Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29169 Davidia involucrata HOM05D006369 ORTHO05D007764 1.5e-127 459.5 240 100.0
RcHm_v2.0_Chr1g0383921 Rosa chinensis HOM05D006369 ORTHO05D007764 2.9e-81 305.8 236 69.9
TAR365G0740 Trochodendron aralioides HOM05D006369 ORTHO05D007764 3.7e-81 305.4 239 67.4
Manes.08G163800 Manihot esculenta HOM05D006369 ORTHO05D007764 8.3e-81 304.3 240 68.3
Prupe.2G324400 Prunus persica HOM05D006369 ORTHO05D007764 7.0e-80 301.2 240 66.7
CiPaw.05G237500 Carya illinoinensis HOM05D006369 ORTHO05D007764 6.0e-79 298.1 246 64.2
Ciclev10021854m.g Citrus clementina HOM05D006369 ORTHO05D007764 6.0e-79 298.1 210 74.8
FAN10G1961 Fragaria x ananassa HOM05D006369 ORTHO05D007764 1.1e-77 293.9 237 67.5
FAN10G2535 Fragaria x ananassa HOM05D006369 ORTHO05D007764 1.1e-77 293.9 237 67.5
FAN01G2653 Fragaria x ananassa HOM05D006369 ORTHO05D007764 1.5e-77 293.5 237 67.9
CSS0035893 Camellia sinensis var. sinensis HOM05D006369 ORTHO05D007764 1.9e-77 293.1 257 62.3
FvH4_7g33790 Fragaria vesca HOM05D006369 ORTHO05D007764 1.9e-77 293.1 237 67.9
Actinidia00694 Actinidia chinensis HOM05D006369 ORTHO05D007764 4.3e-77 292.0 238 65.5
Cc02_g00390 Coffea canephora HOM05D006369 ORTHO05D007764 5.6e-77 291.6 236 69.1
CiPaw.06G019700 Carya illinoinensis HOM05D006369 ORTHO05D007764 3.6e-76 288.9 236 64.0
FAN03G1142 Fragaria x ananassa HOM05D006369 ORTHO05D007764 4.0e-75 285.4 237 66.2
FAN03G2967 Fragaria x ananassa HOM05D006369 ORTHO05D007764 4.0e-75 285.4 237 66.2
Lj1A1033G61 Lonicera japonica HOM05D006369 ORTHO05D007764 8.9e-75 284.3 241 69.7
Cfa015892 Carpinus fangiana HOM05D006369 ORTHO05D007764 2.6e-74 282.7 243 65.4
Atru.chr7.1119 Acer truncatum HOM05D006369 ORTHO05D007764 1.7e-73 280.0 245 63.7
MD07G1306400 Malus domestica HOM05D006369 ORTHO05D007764 1.4e-72 276.9 237 64.1
Potri.019G052400 Populus trichocarpa HOM05D006369 ORTHO05D007764 5.4e-72 275.0 241 64.7
Thecc.03G000800 Theobroma cacao HOM05D006369 ORTHO05D007764 1.6e-71 273.5 241 63.9
MSTRG.8579 Avicennia marina HOM05D006369 ORTHO05D007764 1.7e-70 270.0 239 61.5
GSVIVG01024423001 Vitis vinifera HOM05D006369 ORTHO05D007764 2.5e-69 266.2 204 69.6
ClCG10G009050 Citrullus lanatus HOM05D006369 ORTHO05D007764 5.6e-69 265.0 245 62.4
Migut.F00102 Erythranthe guttata HOM05D006369 ORTHO05D007764 1.6e-68 263.5 241 60.6
CsaV3_4G008720 Cucumis sativus L. HOM05D006369 ORTHO05D007764 8.1e-68 261.2 243 62.1
MELO3C024871.2 Cucumis melo HOM05D006369 ORTHO05D007764 1.1e-67 260.8 244 63.1
Nn3g21321 Nelumbo nucifera HOM05D006369 ORTHO05D007764 1.4e-67 260.4 254 58.3
MD01G1234200 Malus domestica HOM05D006369 ORTHO05D007764 1.8e-67 260.0 238 62.6
Ca_04928_v3 Cicer arietinum L. HOM05D006369 ORTHO05D007764 3.8e-65 252.3 239 56.9
Duzib211G0044 Durio zibethinus HOM05D006369 ORTHO05D007764 4.9e-65 251.9 246 61.0
CANSAT21G0373 Cannabis sativa HOM05D006369 ORTHO05D007764 8.4e-65 251.1 219 64.4
vmacro02505 Vaccinium macrocarpon HOM05D006369 ORTHO05D007764 1.7e-62 243.4 278 52.9
Sed0025457 Sechium edule HOM05D006369 ORTHO05D007764 3.9e-62 242.3 244 59.0
Gohir.A07G176900 Gossypium hirsutum HOM05D006369 ORTHO05D007764 5.1e-62 241.9 216 63.9
Nitab4.5_0000820g0010 Nicotiana tabacum HOM05D006369 ORTHO05D007764 5.1e-62 241.9 209 63.6
Lalb_Chr19g0139881 Lupinus albus HOM05D006369 ORTHO05D007764 1.1e-61 240.7 222 60.4
Gohir.D07G184401 Gossypium hirsutum HOM05D006369 ORTHO05D007764 1.5e-61 240.4 215 64.2
Hund18049 Selenicereus undatus HOM05D006369 ORTHO05D007764 1.9e-61 240.0 252 56.7
Gorai.001G204600 Gossypium raimondii HOM05D006369 ORTHO05D007764 3.3e-61 239.2 215 64.2
Nitab4.5_0000001g0150 Nicotiana tabacum HOM05D006369 ORTHO05D007764 1.6e-60 236.9 208 63.5
Psat7g171520 Pisum sativum HOM05D006369 ORTHO05D007764 1.6e-60 236.9 244 55.7
Aqoxy2G03109 Aquilegia oxysepala HOM05D006369 ORTHO05D007764 1.4e-59 233.8 236 57.2
Glyma.12G018800 Glycine max HOM05D006369 ORTHO05D007764 1.4e-59 233.8 235 57.9
Ah.08g212670 Amaranthus hybridus HOM05D006369 ORTHO05D007764 2.4e-59 233.0 240 57.5
Haze_00598 Corylus avellana HOM05D006369 ORTHO05D007764 2.4e-59 233.0 187 69.0
EL10Ac7g17391 Beta vulgaris HOM05D006369 ORTHO05D007764 5.2e-59 231.9 250 56.0
Phvul.011G021200 Phaseolus vulgaris HOM05D006369 ORTHO05D007764 5.2e-59 231.9 233 58.4
SalBow4G3280 Salvia bowleyana HOM05D006369 ORTHO05D007764 6.9e-59 231.5 237 53.2
HanXRQChr17g0541681 Helianthus annuus HOM05D006369 ORTHO05D007764 1.5e-58 230.3 251 53.8
VMungo1127G0993 Vigna mungo HOM05D006369 ORTHO05D007764 2.6e-58 229.6 240 59.2
CAN.G317.12 Capsicum annuum HOM05D006369 ORTHO05D007764 7.6e-58 228.0 207 61.4
PGR042G2784 Punica granatum HOM05D006369 ORTHO05D007764 6.4e-57 224.9 235 56.6
Glyma.11G092500 Glycine max HOM05D006369 ORTHO05D007764 1.4e-56 223.8 242 56.2
DCAR_020401 Daucus carota HOM05D006369 ORTHO05D007764 1.9e-56 223.4 231 57.6
MBI06_g08525_MAGBIO Magnolia biondii HOM05D006369 ORTHO05D007764 4.2e-56 222.2 218 58.7
arahy.Tifrunner.gnm1.ann1.WFP97B Arachis hypogaea HOM05D006369 ORTHO05D007764 7.1e-56 221.5 271 51.3
Oeu005324.1 Olea europaea HOM05D006369 ORTHO05D007764 2.1e-55 219.9 167 70.7
Solyc03g062680.3 Solanum lycopersicum HOM05D006369 ORTHO05D007764 3.5e-55 219.2 209 62.7
THA.LOC104820876 Tarenaya hassleriana HOM05D006369 ORTHO05D007764 3.5e-55 219.2 206 59.7
Sopen03g015000 Solanum pennellii HOM05D006369 ORTHO05D007764 6.0e-55 218.4 209 62.7
Medtr4g077610 Medicago truncatula HOM05D006369 ORTHO05D007764 1.0e-54 217.6 218 57.8
ECA246G2850 Erigeron canadensis HOM05D006369 ORTHO05D007764 3.0e-54 216.1 242 53.7
A02p03940 Brassica napus HOM05D006369 ORTHO05D007764 2.5e-53 213.0 200 58.5
Thhalv10014449m.g Eutrema salsugineum HOM05D006369 ORTHO05D007764 2.5e-53 213.0 240 53.8
C02p08760 Brassica napus HOM05D006369 ORTHO05D007764 3.3e-53 212.6 184 62.5
Sp6g27090 Schrenkiella parvula HOM05D006369 ORTHO05D007764 3.3e-53 212.6 225 54.7
arahy.Tifrunner.gnm1.ann1.F9R2PF Arachis hypogaea HOM05D006369 ORTHO05D007764 4.3e-53 212.2 286 48.6
BcaNung00427 Brassica carinata HOM05D006369 ORTHO05D007764 9.6e-53 211.1 192 61.5
CARHR196110 Cardamine hirsuta HOM05D006369 ORTHO05D007764 9.6e-53 211.1 226 54.0
AL6G28090 Arabidopsis lyrata HOM05D006369 ORTHO05D007764 1.3e-52 210.7 190 61.1
BcaC03g18532 Brassica carinata HOM05D006369 ORTHO05D007764 1.6e-52 210.3 184 62.0
BolC2t06790H Brassica oleracea HOM05D006369 ORTHO05D007764 1.6e-52 210.3 184 62.0
BraA02t05358Z Brassica rapa HOM05D006369 ORTHO05D007764 2.1e-52 209.9 201 58.2
Lsat_1_v5_gn_3_37940 Lactuca sativa HOM05D006369 ORTHO05D007764 2.4e-51 206.5 227 54.6
TPR.G39567 Trifolium pratense HOM05D006369 ORTHO05D007764 2.4e-51 206.5 252 50.8
Lj3g0017971 Lotus japonicus HOM05D006369 ORTHO05D007764 4.0e-51 205.7 231 53.2
Sc05g0004440 Simmondsia chinensis HOM05D006369 ORTHO05D007764 5.3e-51 205.3 169 62.7
AT5G17070 Arabidopsis thaliana HOM05D006369 ORTHO05D007764 6.9e-51 204.9 202 56.9
Eucgr.A02962 Eucalyptus grandis HOM05D006369 ORTHO05D007764 6.9e-51 204.9 195 55.4
SGA_v2.0_scaffold18G08505 Striga asiatica HOM05D006369 ORTHO05D007764 1.2e-50 204.1 243 51.9
Carub.0006s1525 Capsella rubella HOM05D006369 ORTHO05D007764 1.5e-50 203.8 233 52.8
Rhsim13G0016700 Rhododendron simsii HOM05D006369 ORTHO05D007764 2.0e-50 203.4 281 46.3
Aa31LG11G12610 Aethionema arabicum HOM05D006369 ORTHO05D007764 9.9e-50 201.1 226 54.0
Peaxi162Scf00076g00928 Petunia axillaris HOM05D006369 ORTHO05D007764 9.9e-50 201.1 284 44.7
BcaB01g04960 Brassica carinata HOM05D006369 ORTHO05D007764 4.9e-49 198.7 248 51.6
Psat1g047200 Pisum sativum HOM05D006369 ORTHO05D007764 1.5e-45 187.2 146 66.4
Psat1g047280 Pisum sativum HOM05D006369 ORTHO05D007764 8.1e-44 181.4 135 68.9
PSO170G0520 Papaver somniferum HOM05D006369 ORTHO05D007764 2.4e-43 179.9 242 50.0
PSO210G6912 Papaver somniferum HOM05D006369 ORTHO05D007764 6.9e-43 178.3 242 49.6
Psat1g047240 Pisum sativum HOM05D006369 ORTHO05D007764 2.2e-41 173.3 128 69.5
Dinv06133 Davidia involucrata HOM05D006369 ORTHO05D007764 1.9e-40 170.2 105 81.9
CDE02G3455 Ceratophyllum demersum HOM05D006369 ORTHO05D007764 1.5e-37 160.6 236 46.6
SEGI_01011 Sequoiadendron giganteum HOM05D006369 ORTHO05D007764 9.6e-37 157.9 158 55.7
unitig_747.g21708 Utricularia gibba HOM05D006369 ORTHO05D007764 3.7e-36 156.0 252 41.3
Hma1.2p1_1235F.1_g269100 Hydrangea macrophylla HOM05D006369 ORTHO05D007764 1.1e-35 154.5 145 64.1
Os06g0300700 Oryza sativa ssp. japonica HOM05D006369 ORTHO05D007764 1.8e-35 153.7 239 45.2
HPP92_026820 Vanilla planifolia HOM05D006369 ORTHO05D007764 6.9e-35 151.8 216 45.8
Zm00001eb381130 Zea mays HOM05D006369 ORTHO05D007764 2.9e-33 146.4 230 44.3
ATR0213G006 Amborella trichopoda HOM05D006369 ORTHO05D007764 9.3e-32 141.4 169 52.1
BraA03t10137Z Brassica rapa HOM05D006369 ORTHO05D007764 3.5e-31 139.4 167 49.1
COL.COLO4_13442 Corchorus olitorius HOM05D006369 ORTHO05D007764 1.5e-29 134.0 191 47.6
AagrBONN_evm.TU.Sc2ySwM_344.1770 Anthoceros agrestis HOM05D006369 ORTHO05D007764 1.3e-25 120.9 143 48.3
Pp3c20_5600 Physcomitrium patens HOM05D006369 ORTHO05D007764 1.3e-25 120.9 231 39.4
CBR_g17900 Chara braunii HOM05D006369 ORTHO05D007764 1.6e-23 114.0 133 46.6
Mapoly0084s0069 Marchantia polymorpha HOM05D006369 ORTHO05D007764 4.6e-23 112.5 197 41.1
Sabra19G0056300 Salix brachista HOM05D006369 ORTHO05D007764 1.0e-22 111.3 94 68.1
RcHm_v2.0_Chr5g0041771 Rosa chinensis HOM05D006369 ORTHO05D007764 1.3e-17 94.4 67 68.7
SMO141G0301 Selaginella moellendorffii HOM05D006369 ORTHO05D007764 3.8e-17 92.8 152 39.5
BolC3t13440H Brassica oleracea HOM05D006369 ORTHO05D007764 3.6e-15 86.3 120 50.8
C03p09390 Brassica napus HOM05D006369 ORTHO05D007764 5.7e-13 79.0 131 45.0
BcaB01g05232 Brassica carinata HOM05D006369 ORTHO05D007764 1.3e-12 77.8 110 49.1
Cpa.g.sc39.77 Carica papaya HOM05D006369 ORTHO05D007764 2.2e-12 77.0 50 70.0
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 2.0e-10 70.5 105 41.0
Cre10.g463700 Chlamydomonas reinhardtii HOM05D006369 ORTHO05D007764 2.6e-10 70.1 121 38.0
PGSC0003DMG401008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 2.6e-10 70.1 95 53.7
Sabra19G0056200 Salix brachista HOM05D006369 ORTHO05D007764 4.5e-10 69.3 49 75.5
PGSC0003DMG402008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 5.9e-10 68.9 44 63.6
Sabra19G0056100 Salix brachista HOM05D006369 ORTHO05D007764 7.7e-10 68.6 78 53.8
A03p08120 Brassica napus HOM05D006369 ORTHO05D007764 2.7e-07 60.1 143 37.8
QL10p024490 Quercus lobata HOM05D006369 ORTHO05D007764 3.0e-06 56.6 51 62.7
Lsat_1_v5_gn_5_54781 Lactuca sativa HOM05D000375 ORTHO05D000240 8.8e-06 55.1 34 67.6


User provided reference genes

Program Settings