Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 4.5e-261 904.0 451 100.0
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 1.3e-204 716.5 454 80.0
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 4.9e-199 698.0 454 76.9
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 4.7e-194 681.4 394 84.8
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 2.0e-189 666.0 426 75.1
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 9.5e-187 657.1 457 73.3
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 6.2e-186 654.4 457 70.5
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.3e-185 652.5 451 70.3
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 6.8e-185 651.0 423 73.0
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 6.8e-185 651.0 423 73.0
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 8.3e-183 644.0 459 72.5
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 3.5e-181 638.6 485 69.1
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 7.8e-181 637.5 470 67.2
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 2.3e-180 636.0 463 68.5
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 1.5e-179 633.3 445 69.7
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 5.6e-179 631.3 393 79.4
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 5.6e-179 631.3 407 73.7
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 8.1e-178 627.5 461 71.1
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 8.9e-177 624.0 457 68.1
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 2.6e-176 622.5 457 68.7
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 5.8e-176 621.3 440 70.9
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 1.3e-175 620.2 458 70.3
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 4.9e-175 618.2 466 68.5
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 1.9e-174 616.3 459 66.9
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 3.5e-173 612.1 411 73.2
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 4.6e-173 611.7 439 70.2
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 2.3e-172 609.4 439 70.2
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 8.6e-172 607.4 438 66.7
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 5.6e-171 604.7 333 86.5
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.6e-170 603.2 468 65.2
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 3.1e-169 599.0 477 63.3
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 5.2e-169 598.2 448 66.7
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 5.2e-169 598.2 407 73.2
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 5.2e-169 598.2 396 73.2
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 8.9e-169 597.4 397 72.8
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 2.0e-168 596.3 456 66.2
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 2.6e-168 595.9 398 71.1
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 4.4e-168 595.1 487 63.7
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 1.7e-167 593.2 457 66.1
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.7e-167 593.2 394 72.8
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.2e-167 592.8 394 72.8
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 3.8e-167 592.0 392 73.2
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 3.8e-167 592.0 434 67.7
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 8.4e-167 590.9 452 65.7
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 1.1e-166 590.5 476 66.2
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 1.4e-166 590.1 592 57.1
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 1.9e-166 589.7 405 69.4
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 2.4e-166 589.3 406 70.7
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 4.1e-166 588.6 463 64.4
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 7.1e-166 587.8 452 66.4
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.0e-164 583.9 408 69.9
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.7e-164 583.2 453 66.4
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 5.1e-164 581.6 367 76.0
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 1.5e-163 580.1 483 64.4
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 7.3e-163 577.8 450 64.0
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 1.4e-161 573.5 366 74.0
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 6.9e-161 571.2 448 64.3
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 9.0e-161 570.9 446 65.7
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 2.6e-160 569.3 406 66.7
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 3.4e-160 568.9 503 60.2
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 3.4e-160 568.9 450 64.4
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 9.9e-160 567.4 400 67.8
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 9.9e-160 567.4 400 67.2
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 2.9e-159 565.8 421 65.3
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 2.9e-159 565.8 454 64.5
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 2.9e-159 565.8 421 66.7
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 3.8e-159 565.5 400 67.0
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 4.9e-159 565.1 442 62.4
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 6.4e-159 564.7 447 62.0
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 8.4e-159 564.3 405 67.2
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 1.9e-158 563.1 406 66.7
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 3.2e-158 562.4 398 67.8
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 4.2e-158 562.0 398 68.1
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 4.2e-158 562.0 398 68.1
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 4.2e-158 562.0 458 63.3
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 7.1e-158 561.2 451 61.0
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 7.1e-158 561.2 397 67.0
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 7.1e-158 561.2 397 67.0
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 7.1e-158 561.2 386 69.2
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 1.2e-157 560.5 473 61.1
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 2.1e-157 559.7 388 69.8
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 2.1e-157 559.7 451 63.9
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 3.5e-157 558.9 409 65.8
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 4.6e-157 558.5 404 66.1
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 4.6e-157 558.5 446 63.0
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 4.6e-157 558.5 329 79.9
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 6.0e-157 558.1 389 69.2
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 1.7e-156 556.6 549 55.6
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 3.9e-156 555.4 383 70.2
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 2.5e-155 552.7 411 68.6
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 4.3e-155 552.0 436 61.7
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 5.6e-155 551.6 448 60.7
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 2.8e-154 549.3 435 61.6
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 2.4e-153 546.2 417 64.5
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 4.0e-153 545.4 436 61.0
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 4.0e-153 545.4 436 61.0
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 2.0e-152 543.1 356 73.6
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 2.6e-152 542.7 444 64.9
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 1.3e-151 540.4 427 63.7
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 2.4e-150 536.2 380 66.8
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 4.2e-150 535.4 333 76.6
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 3.9e-148 528.9 357 70.0
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 8.7e-148 527.7 362 69.9
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 3.3e-147 525.8 427 61.1
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 9.0e-145 517.7 405 63.7
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 1.2e-144 517.3 373 68.4
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 4.5e-144 515.4 418 61.2
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 9.9e-144 514.2 352 69.6
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 1.1e-142 510.8 470 60.4
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 2.4e-142 509.6 381 64.6
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.7e-141 506.1 408 62.7
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 1.8e-140 503.4 431 60.6
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 3.0e-140 502.7 398 63.1
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 8.7e-140 501.1 411 62.3
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 4.3e-139 498.8 344 70.1
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 4.8e-138 495.4 344 69.8
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 8.2e-138 494.6 383 63.2
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 8.2e-138 494.6 383 63.2
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 3.1e-137 492.7 330 77.0
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.2e-133 480.7 293 76.5
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 3.4e-128 462.6 417 55.4
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 1.6e-125 453.8 387 55.0
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 1.1e-123 447.6 361 62.3
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 1.5e-123 447.2 398 59.5
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 7.7e-120 434.9 353 57.5
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 1.0e-119 434.5 366 52.7
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 5.1e-116 422.2 382 55.5
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 3.1e-113 412.9 412 51.2
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 4.5e-112 409.1 255 78.4
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 5.0e-111 405.6 248 75.4
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 7.2e-110 401.7 220 84.5
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 1.5e-107 394.0 380 51.6
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 4.4e-107 392.5 253 71.5
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 2.0e-96 357.1 206 82.5
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 2.4e-89 333.6 281 64.1
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 8.6e-79 298.5 384 40.9
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 1.1e-62 245.0 281 44.1
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 8.9e-60 235.3 337 40.1
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 1.6e-53 214.5 176 61.9
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 3.9e-39 166.8 196 52.0
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.9e-38 164.5 93 80.6
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 2.6e-35 154.1 83 83.1
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 2.5e-25 120.9 77 74.0
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 1.1e-22 112.1 100 59.0
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 3.3e-22 110.5 62 82.3
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 3.7e-21 107.1 108 51.9
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 7.6e-19 99.4 93 52.7
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 8.4e-18 95.9 55 80.0
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 8.4e-18 95.9 55 80.0
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 8.4e-18 95.9 55 80.0
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.5e-17 94.4 55 78.2
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 1.2e-16 92.0 54 77.8
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 1.8e-15 88.2 54 72.2
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 2.5e-14 84.3 73 58.9
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 1.4e-09 68.6 32 90.6
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 1.0e-07 62.4 59 54.2
Gohir.D02G161780 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.4e-07 62.0 35 80.0
Gohir.D10G176966 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.4e-07 62.0 35 80.0
Gorai.011G197900 Gossypium raimondii HOM05D004519 ORTHO05D017048 4.3e-06 57.0 35 74.3


User provided reference genes

Program Settings