Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 3.2e-248 861.3 438 100.0
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 3.4e-133 479.2 836 41.5
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 8.9e-89 331.6 830 33.5
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 1.4e-86 324.3 836 32.2
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 7.8e-85 318.5 865 32.0
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 1.1e-83 314.7 840 31.5
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 5.4e-78 295.8 828 31.2
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 7.8e-77 292.0 810 30.6
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 3.9e-76 289.7 810 30.5
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 5.4e-70 269.2 251 58.2
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 5.1e-68 262.7 799 29.4
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 1.5e-67 261.2 322 49.1
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 3.3e-67 260.0 817 29.5
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 3.3e-67 260.0 839 29.3
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 3.6e-66 256.5 830 28.9
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 3.1e-65 253.4 846 31.4
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 4.0e-65 253.1 827 28.5
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 4.0e-65 253.1 840 29.4
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 6.8e-65 252.3 824 28.9
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.5e-64 251.1 872 28.3
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 2.0e-64 250.8 834 28.4
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 2.0e-64 250.8 873 28.4
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.6e-64 250.4 827 28.7
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 3.4e-64 250.0 323 45.2
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.3e-63 248.1 696 33.9
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 3.8e-63 246.5 821 27.6
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 4.9e-63 246.1 778 29.7
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 6.4e-63 245.7 824 27.9
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 6.4e-63 245.7 840 28.6
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 1.1e-62 245.0 832 28.2
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 1.9e-62 244.2 839 26.9
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 3.2e-62 243.4 835 28.4
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 4.2e-62 243.0 834 27.9
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 4.2e-62 243.0 840 28.3
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 5.4e-62 242.7 806 27.8
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 7.1e-62 242.3 815 29.7
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 7.1e-62 242.3 328 46.3
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 9.3e-62 241.9 814 28.5
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 4.6e-61 239.6 837 27.1
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 4.6e-61 239.6 833 26.9
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 5.1e-60 236.1 331 44.7
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 5.1e-60 236.1 841 27.0
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.1e-59 235.0 837 28.1
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 1.5e-59 234.6 249 56.6
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 1.9e-59 234.2 849 27.2
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 5.6e-59 232.6 838 28.2
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 5.3e-57 226.1 329 43.2
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 5.3e-57 226.1 837 27.8
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 9.0e-57 225.3 828 27.4
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 4.4e-56 223.0 831 28.0
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 8.4e-55 218.8 324 43.2
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 1.4e-54 218.0 832 26.0
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 1.9e-54 217.6 835 26.0
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 1.9e-54 217.6 830 26.6
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 1.9e-54 217.6 833 26.5
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 2.4e-54 217.2 839 26.9
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 3.2e-54 216.9 333 43.5
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 5.4e-54 216.1 820 28.3
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 7.1e-54 215.7 324 43.8
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 7.1e-54 215.7 820 28.0
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.2e-53 214.9 821 27.9
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 3.5e-53 213.4 841 28.4
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 7.9e-53 212.2 820 27.9
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 7.9e-53 212.2 834 26.5
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 1.7e-52 211.1 488 34.0
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 2.3e-52 210.7 815 26.0
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 5.1e-52 209.5 321 43.6
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 3.3e-51 206.8 324 41.0
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 9.6e-51 205.3 782 26.3
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 2.1e-50 204.1 323 42.1
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 2.1e-50 204.1 808 25.9
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 3.6e-50 203.4 313 40.6
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 2.4e-49 200.7 301 41.5
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 4.0e-49 199.9 300 42.3
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 9.0e-49 198.7 185 58.4
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 1.2e-48 198.4 782 27.0
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 1.2e-48 198.4 837 25.7
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 1.2e-48 198.4 784 26.3
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 2.0e-48 197.6 780 26.7
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 4.9e-47 193.0 314 40.1
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 1.4e-46 191.4 789 27.0
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 3.2e-46 190.3 258 45.7
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 5.4e-46 189.5 803 25.8
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 1.6e-45 188.0 781 26.2
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 2.1e-45 187.6 768 25.8
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 2.1e-45 187.6 768 25.9
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 3.5e-45 186.8 769 25.9
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 3.5e-45 186.8 769 25.9
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 6.7e-44 182.6 764 25.5
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 2.5e-43 180.6 793 25.5
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 2.5e-43 180.6 251 42.2
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 5.6e-43 179.5 322 37.6
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 2.1e-42 177.6 792 24.7
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 8.1e-42 175.6 257 42.4
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 1.8e-41 174.5 222 47.3
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 1.7e-39 167.9 800 25.1
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 3.8e-39 166.8 333 36.3
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 6.5e-39 166.0 259 39.4
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 6.5e-39 166.0 310 37.4
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 4.6e-37 159.8 428 31.8
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 1.0e-36 158.7 776 25.4
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 3.0e-36 157.1 318 35.8
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 6.7e-36 156.0 311 36.0
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 2.5e-35 154.1 302 36.1
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 3.4e-32 143.7 314 34.7
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 2.2e-31 141.0 331 32.0
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 2.2e-31 141.0 785 24.2
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 2.1e-29 134.4 152 48.7
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 6.1e-29 132.9 153 47.7
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.3e-28 131.7 139 52.5
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.8e-28 131.3 159 49.7
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 2.5e-27 127.5 167 42.5
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 4.3e-27 126.7 171 43.9
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 7.4e-27 125.9 157 48.4
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 4.8e-26 123.2 285 33.3
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 1.1e-25 122.1 164 43.9
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 2.4e-25 120.9 282 33.7
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 6.9e-25 119.4 304 30.6
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 3.2e-22 110.5 77 68.8
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 2.3e-20 104.4 155 38.7
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 2.2e-18 97.8 123 43.9
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 1.2e-16 92.0 107 43.9
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 2.9e-15 87.4 137 39.4
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 1.2e-13 82.0 108 45.4
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 2.8e-10 70.9 244 29.5
Ah.06g195260 Amaranthus hybridus HOM05D005855 ORTHO05D006406 9.1e-09 65.9 133 35.3
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 1.1e-06 58.9 47 59.6
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 3.2e-06 57.4 86 39.5


User provided reference genes

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