Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 7.9e-70 266.9 129 100.0
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 4.7e-54 214.5 127 78.0
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.0e-53 211.8 127 81.9
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.0e-53 211.8 127 81.9
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 5.7e-52 207.6 167 62.3
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 7.4e-52 207.2 127 74.8
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 7.4e-52 207.2 127 78.7
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 9.7e-52 206.8 127 74.0
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.7e-51 206.1 127 74.8
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 2.2e-51 205.7 127 75.6
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 3.7e-51 204.9 127 73.2
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 8.2e-51 203.8 127 75.6
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 1.1e-50 203.4 127 74.8
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.4e-50 203.0 127 74.8
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.1e-50 201.8 127 78.0
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 1.6e-49 199.5 128 71.9
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 2.6e-49 198.7 128 69.5
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 2.6e-49 198.7 127 74.0
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.5e-49 198.4 127 77.2
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 3.5e-49 198.4 127 73.2
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.7e-48 196.1 129 75.2
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.7e-48 196.1 129 75.2
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 2.2e-48 195.7 127 74.0
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 1.1e-47 193.4 127 69.3
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.1e-47 193.4 128 71.9
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 1.5e-47 193.0 127 70.1
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 1.5e-47 193.0 127 70.9
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 1.9e-47 192.6 127 70.9
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 7.2e-47 190.7 128 72.7
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 9.4e-47 190.3 128 69.5
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.6e-46 189.5 127 71.7
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 2.1e-46 189.1 127 68.5
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 4.7e-46 188.0 127 66.1
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 4.7e-46 188.0 127 67.7
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 4.7e-46 188.0 128 68.8
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 6.1e-46 187.6 128 67.2
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 8.0e-46 187.2 127 67.7
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.0e-45 186.8 128 70.3
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.0e-45 186.8 127 66.9
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 2.3e-45 185.7 127 65.4
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.3e-45 185.7 127 66.1
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 4.0e-45 184.9 128 68.8
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 8.8e-45 183.7 128 68.0
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 8.8e-45 183.7 128 67.2
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.2e-44 183.3 127 69.3
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 1.2e-44 183.3 129 66.7
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 2.0e-44 182.6 113 75.2
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.6e-44 182.2 128 68.8
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 3.3e-44 181.8 127 67.7
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 4.4e-44 181.4 127 64.6
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 5.7e-44 181.0 127 63.8
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 5.7e-44 181.0 128 67.2
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 5.7e-44 181.0 128 68.0
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 5.7e-44 181.0 128 68.0
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 5.7e-44 181.0 128 67.2
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 7.5e-44 180.6 145 60.7
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 7.5e-44 180.6 127 66.9
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 9.7e-44 180.3 127 66.9
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 1.7e-43 179.5 127 66.9
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 2.2e-43 179.1 128 64.8
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 2.2e-43 179.1 127 63.8
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 8.2e-43 177.2 128 65.6
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 8.2e-43 177.2 127 64.6
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 1.1e-42 176.8 128 64.8
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 1.1e-42 176.8 127 65.4
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.4e-42 176.4 127 66.1
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 1.4e-42 176.4 129 65.1
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 1.8e-42 176.0 127 61.4
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.8e-42 176.0 127 65.4
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.4e-42 175.6 128 66.4
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 4.1e-42 174.9 128 64.1
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 4.1e-42 174.9 129 66.7
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 7.0e-42 174.1 127 62.2
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 7.0e-42 174.1 127 62.2
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 9.1e-42 173.7 127 62.2
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 9.1e-42 173.7 130 66.2
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.5e-41 171.8 129 66.7
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.5e-41 171.8 128 66.4
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 3.5e-41 171.8 129 67.4
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 4.5e-41 171.4 130 66.2
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.2e-40 169.1 127 64.6
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 2.9e-40 168.7 129 64.3
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.9e-40 168.7 129 64.3
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 3.8e-40 168.3 137 57.7
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 3.8e-40 168.3 137 57.7
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 6.5e-40 167.5 128 64.1
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 6.5e-40 167.5 127 61.4
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 8.5e-40 167.2 128 62.5
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 8.5e-40 167.2 127 61.4
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 1.1e-39 166.8 128 63.3
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 1.5e-39 166.4 127 58.3
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.9e-39 166.0 128 61.7
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 9.4e-39 163.7 128 63.3
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 9.4e-39 163.7 128 60.9
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 1.6e-38 162.9 127 60.6
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 3.6e-38 161.8 130 63.8
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 3.6e-38 161.8 137 55.5
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 4.7e-38 161.4 125 62.4
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 4.7e-38 161.4 127 60.6
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 8.0e-38 160.6 142 57.7
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.0e-37 160.2 129 60.5
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 6.8e-37 157.5 129 59.7
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 8.8e-37 157.1 128 59.4
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.6e-36 155.6 127 60.6
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 4.4e-36 154.8 129 58.9
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 4.4e-36 154.8 129 58.1
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 5.7e-36 154.5 127 59.8
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 5.7e-36 154.5 128 55.5
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 9.8e-36 153.7 120 67.5
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 2.2e-35 152.5 127 60.6
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 8.3e-35 150.6 129 57.4
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 1.1e-34 150.2 119 58.8
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 1.1e-34 150.2 129 58.9
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.4e-34 149.1 116 64.7
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.4e-34 149.1 116 62.9
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 5.4e-34 147.9 129 56.6
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 1.0e-32 143.7 160 45.6
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 1.7e-32 142.9 168 44.6
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.5e-31 139.8 129 54.3
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 7.2e-31 137.5 132 50.0
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 1.0e-29 133.7 149 50.3
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 1.4e-29 133.3 98 67.3
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 3.4e-28 128.6 89 70.8
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 7.5e-28 127.5 128 52.3
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 2.4e-26 122.5 128 50.0
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 9.2e-26 120.6 129 51.2
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 5.0e-24 114.8 74 71.6
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 1.1e-23 113.6 74 71.6
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 1.1e-23 113.6 74 71.6
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.6e-22 109.8 89 64.0
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 2.8e-22 109.0 127 42.5
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 3.6e-22 108.6 96 62.5
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.5e-20 103.2 77 62.3
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 3.4e-20 102.1 127 42.5
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 1.9e-15 86.3 53 75.5
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 1.3e-11 73.6 66 50.0
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 1.3e-11 73.6 59 55.9
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 5.4e-10 68.2 84 42.9
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 1.6e-09 66.6 87 37.9
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 4.6e-09 65.1 50 56.0
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 5.0e-08 61.6 89 37.1
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.6e-06 56.6 86 39.5


User provided reference genes

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