Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 1.1e-75 286.6 145 100.0
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 5.4e-67 257.7 145 89.7
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.3e-65 253.1 145 88.3
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.5e-64 249.6 144 86.1
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 6.2e-63 244.2 145 82.1
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 1.1e-62 243.4 145 82.8
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 1.8e-62 242.7 145 82.1
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 1.8e-62 242.7 145 82.1
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 2.3e-62 242.3 145 84.8
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 5.2e-62 241.1 145 80.7
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 5.2e-62 241.1 145 82.1
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 8.9e-62 240.4 145 80.7
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 3.4e-61 238.4 145 80.7
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.4e-61 238.0 145 82.8
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.4e-61 238.0 145 82.1
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 4.4e-61 238.0 145 81.4
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 9.9e-61 236.9 143 81.8
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 1.3e-60 236.5 145 80.0
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.7e-60 236.1 145 82.8
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 1.7e-60 236.1 145 80.7
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 2.2e-60 235.7 145 82.1
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 2.9e-60 235.3 145 80.7
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 2.9e-60 235.3 145 80.0
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.9e-60 235.3 145 79.3
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 2.9e-60 235.3 145 79.3
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 3.7e-60 235.0 145 82.1
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 4.9e-60 234.6 145 82.1
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 6.4e-60 234.2 145 82.8
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 6.4e-60 234.2 145 80.7
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 8.3e-60 233.8 145 82.1
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.4e-59 232.3 145 82.1
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 5.4e-59 231.1 152 78.3
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 7.1e-59 230.7 145 77.9
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 7.1e-59 230.7 145 81.4
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 9.2e-59 230.3 145 79.3
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 9.2e-59 230.3 145 78.6
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.1e-58 229.2 145 77.9
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.7e-58 228.8 128 87.5
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 2.7e-58 228.8 144 78.5
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 3.5e-58 228.4 145 77.9
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 1.0e-57 226.9 143 80.4
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 1.0e-57 226.9 148 77.7
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 1.3e-57 226.5 145 75.9
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 1.3e-57 226.5 145 75.9
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 1.3e-57 226.5 145 78.6
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 1.7e-57 226.1 145 77.2
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 5.1e-57 224.6 145 76.6
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 8.6e-57 223.8 145 77.2
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.9e-56 222.6 145 75.2
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 2.5e-56 222.2 145 73.8
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 7.3e-56 220.7 145 75.2
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 7.3e-56 220.7 145 76.6
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 7.3e-56 220.7 145 76.6
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.2e-55 219.9 145 73.8
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 6.2e-55 217.6 145 74.5
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 6.2e-55 217.6 146 76.0
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 2.4e-54 215.7 145 74.5
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 8.9e-54 213.8 145 72.4
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 1.5e-53 213.0 145 71.7
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 5.8e-53 211.1 145 72.4
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 7.6e-53 210.7 143 75.5
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 9.9e-53 210.3 143 72.0
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 2.2e-52 209.1 143 72.0
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 2.2e-52 209.1 130 76.9
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 3.8e-52 208.4 145 69.7
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 3.8e-52 208.4 145 71.0
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 6.4e-52 207.6 146 72.6
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 8.4e-52 207.2 143 74.8
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 8.4e-52 207.2 143 74.8
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 1.1e-51 206.8 143 74.1
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.4e-51 206.5 136 74.3
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.4e-51 206.5 145 70.3
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 2.4e-51 205.7 143 74.1
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 3.2e-51 205.3 143 74.1
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 4.1e-51 204.9 143 73.4
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 4.1e-51 204.9 143 74.1
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 5.4e-51 204.5 143 69.9
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 7.1e-51 204.1 146 72.6
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 9.2e-51 203.8 143 74.8
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 1.6e-50 203.0 143 73.4
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 3.5e-50 201.8 145 69.7
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 4.6e-50 201.4 143 73.4
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 4.6e-50 201.4 145 70.3
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 4.6e-50 201.4 145 67.6
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 7.8e-50 200.7 145 67.6
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 1.3e-49 199.9 145 69.0
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 3.9e-49 198.4 145 66.9
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 3.9e-49 198.4 145 70.3
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 3.9e-49 198.4 125 76.0
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 5.1e-49 198.0 145 72.4
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 5.1e-49 198.0 145 70.3
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 5.1e-49 198.0 145 68.3
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 5.1e-49 198.0 129 73.6
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.5e-48 196.4 145 70.3
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 5.6e-48 194.5 151 69.5
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 5.6e-48 194.5 145 68.3
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 7.3e-48 194.1 144 71.5
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 2.1e-47 192.6 144 68.8
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 2.8e-47 192.2 145 66.9
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 3.6e-47 191.8 146 66.4
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 6.2e-47 191.0 145 64.8
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 6.2e-47 191.0 146 64.4
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 8.1e-47 190.7 143 70.6
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 2.4e-46 189.1 151 67.5
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 4.0e-46 188.3 145 66.2
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 6.9e-46 187.6 171 59.1
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 5.8e-45 184.5 171 57.9
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 2.2e-44 182.6 146 62.3
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 8.4e-44 180.6 146 61.6
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 1.1e-43 180.3 146 61.6
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 1.6e-42 176.4 144 58.3
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 6.0e-42 174.5 145 63.4
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 7.8e-42 174.1 145 62.8
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.0e-41 172.2 139 64.7
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 5.1e-41 171.4 109 80.7
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 2.5e-40 169.1 143 58.7
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 3.3e-40 168.7 144 59.0
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 4.3e-40 168.3 144 58.3
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.1e-39 166.0 138 63.8
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.8e-39 165.6 145 63.4
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 4.8e-39 164.9 144 53.5
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 8.1e-39 164.1 115 74.8
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 3.2e-35 152.1 109 69.7
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 3.1e-30 135.6 153 54.2
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 3.1e-30 135.6 83 77.1
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 6.9e-30 134.4 145 55.9
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 9.9e-29 130.6 93 72.0
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.1e-27 127.1 83 72.3
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.9e-27 126.3 126 56.3
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 4.6e-26 121.7 144 43.8
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.7e-23 112.1 166 42.2
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 5.3e-22 108.2 87 62.1
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 3.4e-21 105.5 54 87.0
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.8e-20 102.1 66 69.7
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 9.3e-19 97.4 84 63.1
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 4.6e-18 95.1 155 37.4
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 3.3e-16 89.0 61 75.4
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 3.3e-16 89.0 162 34.6
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 9.0e-14 80.9 58 69.0
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 4.5e-13 78.6 98 46.9
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 1.4e-11 73.6 61 65.6
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 2.1e-10 69.7 54 68.5
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 3.6e-10 68.9 158 27.8
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 5.1e-09 65.1 74 39.2
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 2.2e-07 59.7 60 40.0


User provided reference genes

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