Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 5.3e-96 354.4 182 100.0
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 1.3e-73 280.0 181 78.5
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 1.3e-73 280.0 181 78.5
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 2.8e-73 278.9 181 76.8
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 2.4e-72 275.8 175 80.0
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 1.6e-71 273.1 180 75.6
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 4.5e-71 271.6 173 78.0
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 5.9e-71 271.2 181 77.3
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 8.5e-70 267.3 181 72.9
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 1.5e-69 266.5 181 76.2
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 1.5e-69 266.5 181 72.9
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 1.9e-69 266.2 178 75.8
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 2.5e-69 265.8 182 76.4
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.2e-69 265.0 181 72.9
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 5.5e-69 264.6 181 72.9
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 5.5e-69 264.6 181 72.4
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 7.2e-69 264.2 176 73.3
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 9.4e-69 263.8 181 72.9
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 1.6e-68 263.1 181 75.7
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 2.1e-68 262.7 182 72.0
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 4.7e-68 261.5 172 75.0
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 8.0e-68 260.8 182 72.5
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 1.0e-67 260.4 175 74.3
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 1.4e-67 260.0 181 74.0
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 1.4e-67 260.0 181 74.0
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 1.8e-67 259.6 182 72.5
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 2.3e-67 259.2 161 80.1
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 8.8e-67 257.3 182 70.9
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 8.8e-67 257.3 181 73.5
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 2.0e-66 256.1 177 70.6
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 3.4e-66 255.4 177 71.8
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 5.7e-66 254.6 174 73.6
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 5.7e-66 254.6 175 74.3
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 5.7e-66 254.6 182 68.7
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 7.5e-66 254.2 182 68.1
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 9.8e-66 253.8 180 71.1
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 3.7e-65 251.9 182 68.1
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 8.3e-65 250.8 173 72.8
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 8.3e-65 250.8 176 70.5
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 1.8e-64 249.6 174 70.1
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 7.0e-64 247.7 167 76.0
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 3.3e-61 238.8 192 65.6
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 1.2e-60 236.9 159 73.6
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 1.2e-60 236.9 177 66.1
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 2.1e-60 236.1 175 69.7
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 4.7e-60 235.0 177 66.1
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 1.4e-59 233.4 177 66.1
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 1.4e-59 233.4 178 68.0
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 3.0e-59 232.3 177 66.1
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 4.0e-59 231.9 168 68.5
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 5.2e-59 231.5 177 65.5
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 5.2e-59 231.5 158 74.7
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 8.9e-59 230.7 172 65.7
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 3.4e-58 228.8 170 68.8
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 4.4e-58 228.4 169 67.5
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 5.7e-58 228.0 166 69.3
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 1.3e-57 226.9 171 65.5
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 1.7e-57 226.5 153 69.9
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 3.7e-57 225.3 176 63.1
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 2.4e-56 222.6 166 66.3
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 2.4e-56 222.6 168 64.3
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 4.1e-56 221.9 158 70.3
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 5.4e-56 221.5 177 60.5
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 5.4e-56 221.5 177 60.5
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 5.4e-56 221.5 177 61.6
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 7.0e-56 221.1 177 60.5
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 9.2e-56 220.7 177 62.1
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 1.6e-55 219.9 170 63.5
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 2.7e-55 219.2 175 61.1
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 2.7e-55 219.2 176 60.8
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 4.6e-55 218.4 157 70.7
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 5.9e-55 218.0 171 61.4
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 1.0e-54 217.2 174 59.8
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 2.3e-54 216.1 170 61.8
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 5.0e-54 214.9 177 59.3
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 8.6e-54 214.2 174 59.8
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 8.6e-54 214.2 165 62.4
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 1.1e-53 213.8 170 61.8
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 1.5e-53 213.4 170 62.9
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 2.5e-53 212.6 141 71.6
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 4.3e-53 211.8 174 60.9
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 2.8e-52 209.1 170 60.6
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 4.7e-52 208.4 166 63.3
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 6.2e-52 208.0 170 60.6
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 4.0e-51 205.3 157 63.1
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 1.3e-49 200.3 174 59.2
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 8.3e-49 197.6 192 58.9
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 4.1e-48 195.3 191 58.1
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 5.4e-48 194.9 132 74.2
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 1.2e-44 183.7 135 68.9
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 6.2e-44 181.4 139 65.5
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 1.5e-42 176.8 193 48.7
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 6.4e-41 171.4 129 65.9
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 1.1e-40 170.6 175 52.0
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 3.2e-40 169.1 128 63.3
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 2.7e-39 166.0 120 67.5
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 3.5e-39 165.6 132 60.6
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 7.8e-39 164.5 197 44.7
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 7.8e-39 164.5 128 62.5
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 6.2e-36 154.8 103 75.7
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 1.8e-35 153.3 98 75.5
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 1.8e-35 153.3 199 44.2
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 1.9e-32 143.3 168 46.4
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 6.2e-28 128.3 150 50.0
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 1.2e-26 124.0 171 40.9
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 1.5e-26 123.6 128 53.1
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 5.6e-21 105.1 170 35.9
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 2.4e-19 99.8 153 39.2
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 6.9e-19 98.2 179 37.4
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 1.2e-18 97.4 110 47.3
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 5.8e-18 95.1 132 41.7
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 2.4e-16 89.7 149 36.9
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 6.7e-14 81.6 48 79.2
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 4.3e-13 79.0 163 31.9
Zm00001eb177740 Zea mays HOM05D002799 ORTHO05D008889 1.3e-06 57.4 41 56.1


User provided reference genes

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