Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29065 Davidia involucrata HOM05D003192 ORTHO05D003596 2.1e-170 602.4 333 100.0
Dinv24148 Davidia involucrata HOM05D003192 ORTHO05D003596 4.8e-127 458.4 467 64.0
Dinv20194 Davidia involucrata HOM05D003192 ORTHO05D003596 9.4e-99 364.4 202 100.0
CSS0047518 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 7.2e-91 338.2 467 48.6
CSS0015843 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 2.7e-90 336.3 467 48.2
Lj5C230T2 Lonicera japonica HOM05D003192 ORTHO05D003596 1.8e-81 307.0 467 45.8
Hma1.2p1_1093F.1_g256220 Hydrangea macrophylla HOM05D003192 ORTHO05D003596 6.8e-73 278.5 438 46.6
Actinidia02392 Actinidia chinensis HOM05D003192 ORTHO05D003596 2.6e-72 276.6 466 42.5
Cfa005735 Carpinus fangiana HOM05D003192 ORTHO05D003596 1.7e-71 273.9 459 42.7
QL11p025213 Quercus lobata HOM05D003192 ORTHO05D003596 2.7e-69 266.5 466 42.7
Dinv16002 Davidia involucrata HOM05D003192 ORTHO05D003596 1.3e-68 264.2 297 57.9
MD05G1047500 Malus domestica HOM05D003192 ORTHO05D003596 4.3e-67 259.2 465 40.4
CiPaw.05G029500 Carya illinoinensis HOM05D003192 ORTHO05D003596 2.1e-66 256.9 464 40.9
Haze_10522 Corylus avellana HOM05D003192 ORTHO05D003596 3.1e-65 253.1 459 41.2
Aqoxy5G01385 Aquilegia oxysepala HOM05D003192 ORTHO05D003596 1.5e-64 250.8 470 39.4
Nitab4.5_0002017g0020 Nicotiana tabacum HOM05D003192 ORTHO05D003596 3.4e-64 249.6 470 38.5
AUR62027110 Chenopodium quinoa HOM05D003192 ORTHO05D003596 1.2e-61 241.1 461 37.5
Duzib147G1583 Durio zibethinus HOM05D003192 ORTHO05D003596 1.2e-61 241.1 467 37.7
Nitab4.5_0008998g0020 Nicotiana tabacum HOM05D003192 ORTHO05D003596 2.7e-61 240.0 460 38.5
QL11p025224 Quercus lobata HOM05D003192 ORTHO05D003596 1.0e-60 238.0 453 39.3
Migut.B00551 Erythranthe guttata HOM05D003192 ORTHO05D003596 5.0e-60 235.7 461 39.5
Prupe.8G069900 Prunus persica HOM05D003192 ORTHO05D003596 1.1e-59 234.6 464 39.0
MBI16_g12462_MAGBIO Magnolia biondii HOM05D003192 ORTHO05D003596 1.9e-59 233.8 464 37.9
Atru.chr6.1263 Acer truncatum HOM05D003192 ORTHO05D003596 9.5e-59 231.5 463 38.2
PGSC0003DMG400037454 Solanum tuberosum HOM05D003192 ORTHO05D003596 2.3e-57 226.9 456 38.4
Solyc10g047540.3 Solanum lycopersicum HOM05D003192 ORTHO05D003596 3.1e-57 226.5 452 38.3
Sopen10g017840 Solanum pennellii HOM05D003192 ORTHO05D003596 3.1e-57 226.5 456 38.8
MSTRG.20280 Avicennia marina HOM05D003192 ORTHO05D003596 5.2e-57 225.7 465 37.2
Manes.10G098500 Manihot esculenta HOM05D003192 ORTHO05D003596 5.2e-57 225.7 465 37.0
EL10Ac9g22072 Beta vulgaris HOM05D003192 ORTHO05D003596 1.5e-56 224.2 461 37.1
Nn5g29883 Nelumbo nucifera HOM05D003192 ORTHO05D003596 2.0e-56 223.8 471 38.2
PSO210G4022 Papaver somniferum HOM05D003192 ORTHO05D003596 2.6e-56 223.4 510 33.7
AUR62012886 Chenopodium quinoa HOM05D003192 ORTHO05D003596 1.3e-55 221.1 461 36.0
PSO170G5608 Papaver somniferum HOM05D003192 ORTHO05D003596 1.3e-55 221.1 510 33.9
Sc08g0003910 Simmondsia chinensis HOM05D003192 ORTHO05D003596 1.3e-55 221.1 462 35.9
ECA234G2607 Erigeron canadensis HOM05D003192 ORTHO05D003596 1.7e-55 220.7 464 36.2
Rhsim10G0172900 Rhododendron simsii HOM05D003192 ORTHO05D003596 6.4e-55 218.8 470 36.8
TAR625G0274 Trochodendron aralioides HOM05D003192 ORTHO05D003596 1.4e-54 217.6 470 39.8
TAR381G0021 Trochodendron aralioides HOM05D003192 ORTHO05D003596 1.9e-54 217.2 470 38.1
Gohir.A11G050500 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.2e-53 214.5 466 35.2
CiPaw.08G140100 Carya illinoinensis HOM05D003192 ORTHO05D003596 1.0e-52 211.5 470 36.4
MD10G1054400 Malus domestica HOM05D003192 ORTHO05D003596 1.3e-52 211.1 465 37.0
Manes.13G100000 Manihot esculenta HOM05D003192 ORTHO05D003596 5.1e-52 209.1 468 36.3
Potri.001G415800 Populus trichocarpa HOM05D003192 ORTHO05D003596 6.6e-52 208.8 468 36.1
Glyma.15G058300 Glycine max HOM05D003192 ORTHO05D003596 1.1e-51 208.0 468 36.3
Potri.011G131500 Populus trichocarpa HOM05D003192 ORTHO05D003596 2.5e-51 206.8 460 36.7
Duzib187G1957 Durio zibethinus HOM05D003192 ORTHO05D003596 5.6e-51 205.7 469 35.6
Peaxi162Scf00003g00329 Petunia axillaris HOM05D003192 ORTHO05D003596 1.2e-50 204.5 416 36.8
Dinv13601 Davidia involucrata HOM05D003192 ORTHO05D003596 1.6e-50 204.1 470 36.2
Ah.01g007410 Amaranthus hybridus HOM05D003192 ORTHO05D003596 2.8e-50 203.4 462 34.6
Lalb_Chr20g0122921 Lupinus albus HOM05D003192 ORTHO05D003596 2.8e-50 203.4 436 38.3
CANSAT54G2948 Cannabis sativa HOM05D003192 ORTHO05D003596 6.2e-50 202.2 459 34.0
Glyma.13G256600 Glycine max HOM05D003192 ORTHO05D003596 6.2e-50 202.2 465 35.7
DCAR_021912 Daucus carota HOM05D003192 ORTHO05D003596 5.2e-49 199.1 461 35.4
Gohir.D11G053800 Gossypium hirsutum HOM05D003192 ORTHO05D003596 8.9e-49 198.4 466 33.9
SGA_v2.0_scaffold83G26376 Striga asiatica HOM05D003192 ORTHO05D003596 1.7e-47 194.1 447 34.2
Cc07_g14090 Coffea canephora HOM05D003192 ORTHO05D003596 3.7e-47 193.0 466 32.6
Haze_03871 Corylus avellana HOM05D003192 ORTHO05D003596 6.4e-47 192.2 374 39.0
Phvul.006G201900 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 8.3e-47 191.8 467 35.3
Gorai.007G058900 Gossypium raimondii HOM05D003192 ORTHO05D003596 1.9e-46 190.7 466 33.3
VMungo0299G0001 Vigna mungo HOM05D003192 ORTHO05D003596 1.9e-46 190.7 467 35.3
RcHm_v2.0_Chr6g0271001 Rosa chinensis HOM05D003192 ORTHO05D003596 2.4e-46 190.3 461 35.1
Cfa006881 Carpinus fangiana HOM05D003192 ORTHO05D003596 4.1e-46 189.5 375 39.5
Gohir.A11G207000 Gossypium hirsutum HOM05D003192 ORTHO05D003596 7.1e-46 188.7 467 34.9
Actinidia06514 Actinidia chinensis HOM05D003192 ORTHO05D003596 1.2e-45 188.0 388 38.1
Gohir.D11G216300 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.6e-45 187.6 467 34.5
QL06p035789 Quercus lobata HOM05D003192 ORTHO05D003596 2.1e-45 187.2 370 39.5
Prupe.6G201700 Prunus persica HOM05D003192 ORTHO05D003596 4.6e-45 186.0 372 39.8
Thhalv10027141m.g Eutrema salsugineum HOM05D003192 ORTHO05D003596 6.0e-45 185.7 469 33.3
arahy.Tifrunner.gnm1.ann1.T6BZ3D Arachis hypogaea HOM05D003192 ORTHO05D003596 1.3e-44 184.5 371 38.8
CSS0015283 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 2.3e-44 183.7 467 34.5
Actinidia25308 Actinidia chinensis HOM05D003192 ORTHO05D003596 3.9e-44 183.0 467 34.7
Aa31LG6G15020 Aethionema arabicum HOM05D003192 ORTHO05D003596 1.9e-43 180.6 468 32.7
THA.LOC104807671 Tarenaya hassleriana HOM05D003192 ORTHO05D003596 3.3e-43 179.9 371 37.2
HanXRQChr10g0289971 Helianthus annuus HOM05D003192 ORTHO05D003596 4.3e-43 179.5 380 35.8
Sp7g35710 Schrenkiella parvula HOM05D003192 ORTHO05D003596 4.3e-43 179.5 469 32.6
CANSAT01G3047 Cannabis sativa HOM05D003192 ORTHO05D003596 7.3e-43 178.7 369 36.0
Thecc.01G090500 Theobroma cacao HOM05D003192 ORTHO05D003596 7.3e-43 178.7 467 32.8
SGA_v2.0_scaffold115G32126 Striga asiatica HOM05D003192 ORTHO05D003596 9.6e-43 178.3 436 33.5
MSTRG.15688 Avicennia marina HOM05D003192 ORTHO05D003596 1.6e-42 177.6 470 32.3
BcaB03g12309 Brassica carinata HOM05D003192 ORTHO05D003596 6.2e-42 175.6 469 31.8
Gohir.A02G144501 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.1e-41 174.9 365 36.4
arahy.Tifrunner.gnm1.ann1.CWW4UK Arachis hypogaea HOM05D003192 ORTHO05D003596 2.4e-41 173.7 371 35.8
TWI77G0115 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 5.2e-41 172.6 469 33.3
Atru.chr3.1246 Acer truncatum HOM05D003192 ORTHO05D003596 6.8e-41 172.2 390 35.4
vmacro13008 Vaccinium macrocarpon HOM05D003192 ORTHO05D003596 6.8e-41 172.2 467 32.5
Ciclev10024755m.g Citrus clementina HOM05D003192 ORTHO05D003596 1.5e-40 171.0 394 35.0
FvH4_1g19631 Fragaria vesca HOM05D003192 ORTHO05D003596 2.0e-40 170.6 370 37.0
FAN19G3065 Fragaria x ananassa HOM05D003192 ORTHO05D003596 2.0e-40 170.6 370 37.0
Ca_00164_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 2.6e-40 170.2 467 33.4
Psat1g214080 Pisum sativum HOM05D003192 ORTHO05D003596 2.6e-40 170.2 461 33.4
FvH4_2g11711 Fragaria vesca HOM05D003192 ORTHO05D003596 4.4e-40 169.5 465 33.8
Sabra11G0118600 Salix brachista HOM05D003192 ORTHO05D003596 5.8e-40 169.1 322 40.1
Eucgr.I00559 Eucalyptus grandis HOM05D003192 ORTHO05D003596 2.2e-39 167.2 469 31.1
Carub.0007s0215 Capsella rubella HOM05D003192 ORTHO05D003596 2.9e-39 166.8 469 31.8
CsaV3_6G044990 Cucumis sativus L. HOM05D003192 ORTHO05D003596 1.9e-38 164.1 469 30.3
FAN24G0742 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.9e-38 164.1 465 33.1
BcaC01g00350 Brassica carinata HOM05D003192 ORTHO05D003596 2.4e-38 163.7 370 36.5
FAN26G1555 Fragaria x ananassa HOM05D003192 ORTHO05D003596 3.2e-38 163.3 374 37.2
FAN28G2653 Fragaria x ananassa HOM05D003192 ORTHO05D003596 4.2e-38 162.9 370 37.3
Peaxi162Scf00191g00034 Petunia axillaris HOM05D003192 ORTHO05D003596 4.2e-38 162.9 422 33.6
Sed0023722 Sechium edule HOM05D003192 ORTHO05D003596 4.2e-38 162.9 343 35.6
BraA08t34266Z Brassica rapa HOM05D003192 ORTHO05D003596 5.4e-38 162.5 370 35.7
Nitab4.5_0007624g0010 Nicotiana tabacum HOM05D003192 ORTHO05D003596 7.1e-38 162.2 413 33.9
C03p78760 Brassica napus HOM05D003192 ORTHO05D003596 1.2e-37 161.4 370 35.7
CARHR246480 Cardamine hirsuta HOM05D003192 ORTHO05D003596 1.2e-37 161.4 363 35.8
RcHm_v2.0_Chr2g0111201 Rosa chinensis HOM05D003192 ORTHO05D003596 1.2e-37 161.4 370 36.2
A08p23070 Brassica napus HOM05D003192 ORTHO05D003596 2.1e-37 160.6 371 35.6
TWI53G1641 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 2.1e-37 160.6 330 37.0
BolC3t20120H Brassica oleracea HOM05D003192 ORTHO05D003596 3.5e-37 159.8 370 35.9
MELO3C007714.2 Cucumis melo HOM05D003192 ORTHO05D003596 3.5e-37 159.8 469 31.1
ClCG01G018360 Citrullus lanatus HOM05D003192 ORTHO05D003596 4.6e-37 159.5 470 31.1
AT4G38062 Arabidopsis thaliana HOM05D003192 ORTHO05D003596 6.0e-37 159.1 469 31.1
Nitab4.5_0004153g0070 Nicotiana tabacum HOM05D003192 ORTHO05D003596 7.8e-37 158.7 436 32.6
DCAR_014184 Daucus carota HOM05D003192 ORTHO05D003596 1.0e-36 158.3 374 34.0
MD01G1039400 Malus domestica HOM05D003192 ORTHO05D003596 1.0e-36 158.3 452 30.5
Sabra16G0282500 Salix brachista HOM05D003192 ORTHO05D003596 1.0e-36 158.3 416 32.9
Gohir.D03G036033 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.3e-36 157.9 338 36.4
CAN.G1344.16 Capsicum annuum HOM05D003192 ORTHO05D003596 6.6e-36 155.6 439 31.2
Sed0023170 Sechium edule HOM05D003192 ORTHO05D003596 8.7e-36 155.2 469 29.9
Gorai.003G037800 Gossypium raimondii HOM05D003192 ORTHO05D003596 1.1e-35 154.8 373 35.1
PGSC0003DMG400016132 Solanum tuberosum HOM05D003192 ORTHO05D003596 1.1e-35 154.8 363 33.6
unitig_32.g10709 Utricularia gibba HOM05D003192 ORTHO05D003596 8.1e-34 148.7 470 29.1
PSO782G1877 Papaver somniferum HOM05D003192 ORTHO05D003596 1.4e-33 147.9 433 32.8
PSO063G1758 Papaver somniferum HOM05D003192 ORTHO05D003596 1.8e-33 147.5 429 32.9
CDE01G0670 Ceratophyllum demersum HOM05D003192 ORTHO05D003596 3.1e-33 146.7 273 36.6
PGR031G3296 Punica granatum HOM05D003192 ORTHO05D003596 4.0e-33 146.4 373 34.6
HPP92_014211 Vanilla planifolia HOM05D003192 ORTHO05D003596 9.9e-32 141.7 321 34.9
Phvul.003G289000 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 3.8e-31 139.8 470 30.6
Ca_22609_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 1.9e-30 137.5 470 30.2
Glyma.01G023100 Glycine max HOM05D003192 ORTHO05D003596 2.4e-30 137.1 370 31.1
Glyma.18G147000 Glycine max HOM05D003192 ORTHO05D003596 2.4e-30 137.1 469 31.1
Medtr2g009620 Medicago truncatula HOM05D003192 ORTHO05D003596 2.4e-30 137.1 461 30.8
Os03g0691500 Oryza sativa ssp. japonica HOM05D003192 ORTHO05D003596 5.4e-30 136.0 335 32.8
Lj4g0006883 Lotus japonicus HOM05D003192 ORTHO05D003596 1.2e-29 134.8 467 31.3
Sc03g0000330 Simmondsia chinensis HOM05D003192 ORTHO05D003596 4.6e-29 132.9 449 30.3
GSVIVG01005928001 Vitis vinifera HOM05D003192 ORTHO05D003596 1.7e-28 131.0 271 39.1
Ah.01g023960 Amaranthus hybridus HOM05D003192 ORTHO05D003596 3.0e-28 130.2 421 28.7
arahy.Tifrunner.gnm1.ann1.88QBIW Arachis hypogaea HOM05D003192 ORTHO05D003596 3.9e-28 129.8 470 28.7
VMungo0251G1378 Vigna mungo HOM05D003192 ORTHO05D003596 5.1e-28 129.4 470 30.2
Glyma.08G279600 Glycine max HOM05D003192 ORTHO05D003596 6.6e-28 129.0 469 30.3
TPR.G14606 Trifolium pratense HOM05D003192 ORTHO05D003596 1.1e-27 128.3 467 31.7
Gorai.007G232500 Gossypium raimondii HOM05D003192 ORTHO05D003596 3.3e-27 126.7 468 29.9
Zm00001eb053540 Zea mays HOM05D003192 ORTHO05D003596 3.3e-27 126.7 335 31.3
arahy.Tifrunner.gnm1.ann1.Y4FDPH Arachis hypogaea HOM05D003192 ORTHO05D003596 1.3e-26 124.8 470 28.5
HanXRQChr11g0346961 Helianthus annuus HOM05D003192 ORTHO05D003596 2.8e-26 123.6 370 30.0
SEGI_05807 Sequoiadendron giganteum HOM05D003192 ORTHO05D003596 6.2e-26 122.5 374 30.5
ATR0767G239 Amborella trichopoda HOM05D003192 ORTHO05D003596 4.0e-25 119.8 460 27.0
AL7G12570 Arabidopsis lyrata HOM05D003192 ORTHO05D003596 1.2e-24 118.2 470 28.3
TPR.G9507 Trifolium pratense HOM05D003192 ORTHO05D003596 5.8e-24 115.9 465 28.6
Medtr8g471150 Medicago truncatula HOM05D003192 ORTHO05D003596 3.8e-23 113.2 470 29.4
QL01p016133 Quercus lobata HOM05D003192 ORTHO05D003596 4.2e-22 109.8 198 41.9
Lalb_Chr05g0228511 Lupinus albus HOM05D003192 ORTHO05D003596 9.3e-22 108.6 277 33.9
Lj2P534T21 Lonicera japonica HOM05D003192 ORTHO05D003596 1.6e-21 107.8 185 38.9
ECA233G2454 Erigeron canadensis HOM05D000169 ORTHO05D003596 3.5e-21 106.7 409 26.4
Psat4g119640 Pisum sativum HOM05D003192 ORTHO05D003596 4.6e-21 106.3 374 30.7
Zm00001eb217110 Zea mays HOM05D003192 ORTHO05D003596 1.8e-20 104.4 270 32.2
AUR62003664 Chenopodium quinoa HOM05D003192 ORTHO05D003596 2.3e-20 104.0 160 42.5
Oeu063542.1 Olea europaea HOM05D003192 ORTHO05D003596 3.9e-20 103.2 304 30.9
HPP92_026470 Vanilla planifolia HOM05D003192 ORTHO05D003596 2.5e-19 100.5 321 30.5
Migut.K00798 Erythranthe guttata HOM05D003192 ORTHO05D003596 4.3e-19 99.8 477 26.6
Lsat_1_v5_gn_2_70360 Lactuca sativa HOM05D003192 ORTHO05D003596 4.3e-19 99.8 330 29.1
ECA238G4297 Erigeron canadensis HOM05D003192 ORTHO05D003596 5.6e-19 99.4 375 26.7
AUR62017973 Chenopodium quinoa HOM05D003192 ORTHO05D003596 9.6e-19 98.6 173 38.7
FAN23G2850 Fragaria x ananassa HOM05D003192 ORTHO05D003596 9.6e-19 98.6 203 36.5
Lsat_1_v5_gn_5_109820 Lactuca sativa HOM05D003192 ORTHO05D003596 5.3e-17 92.8 333 28.8
Solyc11g010620.3 Solanum lycopersicum HOM05D003192 ORTHO05D003596 5.8e-16 89.4 257 30.4
arahy.Tifrunner.gnm1.ann1.ND4N8X Arachis hypogaea HOM05D003192 ORTHO05D003596 2.2e-15 87.4 406 27.1
arahy.Tifrunner.gnm1.ann1.QT15T4 Arachis hypogaea HOM05D003192 ORTHO05D003596 2.2e-15 87.4 406 27.1
Sopen11g005420 Solanum pennellii HOM05D003192 ORTHO05D003596 3.8e-15 86.7 467 24.6
EL10Ac6g15204 Beta vulgaris HOM05D003192 ORTHO05D003596 1.1e-14 85.1 271 28.0
Lalb_Chr05g0216371 Lupinus albus HOM05D003192 ORTHO05D003596 2.5e-14 84.0 390 26.2
Mapoly0094s0016 Marchantia polymorpha HOM05D003192 ORTHO05D003596 1.2e-13 81.6 124 37.9
Actinidia37399 Actinidia chinensis HOM05D003192 ORTHO05D038065 3.5e-13 80.1 67 62.7
Ah.02g123570 Amaranthus hybridus HOM05D003192 ORTHO05D003596 6.0e-13 79.3 194 31.4
Glyma.09G199232 Glycine max HOM05D003192 ORTHO05D003596 7.9e-13 79.0 189 31.7
Ah.03g139960 Amaranthus hybridus HOM05D003192 ORTHO05D003596 3.0e-12 77.0 234 27.4
Lj6g0024173 Lotus japonicus HOM05D003192 ORTHO05D003596 7.4e-11 72.4 459 25.7
Pp3c14_17140 Physcomitrium patens HOM05D003192 ORTHO05D003596 1.3e-10 71.6 150 31.3
Atru.chr6.1256 Acer truncatum HOM05D003192 ORTHO05D003596 1.6e-10 71.2 151 37.7
Phvul.002G147100 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 2.8e-10 70.5 371 26.4
Ca_22705_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 4.8e-10 69.7 264 28.4
FAN23G2642 Fragaria x ananassa HOM05D003192 ORTHO05D003596 5.8e-08 62.8 133 39.1
Medtr5g032080 Medicago truncatula HOM05D003192 ORTHO05D003596 3.8e-07 60.1 224 30.8


User provided reference genes

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