Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29028 Davidia involucrata HOM05D003770 ORTHO05D004424 9.3e-74 280.0 133 100.0
Nn3g19345 Nelumbo nucifera HOM05D003770 ORTHO05D004424 6.2e-70 267.3 133 92.5
ECA233G1784 Erigeron canadensis HOM05D003770 ORTHO05D004424 8.2e-70 266.9 133 94.0
HanXRQChr13g0404801 Helianthus annuus HOM05D003770 ORTHO05D004424 1.1e-69 266.5 133 93.2
Sp1g27720 Schrenkiella parvula HOM05D003770 ORTHO05D004424 1.1e-69 266.5 133 94.0
Actinidia14766 Actinidia chinensis HOM05D003770 ORTHO05D004424 1.4e-69 266.2 133 93.2
BcaB04g18001 Brassica carinata HOM05D003770 ORTHO05D004424 1.4e-69 266.2 133 94.7
A08p09370 Brassica napus HOM05D003770 ORTHO05D004424 1.4e-69 266.2 133 94.7
Duzib084G1234 Durio zibethinus HOM05D003770 ORTHO05D004424 1.4e-69 266.2 133 94.0
Oeu002044.1 Olea europaea HOM05D003770 ORTHO05D004424 1.4e-69 266.2 133 94.0
BcaB03g13770 Brassica carinata HOM05D003770 ORTHO05D004424 1.8e-69 265.8 133 94.0
A05p25300 Brassica napus HOM05D003770 ORTHO05D004424 1.8e-69 265.8 133 94.0
BraA05t21415Z Brassica rapa HOM05D003770 ORTHO05D004424 1.8e-69 265.8 133 94.0
Cpa.g.sc147.1 Carica papaya HOM05D003770 ORTHO05D004424 1.8e-69 265.8 133 92.5
MBI04_g36021_MAGBIO Magnolia biondii HOM05D003770 ORTHO05D004424 2.4e-69 265.4 133 92.5
Aqoxy3G02118 Aquilegia oxysepala HOM05D003770 ORTHO05D004424 3.1e-69 265.0 132 94.7
Manes.17G006674 Manihot esculenta HOM05D003770 ORTHO05D004424 4.0e-69 264.6 129 94.6
BraA08t32935Z Brassica rapa HOM05D003770 ORTHO05D004424 5.3e-69 264.2 133 94.0
CSS0041235 Camellia sinensis var. sinensis HOM05D003770 ORTHO05D004424 6.9e-69 263.8 133 91.7
Lsat_1_v5_gn_6_17740 Lactuca sativa HOM05D003770 ORTHO05D004424 6.9e-69 263.8 133 92.5
MSTRG.25705 Avicennia marina HOM05D003770 ORTHO05D004424 9.0e-69 263.5 133 91.0
BcaC05g27932 Brassica carinata HOM05D003770 ORTHO05D004424 9.0e-69 263.5 133 92.5
C05p39370 Brassica napus HOM05D003770 ORTHO05D004424 9.0e-69 263.5 133 92.5
BolC5t32673H Brassica oleracea HOM05D003770 ORTHO05D004424 9.0e-69 263.5 133 92.5
PGR042G3493 Punica granatum HOM05D003770 ORTHO05D004424 9.0e-69 263.5 133 91.0
TAR374G0482 Trochodendron aralioides HOM05D003770 ORTHO05D004424 9.0e-69 263.5 133 93.2
Duzib205G1159 Durio zibethinus HOM05D003770 ORTHO05D004424 1.2e-68 263.1 133 92.5
THA.LOC104798502 Tarenaya hassleriana HOM05D003770 ORTHO05D004424 1.2e-68 263.1 133 91.7
BcaC07g37635 Brassica carinata HOM05D003770 ORTHO05D004424 1.5e-68 262.7 133 93.2
Carub.0001s3038 Capsella rubella HOM05D003770 ORTHO05D004424 1.5e-68 262.7 133 94.0
Gohir.D03G177400 Gossypium hirsutum HOM05D003770 ORTHO05D004424 1.5e-68 262.7 133 92.5
Gorai.003G186600 Gossypium raimondii HOM05D003770 ORTHO05D004424 1.5e-68 262.7 133 92.5
Gorai.008G222400 Gossypium raimondii HOM05D003770 ORTHO05D004424 1.5e-68 262.7 133 92.5
Lj8A318T48 Lonicera japonica HOM05D003770 ORTHO05D004424 1.5e-68 262.7 133 92.5
Duzib068G0068 Durio zibethinus HOM05D003770 ORTHO05D004424 2.0e-68 262.3 133 92.5
Thhalv10007801m.g Eutrema salsugineum HOM05D003770 ORTHO05D004424 2.0e-68 262.3 133 94.0
Gohir.D12G207000 Gossypium hirsutum HOM05D003770 ORTHO05D004424 2.0e-68 262.3 133 92.5
Rhsim07G0134900 Rhododendron simsii HOM05D003770 ORTHO05D004424 2.0e-68 262.3 133 93.2
BcaB07g32867 Brassica carinata HOM05D003770 ORTHO05D004424 2.6e-68 261.9 133 93.2
BolC8t48008H Brassica oleracea HOM05D003770 ORTHO05D004424 2.6e-68 261.9 133 93.2
Atru.chr6.1571 Acer truncatum HOM05D003770 ORTHO05D004424 3.4e-68 261.5 133 92.5
Aa31LG2G13940 Aethionema arabicum HOM05D003770 ORTHO05D004424 4.5e-68 261.2 133 92.5
Gohir.A12G204600 Gossypium hirsutum HOM05D003770 ORTHO05D004424 4.5e-68 261.2 133 91.7
SalBow1G3665 Salvia bowleyana HOM05D003770 ORTHO05D004424 4.5e-68 261.2 133 91.0
BcaC05g27231 Brassica carinata HOM05D003770 ORTHO05D004424 5.8e-68 260.8 133 92.5
C05p31460 Brassica napus HOM05D003770 ORTHO05D004424 5.8e-68 260.8 133 92.5
BolC5t31869H Brassica oleracea HOM05D003770 ORTHO05D004424 5.8e-68 260.8 133 92.5
Eucgr.E01261 Eucalyptus grandis HOM05D003770 ORTHO05D004424 5.8e-68 260.8 133 91.0
Oeu061069.1 Olea europaea HOM05D003770 ORTHO05D004424 5.8e-68 260.8 133 91.0
A09p34110 Brassica napus HOM05D003770 ORTHO05D004424 7.6e-68 260.4 133 92.5
BraA09t38959Z Brassica rapa HOM05D003770 ORTHO05D004424 7.6e-68 260.4 133 92.5
Gohir.A03G000019 Gossypium hirsutum HOM05D003770 ORTHO05D004424 7.6e-68 260.4 133 91.7
MD06G1023500 Malus domestica HOM05D003770 ORTHO05D004424 7.6e-68 260.4 133 91.7
Sabra03G0067500 Salix brachista HOM05D003770 ORTHO05D004424 7.6e-68 260.4 133 91.0
CARHR031410 Cardamine hirsuta HOM05D003770 ORTHO05D004424 1.0e-67 260.0 133 92.5
HanXRQChr02g0050031 Helianthus annuus HOM05D003770 ORTHO05D004424 1.3e-67 259.6 133 91.7
QL12p000321 Quercus lobata HOM05D003770 ORTHO05D004424 1.3e-67 259.6 132 90.9
Thecc.03G313800 Theobroma cacao HOM05D003770 ORTHO05D004424 1.3e-67 259.6 133 91.0
Actinidia01337 Actinidia chinensis HOM05D003770 ORTHO05D000846 1.7e-67 259.2 133 90.2
CANSAT21G0558 Cannabis sativa HOM05D003770 ORTHO05D004424 1.7e-67 259.2 133 91.7
CANSAT21G0653 Cannabis sativa HOM05D003770 ORTHO05D004424 1.7e-67 259.2 133 91.7
Hma1.2p1_0803F.1_g220690 Hydrangea macrophylla HOM05D003770 ORTHO05D004424 1.7e-67 259.2 133 92.5
Actinidia27273 Actinidia chinensis HOM05D003770 ORTHO05D004424 2.2e-67 258.8 133 91.7
AL1G46130 Arabidopsis lyrata HOM05D003770 ORTHO05D004424 2.2e-67 258.8 129 94.6
AT1G32060 Arabidopsis thaliana HOM05D003770 ORTHO05D004424 2.2e-67 258.8 129 94.6
DCAR_008201 Daucus carota HOM05D003770 ORTHO05D004424 2.2e-67 258.8 133 91.7
GSVIVG01011555001 Vitis vinifera HOM05D003770 ORTHO05D004424 2.2e-67 258.8 133 89.5
MSTRG.11897 Avicennia marina HOM05D003770 ORTHO05D004424 3.8e-67 258.1 133 90.2
Haze_08106 Corylus avellana HOM05D003770 ORTHO05D004424 3.8e-67 258.1 133 90.2
Nn1g01916 Nelumbo nucifera HOM05D003770 ORTHO05D004424 3.8e-67 258.1 133 89.5
CSS0008149 Camellia sinensis var. sinensis HOM05D003770 ORTHO05D004424 4.9e-67 257.7 131 89.3
CSS0016333 Camellia sinensis var. sinensis HOM05D003770 ORTHO05D004424 4.9e-67 257.7 131 89.3
Hma1.2p1_1137F.1_g260650 Hydrangea macrophylla HOM05D003770 ORTHO05D004424 4.9e-67 257.7 133 91.7
Potri.001G134000 Populus trichocarpa HOM05D003770 ORTHO05D004424 4.9e-67 257.7 133 89.5
Potri.003G099400 Populus trichocarpa HOM05D003770 ORTHO05D004424 4.9e-67 257.7 133 89.5
ATR0829G012 Amborella trichopoda HOM05D003770 ORTHO05D004424 6.5e-67 257.3 133 89.5
Cfa012551 Carpinus fangiana HOM05D003770 ORTHO05D004424 6.5e-67 257.3 133 89.5
Eucgr.D02625 Eucalyptus grandis HOM05D003770 ORTHO05D004424 6.5e-67 257.3 133 89.5
RcHm_v2.0_Chr7g0212791 Rosa chinensis HOM05D003770 ORTHO05D004424 6.5e-67 257.3 129 93.0
Ciclev10001344m.g Citrus clementina HOM05D003770 ORTHO05D004424 8.4e-67 256.9 129 91.5
Prupe.5G024600 Prunus persica HOM05D003770 ORTHO05D004424 8.4e-67 256.9 133 91.7
PGR031G2638 Punica granatum HOM05D003770 ORTHO05D004424 8.4e-67 256.9 133 89.5
CiPaw.11G100900 Carya illinoinensis HOM05D003770 ORTHO05D004424 1.1e-66 256.5 133 90.2
ECA240G0263 Erigeron canadensis HOM05D003770 ORTHO05D004424 1.4e-66 256.1 133 87.2
Migut.E01330 Erythranthe guttata HOM05D003770 ORTHO05D004424 1.4e-66 256.1 133 88.7
Nitab4.5_0006395g0030 Nicotiana tabacum HOM05D003770 ORTHO05D004424 1.4e-66 256.1 133 89.5
PSO063G0145 Papaver somniferum HOM05D003770 ORTHO05D004424 1.4e-66 256.1 133 92.5
PSO782G4140 Papaver somniferum HOM05D003770 ORTHO05D004424 1.4e-66 256.1 133 92.5
Ca_25153_v3 Cicer arietinum L. HOM05D003770 ORTHO05D004424 1.9e-66 255.8 132 89.4
FAN04G1074 Fragaria x ananassa HOM05D003770 ORTHO05D004424 1.9e-66 255.8 129 92.2
TWI81G0504 Tripterygium wilfordii HOM05D003770 ORTHO05D004424 1.9e-66 255.8 129 90.7
arahy.Tifrunner.gnm1.ann1.6KVT94 Arachis hypogaea HOM05D003770 ORTHO05D004424 2.5e-66 255.4 132 89.4
arahy.Tifrunner.gnm1.ann1.8L38IN Arachis hypogaea HOM05D003770 ORTHO05D004424 2.5e-66 255.4 132 89.4
DCAR_004263 Daucus carota HOM05D003770 ORTHO05D004424 2.5e-66 255.4 133 91.7
MD00G1068500 Malus domestica HOM05D003770 ORTHO05D004424 3.2e-66 255.0 129 92.2
SGA_v2.0_scaffold111G31382 Striga asiatica HOM05D003770 ORTHO05D004424 3.2e-66 255.0 132 90.2
CAN.G773.20 Capsicum annuum HOM05D003770 ORTHO05D004424 5.5e-66 254.2 133 89.5
HanXRQChr03g0082041 Helianthus annuus HOM05D003770 ORTHO05D004424 5.5e-66 254.2 133 88.0
Os02g0698000 Oryza sativa ssp. japonica HOM05D003770 ORTHO05D004424 5.5e-66 254.2 133 88.7
FvH4_5g23520 Fragaria vesca HOM05D003770 ORTHO05D004424 7.1e-66 253.8 129 91.5
FAN18G3344 Fragaria x ananassa HOM05D003770 ORTHO05D004424 7.1e-66 253.8 129 91.5
Glyma.01G010200 Glycine max HOM05D003770 ORTHO05D004424 7.1e-66 253.8 128 91.4
Lj2g0001675 Lotus japonicus HOM05D003770 ORTHO05D004424 7.1e-66 253.8 132 88.6
Manes.15G185100 Manihot esculenta HOM05D003770 ORTHO05D004424 7.1e-66 253.8 129 91.5
TWI60G0039 Tripterygium wilfordii HOM05D003770 ORTHO05D004424 1.2e-65 253.1 129 90.7
CiPaw.12G070000 Carya illinoinensis HOM05D003770 ORTHO05D004424 1.6e-65 252.7 133 88.7
CsaV3_3G030440 Cucumis sativus L. HOM05D003770 ORTHO05D004424 1.6e-65 252.7 133 87.2
FAN13G3207 Fragaria x ananassa HOM05D003770 ORTHO05D004424 1.6e-65 252.7 129 91.5
Glyma.09G210900 Glycine max HOM05D003770 ORTHO05D004424 1.6e-65 252.7 128 90.6
Solyc08g076220.3 Solanum lycopersicum HOM05D003770 ORTHO05D004424 1.6e-65 252.7 133 88.7
Sopen08g024860 Solanum pennellii HOM05D003770 ORTHO05D004424 1.6e-65 252.7 133 88.7
PGSC0003DMG400009317 Solanum tuberosum HOM05D003770 ORTHO05D004424 1.6e-65 252.7 133 88.7
Hund14389 Selenicereus undatus HOM05D003770 ORTHO05D004424 2.1e-65 252.3 132 86.4
FAN18G4499 Fragaria x ananassa HOM05D003770 ORTHO05D004424 2.7e-65 251.9 129 90.7
Sabra01G0103600 Salix brachista HOM05D003770 ORTHO05D004424 2.7e-65 251.9 133 87.2
Zm00001eb251520 Zea mays HOM05D003770 ORTHO05D004424 2.7e-65 251.9 133 87.2
ClCG07G002220 Citrullus lanatus HOM05D003770 ORTHO05D004424 3.5e-65 251.5 133 86.5
Lsat_1_v5_gn_6_73360 Lactuca sativa HOM05D003770 ORTHO05D004424 4.6e-65 251.1 133 86.5
Sc07g0008420 Simmondsia chinensis HOM05D003770 ORTHO05D004424 4.6e-65 251.1 133 86.5
TPR.G9091 Trifolium pratense HOM05D003770 ORTHO05D004424 4.6e-65 251.1 132 87.9
Nitab4.5_0000543g0160 Nicotiana tabacum HOM05D003770 ORTHO05D004424 6.0e-65 250.8 133 87.2
Psat2g140680 Pisum sativum HOM05D003770 ORTHO05D004424 6.0e-65 250.8 132 87.9
Nitab4.5_0003152g0030 Nicotiana tabacum HOM05D003770 ORTHO05D004424 1.0e-64 250.0 129 89.1
Zm00001eb188120 Zea mays HOM05D003770 ORTHO05D004424 1.0e-64 250.0 133 87.2
Actinidia24585 Actinidia chinensis HOM05D003770 ORTHO05D004424 1.3e-64 249.6 132 87.9
CDE06G1725 Ceratophyllum demersum HOM05D003770 ORTHO05D004424 3.0e-64 248.4 133 85.7
CDE02G1660 Ceratophyllum demersum HOM05D003770 ORTHO05D004424 3.9e-64 248.1 133 83.5
unitig_32.g10970 Utricularia gibba HOM05D003770 ORTHO05D004424 3.9e-64 248.1 134 87.3
CDE03G0017 Ceratophyllum demersum HOM05D003770 ORTHO05D004424 5.1e-64 247.7 133 85.0
AUR62018610 Chenopodium quinoa HOM05D003770 ORTHO05D004424 6.7e-64 247.3 132 84.1
AUR62007378 Chenopodium quinoa HOM05D003770 ORTHO05D004424 8.7e-64 246.9 132 84.1
Lalb_Chr16g0380901 Lupinus albus HOM05D003770 ORTHO05D004424 1.1e-63 246.5 132 85.6
Medtr5g027530 Medicago truncatula HOM05D003770 ORTHO05D004424 1.1e-63 246.5 132 86.4
Phvul.002G133100 Phaseolus vulgaris HOM05D003770 ORTHO05D004424 1.1e-63 246.5 128 88.3
SEGI_11015 Sequoiadendron giganteum HOM05D003770 ORTHO05D004424 1.5e-63 246.1 133 87.2
unitig_748.g8135 Utricularia gibba HOM05D003770 ORTHO05D004424 1.5e-63 246.1 125 89.6
vmacro22044 Vaccinium macrocarpon HOM05D003770 ORTHO05D004424 1.5e-63 246.1 154 78.6
VMungo1215G0689 Vigna mungo HOM05D003770 ORTHO05D004424 1.5e-63 246.1 128 86.7
Lalb_Chr05g0215611 Lupinus albus HOM05D003770 ORTHO05D004424 1.9e-63 245.7 132 84.8
Mapoly0012s0175 Marchantia polymorpha HOM05D003770 ORTHO05D004424 3.3e-63 245.0 133 85.7
Cc08_g03960 Coffea canephora HOM05D003770 ORTHO05D004424 5.7e-63 244.2 132 87.9
Sed0013554 Sechium edule HOM05D003770 ORTHO05D004424 1.3e-62 243.0 129 85.3
EL10Ac5g11979 Beta vulgaris HOM05D003770 ORTHO05D004424 2.2e-62 242.3 132 84.1
AagrBONN_evm.TU.Sc2ySwM_117.3106 Anthoceros agrestis HOM05D003770 ORTHO05D004424 6.3e-62 240.7 125 87.2
Pp3c18_7120 Physcomitrium patens HOM05D003770 ORTHO05D004424 6.3e-62 240.7 134 83.6
Os04g0596900 Oryza sativa ssp. japonica HOM05D003770 ORTHO05D004424 8.2e-62 240.4 126 85.7
Sed0022644 Sechium edule HOM05D003770 ORTHO05D004424 8.2e-62 240.4 125 87.2
Pp3c21_14450 Physcomitrium patens HOM05D003770 ORTHO05D004424 1.1e-61 240.0 134 83.6
SMO298G0021 Selaginella moellendorffii HOM05D003770 ORTHO05D004424 1.1e-61 240.0 132 84.8
THA.LOC104812730 Tarenaya hassleriana HOM05D003770 ORTHO05D004424 1.8e-61 239.2 128 82.0
Pp3c19_14070 Physcomitrium patens HOM05D003770 ORTHO05D004424 5.3e-61 237.7 134 82.1
ClCG10G001180 Citrullus lanatus HOM05D003770 ORTHO05D004424 2.9e-59 231.9 122 84.4
TAR697G0002 Trochodendron aralioides HOM05D003770 ORTHO05D004424 8.5e-59 230.3 131 77.9
CBR_g39737 Chara braunii HOM05D003770 ORTHO05D004424 1.9e-58 229.2 122 82.0
Zm00001eb072030 Zea mays HOM05D003770 ORTHO05D004424 7.2e-58 227.3 122 82.8
TAR622G0569 Trochodendron aralioides HOM05D003770 ORTHO05D004424 9.4e-58 226.9 131 77.1
CsaV3_3G001220 Cucumis sativus L. HOM05D003770 ORTHO05D004424 1.6e-57 226.1 133 75.9
CDE11G0445 Ceratophyllum demersum HOM05D003770 ORTHO05D004424 2.7e-57 225.3 130 80.8
PRCOL_00002010 Prasinoderma coloniale HOM05D003770 ORTHO05D004424 2.5e-55 218.8 117 82.9
MELO3C013811.2 Cucumis melo HOM05D003770 ORTHO05D004424 4.3e-55 218.0 138 73.2
Cre12.g554800 Chlamydomonas reinhardtii HOM05D003770 ORTHO05D004424 5.7e-55 217.6 119 80.7
MCO14G400 Micromonas commoda HOM05D003770 ORTHO05D004424 6.3e-54 214.2 118 81.4
GSVIVG01024410001 Vitis vinifera HOM05D003770 ORTHO05D004424 6.9e-53 210.7 122 76.2
SEGI_13950 Sequoiadendron giganteum HOM05D003770 ORTHO05D004424 4.7e-49 198.0 101 88.1
SGA_v2.0_scaffold144G35863 Striga asiatica HOM05D003770 ORTHO05D004424 5.1e-48 194.5 131 74.0
Dinv06903 Davidia involucrata HOM05D003770 ORTHO05D004424 3.3e-47 191.8 90 96.7
HPP92_020819 Vanilla planifolia HOM05D003770 ORTHO05D004424 8.2e-38 160.6 82 86.6
FAN08G1257 Fragaria x ananassa HOM05D003770 ORTHO05D004424 4.1e-37 158.3 95 83.2
Peaxi162Scf00879g00019 Petunia axillaris HOM05D003770 ORTHO05D004424 9.1e-37 157.1 99 79.8
Nitab4.5_0001770g0170 Nicotiana tabacum HOM05D003770 ORTHO05D004424 1.3e-35 153.3 95 78.9
COL.COLO4_16898 Corchorus olitorius HOM05D003770 ORTHO05D004424 4.0e-32 141.7 73 94.5
TAR629G0526 Trochodendron aralioides HOM05D003770 ORTHO05D004424 3.4e-23 112.1 54 88.9
Nitab4.5_0012388g0010 Nicotiana tabacum HOM05D000083 ORTHO05D000196 3.1e-21 105.5 52 94.2
MELO3C026722.2 Cucumis melo HOM05D003770 ORTHO05D004424 7.0e-21 104.4 51 82.4
SEGI_16838 Sequoiadendron giganteum HOM05D003770 ORTHO05D004424 5.2e-16 88.2 48 70.8


User provided reference genes

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