991 35.3
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 2.1e-117 427.9 848 37.5
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 2.7e-117 427.6 992 35.3
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 2.5e-115 421.0 992 35.6
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 1.4e-113 415.2 1018 34.0
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 1.8e-113 414.8 956 34.1
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 2.0e-112 411.4 1004 35.4
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 2.2e-111 407.9 1005 35.6
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 3.0e-108 397.5 1009 34.1
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 8.7e-108 396.0 984 34.8
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 1.4e-105 388.7 677 40.2
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 1.2e-104 385.6 1033 33.7
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 3.4e-104 384.0 1015 32.9
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 3.4e-104 384.0 1006 32.0
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 7.7e-104 382.9 1037 33.0
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 2.2e-103 381.3 1000 33.4
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 5.0e-103 380.2 1002 33.1
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.1e-102 379.0 1006 31.8
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 2.1e-101 374.8 1039 32.7
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 4.6e-101 373.6 1002 32.5
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 1.8e-100 371.7 1013 32.6
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 5.1e-100 370.2 490 47.1
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 3.3e-99 367.5 1053 31.3
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 1.2e-96 359.0 987 31.5
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.5e-91 342.0 980 30.6
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 3.7e-82 310.8 1014 30.7
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 2.2e-79 301.6 1016 30.5
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 6.1e-77 293.5 1002 28.9
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 2.0e-75 288.5 1059 28.0
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 1.1e-73 282.7 1081 27.9
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 4.5e-72 277.3 992 28.7
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 1.1e-70 272.7 1010 29.1
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 1.5e-70 272.3 555 35.9
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 4.4e-67 260.8 985 28.5
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 2.8e-66 258.1 1060 28.4
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 4.1e-65 254.2 1012 29.0
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 6.6e-63 246.9 857 27.3
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 4.3e-62 244.2 1045 28.4
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 1.6e-61 242.3 1052 28.1
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 1.2e-59 236.1 1060 27.6
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 3.4e-59 234.6 1033 29.4
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 1.7e-58 232.3 954 28.8
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 8.3e-58 229.9 1036 28.1
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 1.7e-55 222.2 628 31.1
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 1.7e-55 222.2 1031 27.8
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 3.6e-53 214.5 1075 27.6
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 4.7e-53 214.2 1025 27.0
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 1.2e-51 209.5 996 26.2
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 4.9e-50 204.1 599 30.7
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 2.4e-49 201.8 1073 26.9
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 7.0e-49 200.3 1089 25.7
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 7.0e-49 200.3 1089 25.7
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 2.7e-48 198.4 926 26.3
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 3.0e-47 194.9 1040 26.8
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 8.6e-47 193.4 277 43.7
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 1.5e-46 192.6 1054 25.7
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 1.6e-45 189.1 620 29.8
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 3.4e-43 181.4 279 40.5
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 9.8e-43 179.9 1075 25.7
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 4.9e-42 177.6 181 55.2
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 3.0e-39 168.3 1133 25.2
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 8.6e-39 166.8 822 26.6
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 2.1e-37 162.2 1049 26.1
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 2.1e-37 162.2 1203 25.1
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 2.3e-36 158.7 558 30.3
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 5.2e-36 157.5 1074 25.0
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 1.2e-32 146.4 292 34.9
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 3.5e-32 144.8 827 24.5
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 1.7e-31 142.5 612 24.8
Haze_09217 Corylus avellana HOM05D013249 ORTHO05D011012 6.2e-29 134.0 974 24.2
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 5.8e-27 127.5 308 33.4
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 2.2e-26 125.6 170 46.5
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 7.1e-25 120.6 745 24.7
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 1.6e-24 119.4 700 24.6
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 5.1e-23 114.4 339 29.2
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 2.5e-22 112.1 552 25.5
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 3.6e-21 108.2 941 21.9
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 8.1e-21 107.1 259 33.2
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 8.1e-21 107.1 414 28.0
Eucgr.K00452 Eucalyptus grandis HOM05D006657 ORTHO05D005964 4.0e-20 104.8 406 27.8
CiPaw.12G074500 Carya illinoinensis HOM05D011672 ORTHO05D011012 6.9e-20 104.0 413 28.1
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 2.0e-19 102.4 524 23.7
CDE04G2546 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 9.9e-19 100.1 782 21.6
FAN13G1375 Fragaria x ananassa HOM05D013249 ORTHO05D011012 9.9e-19 100.1 677 22.6
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 2.9e-18 98.6 303 30.0
RcHm_v2.0_Chr7g0187831 Rosa chinensis HOM05D013249 ORTHO05D011012 2.9e-18 98.6 434 26.0
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 1.1e-17 96.7 263 30.4
Sabra11G0134500 Salix brachista HOM05D011672 ORTHO05D011012 1.4e-17 96.3 582 23.2
Atru.chr12.2480 Acer truncatum HOM05D006657 ORTHO05D005964 4.2e-17 94.7 240 34.2
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 1.6e-16 92.8 357 27.5
FAN08G0662 Fragaria x ananassa HOM05D013249 ORTHO05D011012 1.6e-16 92.8 675 22.7
Thecc.03G215600 Theobroma cacao HOM05D011672 ORTHO05D011012 1.6e-16 92.8 824 23.2
CiPaw.06G039800 Carya illinoinensis HOM05D006657 ORTHO05D005964 6.0e-16 90.9 190 38.9
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 1.0e-15 90.1 358 28.2
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 1.3e-15 89.7 525 26.3
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 1.8e-15 89.4 490 25.9
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 1.8e-15 89.4 431 25.3
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 2.3e-15 89.0 195 31.8
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 2.3e-15 89.0 239 29.7
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 2.3e-15 89.0 195 31.8
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 3.9e-15 88.2 257 30.7
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 3.9e-15 88.2 257 30.7
MELO3C024862.2 Cucumis melo HOM05D006657 ORTHO05D005964 3.9e-15 88.2 280 31.8
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 8.7e-15 87.0 291 28.2
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 8.7e-15 87.0 291 28.2
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 8.7e-15 87.0 291 28.2
FvH4_5g10390 Fragaria vesca HOM05D013249 ORTHO05D011012 8.7e-15 87.0 678 23.2
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 1.1e-14 86.7 239 29.3
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 1.5e-14 86.3 344 26.5
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 1.9e-14 85.9 239 29.3
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 2.5e-14 85.5 591 24.0
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 4.3e-14 84.7 191 34.6
FAN04G0229 Fragaria x ananassa HOM05D013249 ORTHO05D011012 4.3e-14 84.7 674 22.1
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 9.6e-14 83.6 252 30.6
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 1.3e-13 83.2 541 23.7
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 2.1e-13 82.4 332 25.6
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 3.7e-13 81.6 274 29.6
Glyma.13G227600 Glycine max HOM05D013241 ORTHO05D011012 3.7e-13 81.6 528 23.7
FAN18G3072 Fragaria x ananassa HOM05D013249 ORTHO05D011012 6.2e-13 80.9 640 22.0
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 1.4e-12 79.7 252 31.0
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 9.0e-12 77.0 409 25.9
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 1.5e-11 76.3 450 23.8
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 3.4e-11 75.1 409 26.2
HPP92_003258 Vanilla planifolia HOM05D006657 ORTHO05D005964 6.4e-10 70.9 656 22.7
Cpa.g.sc37.109 Carica papaya HOM05D011672 ORTHO05D012736 8.4e-10 70.5 381 25.5
Phvul.006G174000 Phaseolus vulgaris HOM05D013241 ORTHO05D011012 1.4e-09 69.7 447 23.5
Eucgr.L00346 Eucalyptus grandis HOM05D013249 ORTHO05D011012 3.2e-09 68.6 436 25.2
Lj6g0008807 Lotus japonicus HOM05D013241 ORTHO05D011012 3.2e-09 68.6 468 23.3
VMungo0540G2099 Vigna mungo HOM05D013241 ORTHO05D011012 2.7e-08 65.5 431 24.8
Atru.chr9.1833 Acer truncatum HOM05D011672 ORTHO05D011012 7.9e-08 63.9 186 29.0
Potri.003G206701 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.3e-07 63.2 77 41.6
Potri.002G230100 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.8e-07 62.8 77 41.6
Os08g0157800 Oryza sativa ssp. japonica HOM05D057671 ORTHO05D050048 6.7e-07 60.8 221 26.2
arahy.Tifrunner.gnm1.ann1.62N0H4 Arachis hypogaea HOM05D000074 ORTHO05D011012 1.5e-06 59.7 430 23.0
Potri.004G080501 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.5e-06 59.7 77 41.6
THA.LOC104803312 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 1.9e-06 59.3 177 28.8
TPR.G4557 Trifolium pratense HOM05D013241 ORTHO05D011012 2.5e-06 58.9 433 22.4
Gorai.008G261200 Gossypium raimondii HOM05D011672 ORTHO05D011012 3.3e-06 58.5 473 23.0
arahy.Tifrunner.gnm1.ann1.69Z0CE Arachis hypogaea HOM05D013241 ORTHO05D011012 9.6e-06 57.0 451 22.6
BcaC07g37571 Brassica carinata HOM05D010823 ORTHO05D012736 9.6e-06 57.0 214 26.6
BolC8t47914H Brassica oleracea HOM05D010823 ORTHO05D012736 9.6e-06 57.0 214 26.6


User provided reference genes

Program Settings