Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29109 Davidia involucrata HOM05D004207 ORTHO05D005188 1.2e-146 523.1 257 100.0
Dinv21465 Davidia involucrata HOM05D004207 ORTHO05D005188 2.2e-116 422.5 253 81.4
Actinidia37879 Actinidia chinensis HOM05D004207 ORTHO05D005188 4.8e-111 404.8 253 76.7
Actinidia17959 Actinidia chinensis HOM05D004207 ORTHO05D005188 1.7e-108 396.4 253 75.9
QL07p011416 Quercus lobata HOM05D004207 ORTHO05D005188 1.9e-107 392.9 256 73.0
CSS0026158 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 5.5e-107 391.3 253 73.9
CSS0030520 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 5.5e-107 391.3 253 73.9
TAR072G0001 Trochodendron aralioides HOM05D004207 ORTHO05D005188 7.2e-107 391.0 253 74.7
CSS0037639 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 1.2e-106 390.2 253 75.1
CSS0037507 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 1.0e-105 387.1 253 74.7
Oeu057783.1 Olea europaea HOM05D004207 ORTHO05D005188 3.0e-105 385.6 256 74.2
Potri.006G040400 Populus trichocarpa HOM05D004207 ORTHO05D005188 8.8e-105 384.0 254 74.8
Sabra06G0027300 Salix brachista HOM05D004207 ORTHO05D005188 1.2e-104 383.6 254 74.0
TWI77G0534 Tripterygium wilfordii HOM05D004207 ORTHO05D005188 2.6e-104 382.5 253 74.7
Nn7g36827 Nelumbo nucifera HOM05D004207 ORTHO05D005188 1.3e-103 380.2 253 73.9
Lj2C402T2 Lonicera japonica HOM05D004207 ORTHO05D005188 1.7e-103 379.8 254 72.8
Potri.016G035600 Populus trichocarpa HOM05D004207 ORTHO05D005188 1.8e-102 376.3 254 73.2
vmacro07779 Vaccinium macrocarpon HOM05D004207 ORTHO05D005188 1.8e-102 376.3 264 70.1
Rhsim03G0036600 Rhododendron simsii HOM05D004207 ORTHO05D005188 4.1e-102 375.2 255 71.4
Solyc10g078400.2 Solanum lycopersicum HOM05D004207 ORTHO05D005188 9.2e-102 374.0 253 72.3
Cpa.g.sc92.81 Carica papaya HOM05D004207 ORTHO05D005188 1.6e-101 373.2 252 70.2
CiPaw.10G041000 Carya illinoinensis HOM05D004207 ORTHO05D005188 1.6e-101 373.2 256 71.5
Hma1.2p1_0007F.1_g005270 Hydrangea macrophylla HOM05D004207 ORTHO05D005188 1.6e-101 373.2 258 73.6
Sopen10g029060 Solanum pennellii HOM05D004207 ORTHO05D005188 3.5e-101 372.1 253 71.5
Nitab4.5_0004588g0010 Nicotiana tabacum HOM05D004207 ORTHO05D005188 4.5e-101 371.7 253 71.5
Nitab4.5_0000812g0050 Nicotiana tabacum HOM05D004207 ORTHO05D005188 7.7e-101 370.9 253 71.9
Aqoxy1G00399 Aquilegia oxysepala HOM05D004207 ORTHO05D005188 6.6e-100 367.9 253 70.0
GSVIVG01025744001 Vitis vinifera HOM05D004207 ORTHO05D005188 6.6e-100 367.9 254 72.4
MBI13_g09213_MAGBIO Magnolia biondii HOM05D004207 ORTHO05D005188 2.5e-99 365.9 253 70.4
MSTRG.19794 Avicennia marina HOM05D004207 ORTHO05D005188 4.3e-99 365.2 253 70.8
Migut.J01642 Erythranthe guttata HOM05D004207 ORTHO05D005188 4.3e-99 365.2 242 73.6
Lj6A558G55 Lonicera japonica HOM05D004207 ORTHO05D005188 4.3e-99 365.2 254 71.3
PGSC0003DMG400008376 Solanum tuberosum HOM05D004207 ORTHO05D005188 9.5e-99 364.0 256 69.9
Cfa019993 Carpinus fangiana HOM05D004207 ORTHO05D000579 2.8e-98 362.5 223 78.9
COL.COLO4_07075 Corchorus olitorius HOM05D004207 ORTHO05D005188 4.7e-98 361.7 254 68.5
Manes.08G060400 Manihot esculenta HOM05D004207 ORTHO05D005188 4.7e-98 361.7 252 71.0
DCAR_020580 Daucus carota HOM05D004207 ORTHO05D005188 6.1e-98 361.3 255 69.8
Sabra16G0037900 Salix brachista HOM05D004207 ORTHO05D005188 1.0e-97 360.5 254 71.3
SalBow6G6231 Salvia bowleyana HOM05D004207 ORTHO05D005188 1.0e-97 360.5 255 70.2
CAN.G960.63 Capsicum annuum HOM05D004207 ORTHO05D005188 3.0e-97 359.0 254 70.9
Duzib093G1083 Durio zibethinus HOM05D004207 ORTHO05D005188 5.2e-97 358.2 254 68.9
Cc06_g19790 Coffea canephora HOM05D004207 ORTHO05D005188 8.9e-97 357.5 258 69.4
Prupe.1G554500 Prunus persica HOM05D004207 ORTHO05D005188 1.2e-96 357.1 253 67.6
CANSAT64G1578 Cannabis sativa HOM05D004207 ORTHO05D005188 1.5e-96 356.7 256 69.1
MD12G1095500 Malus domestica HOM05D004207 ORTHO05D005188 2.6e-96 355.9 253 67.2
Prupe.2G101700 Prunus persica HOM05D004207 ORTHO05D005188 2.6e-96 355.9 253 67.6
MELO3C019096.2 Cucumis melo HOM05D004207 ORTHO05D005188 5.7e-96 354.8 260 67.3
SGA_v2.0_scaffold69G23162 Striga asiatica HOM05D004207 ORTHO05D005188 5.7e-96 354.8 246 70.3
Eucgr.K01646 Eucalyptus grandis HOM05D004207 ORTHO05D005188 7.5e-96 354.4 255 67.8
Oeu021494.1 Olea europaea HOM05D004207 ORTHO05D005188 7.5e-96 354.4 263 69.2
Gohir.A02G105901 Gossypium hirsutum HOM05D004207 ORTHO05D005188 4.9e-95 351.7 254 69.3
Lsat_1_v5_gn_2_54201 Lactuca sativa HOM05D004207 ORTHO05D005188 1.4e-94 350.1 253 68.4
Atru.chr1.1398 Acer truncatum HOM05D004207 ORTHO05D005188 1.8e-94 349.7 254 68.5
Ciclev10011666m.g Citrus clementina HOM05D004207 ORTHO05D005188 1.8e-94 349.7 254 68.5
Thecc.05G127200 Theobroma cacao HOM05D004207 ORTHO05D005188 7.0e-94 347.8 254 67.7
Gohir.D03G072800 Gossypium hirsutum HOM05D004207 ORTHO05D005188 1.2e-93 347.1 254 68.5
Gorai.003G087000 Gossypium raimondii HOM05D004207 ORTHO05D005188 1.2e-93 347.1 254 68.5
VMungo0720G0799 Vigna mungo HOM05D004207 ORTHO05D005188 1.2e-93 347.1 254 68.9
HanXRQChr14g0437711 Helianthus annuus HOM05D004207 ORTHO05D005188 2.0e-93 346.3 254 68.5
Glyma.02G162900 Glycine max HOM05D004207 ORTHO05D005188 4.6e-93 345.1 254 70.1
Ca_25841_v3 Cicer arietinum L. HOM05D004207 ORTHO05D005188 2.3e-92 342.8 254 68.9
PSO384G4208 Papaver somniferum HOM05D004207 ORTHO05D005188 1.1e-91 340.5 252 65.9
RcHm_v2.0_Chr1g0339511 Rosa chinensis HOM05D004207 ORTHO05D005188 1.1e-91 340.5 256 66.8
PGR142G0266 Punica granatum HOM05D004207 ORTHO05D005188 2.5e-91 339.3 255 65.5
AUR62030295 Chenopodium quinoa HOM05D004207 ORTHO05D005188 4.3e-91 338.6 251 65.3
ClCG04G005620 Citrullus lanatus HOM05D004207 ORTHO05D005188 9.5e-91 337.4 227 71.4
PSO339G0215 Papaver somniferum HOM05D004207 ORTHO05D005188 9.5e-91 337.4 252 65.1
Phvul.007G243300 Phaseolus vulgaris HOM05D004207 ORTHO05D005188 1.6e-90 336.7 254 67.3
AUR62018367 Chenopodium quinoa HOM05D004207 ORTHO05D005188 2.8e-90 335.9 251 64.9
Psat7g005160 Pisum sativum HOM05D004207 ORTHO05D005188 2.8e-90 335.9 255 66.3
Medtr8g106395 Medicago truncatula HOM05D004207 ORTHO05D005188 8.0e-90 334.3 254 66.5
FvH4_2g10400 Fragaria vesca HOM05D004207 ORTHO05D005188 1.4e-89 333.6 249 67.1
Hund24581 Selenicereus undatus HOM05D004207 ORTHO05D005188 1.8e-89 333.2 251 62.9
THA.LOC104824395 Tarenaya hassleriana HOM05D004207 ORTHO05D005188 2.3e-89 332.8 252 62.3
TAR633G0823 Trochodendron aralioides HOM05D004207 ORTHO05D005188 2.3e-89 332.8 191 82.2
FAN24G1611 Fragaria x ananassa HOM05D004207 ORTHO05D005188 3.1e-89 332.4 248 67.3
Lalb_Chr14g0365741 Lupinus albus HOM05D004207 ORTHO05D005188 4.0e-89 332.0 254 64.6
TPR.G5525 Trifolium pratense HOM05D004207 ORTHO05D005188 8.9e-89 330.9 275 63.3
arahy.Tifrunner.gnm1.ann1.I2Z9WV Arachis hypogaea HOM05D004207 ORTHO05D005188 1.5e-88 330.1 247 66.8
arahy.Tifrunner.gnm1.ann1.U0ATL0 Arachis hypogaea HOM05D004207 ORTHO05D005188 1.5e-88 330.1 247 68.0
FAN15G2977 Fragaria x ananassa HOM05D004207 ORTHO05D005188 2.6e-88 329.3 246 65.9
CsaV3_4G029510 Cucumis sativus L. HOM05D004207 ORTHO05D005188 7.5e-88 327.8 227 70.5
EL10Ac3g07257 Beta vulgaris HOM05D004207 ORTHO05D005188 9.8e-88 327.4 250 61.6
FAN20G2214 Fragaria x ananassa HOM05D004207 ORTHO05D005188 9.8e-88 327.4 248 64.5
Thhalv10016761m.g Eutrema salsugineum HOM05D004207 ORTHO05D005188 2.2e-87 326.2 252 62.3
AL4G39120 Arabidopsis lyrata HOM05D004207 ORTHO05D005188 8.3e-87 324.3 246 62.6
THA.LOC104803259 Tarenaya hassleriana HOM05D004207 ORTHO05D005188 1.4e-86 323.6 252 62.7
unitig_744.g24179 Utricularia gibba HOM05D004207 ORTHO05D005188 1.4e-86 323.6 239 65.7
Carub.0004s2346 Capsella rubella HOM05D004207 ORTHO05D005188 4.1e-86 322.0 252 61.5
Sed0024335 Sechium edule HOM05D004207 ORTHO05D005188 4.1e-86 322.0 268 60.1
Glyma.09G026700 Glycine max HOM05D004207 ORTHO05D005188 9.2e-86 320.9 254 67.3
arahy.Tifrunner.gnm1.ann1.6G7KL6 Arachis hypogaea HOM05D004207 ORTHO05D005188 1.6e-85 320.1 247 66.0
arahy.Tifrunner.gnm1.ann1.1DJ9GZ Arachis hypogaea HOM05D004207 ORTHO05D005188 7.8e-85 317.8 246 65.4
FAN18G2175 Fragaria x ananassa HOM05D004207 ORTHO05D005188 1.0e-84 317.4 249 65.5
CDE02G0307 Ceratophyllum demersum HOM05D004207 ORTHO05D005188 2.3e-84 316.2 209 71.8
AL5G38110 Arabidopsis lyrata HOM05D004207 ORTHO05D005188 3.0e-84 315.8 249 62.7
FvH4_5g30880 Fragaria vesca HOM05D004207 ORTHO05D005188 3.0e-84 315.8 250 64.8
AT3G56750 Arabidopsis thaliana HOM05D004207 ORTHO05D005188 6.6e-84 314.7 252 61.9
Lj2A402G44 Lonicera japonica HOM05D004207 ORTHO05D005188 6.6e-84 314.7 219 70.3
Carub.0005s2349 Capsella rubella HOM05D004207 ORTHO05D005188 8.6e-84 314.3 252 61.9
AT2G41150 Arabidopsis thaliana HOM05D004207 ORTHO05D005188 1.5e-83 313.5 252 60.3
BcaC07g39983 Brassica carinata HOM05D004207 ORTHO05D005188 5.6e-83 311.6 252 61.5
Sp5g05820 Schrenkiella parvula HOM05D004207 ORTHO05D005188 7.3e-83 311.2 252 60.7
Aa31LG10G11590 Aethionema arabicum HOM05D004207 ORTHO05D005188 1.2e-82 310.5 252 58.7
C08p31970 Brassica napus HOM05D004207 ORTHO05D005188 2.1e-82 309.7 252 61.1
BcaC07g40120 Brassica carinata HOM05D004207 ORTHO05D005188 3.6e-82 308.9 252 60.7
BcaC08g44805 Brassica carinata HOM05D004207 ORTHO05D005188 1.8e-81 306.6 252 59.9
BolC6t37545H Brassica oleracea HOM05D004207 ORTHO05D005188 1.8e-81 306.6 252 59.9
BcaB02g07638 Brassica carinata HOM05D004207 ORTHO05D005188 2.3e-81 306.2 252 59.5
A07p23050 Brassica napus HOM05D004207 ORTHO05D005188 6.8e-81 304.7 252 59.5
C06p23760 Brassica napus HOM05D004207 ORTHO05D005188 6.8e-81 304.7 252 59.5
CARHR136240 Cardamine hirsuta HOM05D004207 ORTHO05D005188 8.9e-81 304.3 253 60.9
Thhalv10006019m.g Eutrema salsugineum HOM05D004207 ORTHO05D005188 8.9e-81 304.3 252 60.3
Sc13g0001060 Simmondsia chinensis HOM05D004207 ORTHO05D005188 2.0e-80 303.1 186 74.7
BraA07t29968Z Brassica rapa HOM05D004207 ORTHO05D005188 4.4e-80 302.0 252 58.7
Lj6C571T2 Lonicera japonica HOM05D004207 ORTHO05D005188 5.8e-80 301.6 218 69.7
ATR0307G046 Amborella trichopoda HOM05D004207 ORTHO05D005188 2.2e-79 299.7 184 75.5
Lj5g0028239 Lotus japonicus HOM05D004207 ORTHO05D005188 2.9e-79 299.3 246 61.0
SHI31312 Sapria himalayana HOM05D004207 ORTHO05D005188 6.4e-79 298.1 246 60.6
A05p02060 Brassica napus HOM05D004207 ORTHO05D005188 9.2e-78 294.3 253 58.9
Ah.04g150870 Amaranthus hybridus HOM05D000591 ORTHO05D000579 2.7e-77 292.7 178 74.2
Ah.13g077190 Amaranthus hybridus HOM05D002757 ORTHO05D003252 1.3e-76 290.4 177 73.4
BraA05t19202Z Brassica rapa HOM05D004207 ORTHO05D005188 1.3e-76 290.4 253 58.1
BcaC02g12755 Brassica carinata HOM05D004207 ORTHO05D005188 3.0e-76 289.3 254 57.5
C04p02450 Brassica napus HOM05D004207 ORTHO05D005188 9.5e-75 284.3 253 56.9
BolC4t21890H Brassica oleracea HOM05D004207 ORTHO05D005188 2.8e-74 282.7 253 56.5
SEGI_12806 Sequoiadendron giganteum HOM05D004207 ORTHO05D005188 4.7e-74 282.0 239 58.6
ECA238G2339 Erigeron canadensis HOM05D004207 ORTHO05D000645 6.8e-73 278.1 165 80.0
SGA_v2.0_scaffold66G22265 Striga asiatica HOM05D004207 ORTHO05D002907 1.4e-70 270.4 252 56.7
Os03g0366700 Oryza sativa ssp. japonica HOM05D004207 ORTHO05D005188 3.5e-69 265.8 186 65.1
Zm00001eb017860 Zea mays HOM05D004207 ORTHO05D005188 1.3e-68 263.8 241 54.4
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 8.6e-68 261.2 173 69.4
BraA09t40412Z Brassica rapa HOM05D004207 ORTHO05D005188 9.6e-67 257.7 217 60.8
BolC8t50815H Brassica oleracea HOM05D004207 ORTHO05D005188 2.8e-66 256.1 217 59.9
CiPaw.09G048900 Carya illinoinensis HOM05D004207 ORTHO05D005188 5.2e-65 251.9 149 79.2
Haze_20240 Corylus avellana HOM05D004207 ORTHO05D005188 5.8e-64 248.4 141 84.4
TAR071G0001 Trochodendron aralioides HOM05D004207 ORTHO05D005188 2.9e-63 246.1 169 71.0
BcaB06g27278 Brassica carinata HOM05D004207 ORTHO05D005188 6.4e-63 245.0 194 61.3
TWI53G0562 Tripterygium wilfordii HOM05D004207 ORTHO05D005188 5.3e-57 225.3 253 51.4
Peaxi162Scf00003g04926 Petunia axillaris HOM05D004207 ORTHO05D005188 4.5e-56 222.2 253 50.2
Zm00001eb109900 Zea mays HOM05D004207 ORTHO05D005188 1.3e-52 210.7 163 59.5
AagrBONN_evm.TU.Sc2ySwM_362.2903 Anthoceros agrestis HOM05D004207 ORTHO05D005188 2.1e-50 203.4 186 51.1
CARHR159490 Cardamine hirsuta HOM05D004207 ORTHO05D005188 6.2e-50 201.8 137 67.9
SMO119G0213 Selaginella moellendorffii HOM05D004207 ORTHO05D005188 8.1e-50 201.4 197 48.7
QL06p027270 Quercus lobata HOM05D004207 ORTHO05D005188 7.6e-48 194.9 147 66.0
Os07g0641000 Oryza sativa ssp. japonica HOM05D004207 ORTHO05D005188 1.7e-47 193.7 147 61.2
Pp3c2_30150 Physcomitrium patens HOM05D004207 ORTHO05D005188 1.5e-43 180.6 237 42.2
CSS0011177 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 2.8e-42 176.4 106 76.4
CSS0022112 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 2.8e-42 176.4 106 76.4
CSS0017049 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 3.7e-42 176.0 106 76.4
A09p49590 Brassica napus HOM05D004207 ORTHO05D005188 8.2e-42 174.9 252 41.3
CSS0007811 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 1.4e-41 174.1 106 75.5
CSS0037189 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 9.0e-41 171.4 106 75.5
MD14G1091500 Malus domestica HOM05D004207 ORTHO05D005188 1.3e-39 167.5 241 40.7
FAN04G1206 Fragaria x ananassa HOM05D004207 ORTHO05D005188 1.0e-36 157.9 110 69.1
BcaC01g05358 Brassica carinata HOM05D004207 ORTHO05D005188 1.7e-31 140.6 102 61.8
Cc00_g24130 Coffea canephora HOM05D004207 ORTHO05D005188 2.9e-31 139.8 95 70.5
Cc00_g13290 Coffea canephora HOM05D004207 ORTHO05D005188 5.1e-28 129.0 89 71.9
CDE08G0867 Ceratophyllum demersum HOM05D004207 ORTHO05D005188 6.5e-23 112.1 79 63.3
Nn2g14966 Nelumbo nucifera HOM05D004207 ORTHO05D005188 6.5e-23 112.1 113 54.9
FAN27G3487 Fragaria x ananassa HOM05D004207 ORTHO05D005188 4.8e-18 95.9 246 31.7
Cc06_g19690 Coffea canephora HOM05D004207 ORTHO05D005188 6.9e-17 92.0 124 44.4
Zm00001eb328890 Zea mays HOM05D004207 ORTHO05D005188 2.4e-09 67.0 36 80.6


User provided reference genes

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