Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 1.3e-99 366.3 180 100.0
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 3.8e-70 268.5 153 81.7
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 5.0e-70 268.1 153 83.0
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 8.5e-70 267.3 153 82.4
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 1.1e-69 266.9 153 82.4
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 1.4e-69 266.5 156 81.4
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 5.5e-69 264.6 156 80.1
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 7.2e-69 264.2 153 81.0
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 9.3e-69 263.8 153 82.4
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 1.6e-68 263.1 153 79.7
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 2.7e-68 262.3 153 79.7
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 3.6e-68 261.9 153 79.7
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 3.6e-68 261.9 153 80.4
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 6.1e-68 261.2 153 77.8
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 7.9e-68 260.8 153 79.1
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 7.9e-68 260.8 153 78.4
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 1.0e-67 260.4 153 79.7
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 1.3e-67 260.0 153 77.8
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 2.3e-67 259.2 153 79.1
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 2.3e-67 259.2 153 78.4
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 2.3e-67 259.2 153 79.1
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 2.3e-67 259.2 153 79.1
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 2.3e-67 259.2 156 78.2
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 3.0e-67 258.8 153 79.7
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 3.0e-67 258.8 153 79.7
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 3.0e-67 258.8 153 79.7
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 3.9e-67 258.5 153 78.4
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 3.9e-67 258.5 153 77.8
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 6.7e-67 257.7 153 77.1
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 6.7e-67 257.7 153 79.1
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 8.7e-67 257.3 153 76.5
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 8.7e-67 257.3 153 79.1
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 8.7e-67 257.3 153 77.8
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 1.5e-66 256.5 153 77.1
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 1.5e-66 256.5 139 84.2
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 1.5e-66 256.5 139 84.2
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 1.5e-66 256.5 153 77.8
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 1.5e-66 256.5 153 77.8
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 1.5e-66 256.5 154 78.6
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.5e-66 256.5 144 81.2
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 1.9e-66 256.1 153 77.8
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 1.9e-66 256.1 153 76.5
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 2.5e-66 255.8 153 76.5
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 2.5e-66 255.8 153 76.5
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 3.3e-66 255.4 153 78.4
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 3.3e-66 255.4 153 77.1
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 5.7e-66 254.6 153 75.8
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 5.7e-66 254.6 153 75.8
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 5.7e-66 254.6 153 75.8
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 5.7e-66 254.6 153 77.1
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 9.7e-66 253.8 153 75.8
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 9.7e-66 253.8 153 75.8
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 9.7e-66 253.8 153 77.1
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 1.6e-65 253.1 154 77.9
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 1.6e-65 253.1 153 76.5
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 2.2e-65 252.7 153 77.1
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 2.8e-65 252.3 153 74.5
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 3.7e-65 251.9 142 80.3
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 4.8e-65 251.5 153 75.2
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 4.8e-65 251.5 172 73.3
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 6.3e-65 251.1 144 79.9
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 8.2e-65 250.8 153 75.2
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 8.2e-65 250.8 153 75.8
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.4e-64 250.0 153 75.8
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 2.4e-64 249.2 153 74.5
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 2.4e-64 249.2 153 76.5
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 6.9e-64 247.7 144 77.1
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 9.1e-64 247.3 139 79.9
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 1.5e-63 246.5 145 79.3
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 1.5e-63 246.5 154 75.3
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 3.4e-63 245.4 153 73.9
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 4.5e-63 245.0 153 75.8
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 2.2e-62 242.7 153 75.2
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 2.9e-62 242.3 160 70.6
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 6.5e-62 241.1 140 78.6
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 3.6e-60 235.3 132 85.6
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 4.6e-60 235.0 153 69.9
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 4.6e-60 235.0 156 71.8
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 2.3e-59 232.6 176 63.1
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 5.1e-59 231.5 170 67.6
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 6.7e-59 231.1 126 81.0
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 1.5e-58 229.9 141 73.8
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 2.2e-57 226.1 140 75.7
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 6.3e-57 224.6 132 78.8
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 8.2e-57 224.2 133 79.7
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.1e-56 223.8 141 74.5
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 6.9e-56 221.1 133 77.4
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 5.9e-55 218.0 141 68.8
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 1.0e-54 217.2 134 74.6
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 2.9e-54 215.7 114 84.2
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 8.5e-54 214.2 133 74.4
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 3.2e-53 212.2 135 71.9
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 5.5e-53 211.5 140 70.0
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 7.2e-53 211.1 145 72.4
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 1.2e-52 210.3 133 71.4
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 3.9e-51 205.3 138 69.6
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 3.9e-51 205.3 120 78.3
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 8.8e-51 204.1 143 69.9
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 2.6e-50 202.6 141 61.0
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 4.4e-50 201.8 141 64.5
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 1.3e-49 200.3 117 75.2
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 2.6e-47 192.6 147 59.9
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 6.5e-46 188.0 116 72.4
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 2.3e-43 179.5 154 63.0
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 2.6e-42 176.0 150 53.3
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 3.1e-40 169.1 93 79.6
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 3.2e-37 159.1 96 76.0
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 4.0e-35 152.1 111 64.0
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 5.0e-30 135.2 122 57.4
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 5.0e-30 135.2 122 57.4
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 6.5e-30 134.8 149 41.6
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 7.2e-29 131.3 80 73.8
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 1.2e-28 130.6 154 50.0
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 8.8e-27 124.4 152 41.4
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 1.2e-23 114.0 99 58.6
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 1.2e-23 114.0 71 67.6
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 1.6e-23 113.6 65 84.6
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 2.8e-20 102.8 100 56.0
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 1.5e-18 97.1 88 59.1
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 6.4e-17 91.7 64 64.1
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 4.1e-16 89.0 50 82.0
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 4.6e-15 85.5 46 82.6
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 2.7e-07 59.7 57 52.6
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 3.5e-07 59.3 38 71.1


User provided reference genes

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