Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 1.3e-120 436.8 301 100.0
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 1.2e-79 300.8 221 75.6
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 2.4e-61 240.0 222 61.7
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.9e-58 230.3 222 60.8
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 3.9e-51 206.1 220 58.2
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.5e-50 204.1 224 57.6
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 3.3e-50 203.0 225 56.4
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 8.1e-49 198.4 222 58.1
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.0e-47 193.7 225 56.9
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 2.9e-46 189.9 221 55.7
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 3.2e-45 186.4 221 52.0
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 3.2e-45 186.4 220 54.5
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 4.1e-45 186.0 222 55.0
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 9.2e-45 184.9 220 55.0
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 1.6e-44 184.1 226 52.2
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 2.7e-44 183.3 221 51.1
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 3.5e-44 183.0 226 53.1
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 3.9e-43 179.5 226 52.2
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 5.6e-42 175.6 221 51.1
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 9.5e-42 174.9 225 51.6
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 1.2e-41 174.5 212 48.1
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.1e-40 169.9 221 49.3
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 8.9e-40 168.3 221 53.8
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 1.5e-39 167.5 225 52.0
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 3.4e-39 166.4 223 50.2
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 5.8e-39 165.6 222 50.9
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 1.3e-38 164.5 229 48.5
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 4.9e-38 162.5 227 49.3
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 8.4e-38 161.8 222 47.3
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 2.4e-37 160.2 216 50.0
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 2.4e-37 160.2 222 47.3
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 9.2e-37 158.3 222 45.9
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 3.5e-36 156.4 221 48.4
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 6.0e-36 155.6 226 45.1
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 3.0e-35 153.3 219 50.7
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 3.9e-35 152.9 222 47.7
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 3.9e-35 152.9 221 44.8
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 6.6e-35 152.1 221 48.0
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 6.6e-35 152.1 224 46.4
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 8.7e-35 151.8 215 46.0
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.5e-34 151.0 221 44.8
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 2.8e-33 146.7 229 47.6
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 2.8e-33 146.7 221 46.6
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 2.8e-33 146.7 221 46.2
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.8e-32 144.1 223 45.7
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 5.3e-32 142.5 223 46.2
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 2.0e-31 140.6 222 45.5
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 2.2e-30 137.1 221 48.4
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.9e-29 134.0 216 44.4
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 4.2e-29 132.9 222 43.7
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 9.3e-29 131.7 228 42.5
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.2e-28 131.3 220 45.0
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 1.6e-28 131.0 221 43.4
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 1.6e-28 131.0 221 43.4
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 2.1e-28 130.6 222 44.1
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 2.1e-28 130.6 225 43.1
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 6.6e-27 125.6 220 41.8
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 8.7e-27 125.2 223 42.6
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 2.5e-26 123.6 221 42.1
Peaxi162Scf00184g00001 Petunia axillaris HOM05D006310 ORTHO05D007768 7.3e-26 122.1 230 41.3
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 9.6e-26 121.7 221 40.7
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 9.6e-26 121.7 216 40.3
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 1.6e-25 120.9 221 38.5
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 2.1e-25 120.6 225 39.6
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 4.8e-25 119.4 225 40.9
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 4.8e-25 119.4 229 39.7
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 6.9e-24 115.5 222 40.5
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 9.0e-24 115.2 222 38.7
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.2e-23 114.8 227 38.3
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 2.6e-23 113.6 224 38.4
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 2.6e-23 113.6 221 41.6
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 2.6e-23 113.6 221 39.8
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 3.4e-23 113.2 223 39.0
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 5.8e-23 112.5 221 38.9
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 7.6e-23 112.1 222 38.7
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 7.6e-23 112.1 91 63.7
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 1.3e-22 111.3 222 38.7
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 1.7e-22 110.9 221 40.3
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 2.2e-22 110.5 233 39.9
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 3.8e-22 109.8 229 38.4
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 4.9e-22 109.4 221 40.3
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 6.4e-22 109.0 234 40.6
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 1.9e-21 107.5 225 38.2
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 3.2e-21 106.7 221 38.9
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 5.4e-21 105.9 223 36.8
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 9.3e-21 105.1 219 38.4
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 2.7e-20 103.6 216 38.9
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 7.9e-20 102.1 219 37.9
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 1.0e-19 101.7 219 37.9
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.0e-19 101.7 219 37.9
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 1.8e-19 100.9 221 38.0
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 6.7e-19 99.0 228 38.2
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 1.5e-18 97.8 222 37.4
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 2.5e-18 97.1 222 37.4
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 7.4e-18 95.5 225 36.9
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 1.3e-17 94.7 226 38.1
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 2.1e-17 94.0 228 36.8
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 2.1e-17 94.0 224 37.1
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 4.8e-17 92.8 216 36.1
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 1.1e-16 91.7 224 38.4
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 3.1e-16 90.1 219 34.7
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 5.3e-16 89.4 219 36.5
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 1.4e-13 81.3 218 34.9
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 3.2e-13 80.1 84 51.2
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 4.2e-13 79.7 84 51.2
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 9.3e-13 78.6 222 34.2
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 1.2e-12 78.2 224 33.0
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 4.6e-12 76.3 218 33.9
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 4.6e-12 76.3 225 32.9
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 1.8e-11 74.3 220 33.2
ATR1120G200 Amborella trichopoda HOM05D001903 ORTHO05D001847 3.0e-11 73.6 230 31.3
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 3.7e-09 66.6 102 46.1
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 4.8e-09 66.2 224 30.4
Aqoxy7G02202 Aquilegia oxysepala HOM05D001903 ORTHO05D001847 4.8e-09 66.2 227 29.1
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 4.8e-09 66.2 52 61.5
Sp6g24210 Schrenkiella parvula HOM05D001903 ORTHO05D001847 4.8e-09 66.2 226 28.8
Thhalv10014275m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 1.1e-08 65.1 223 30.0
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 1.4e-08 64.7 55 58.2
Potri.018G130100 Populus trichocarpa HOM05D001903 ORTHO05D001847 2.4e-08 63.9 233 31.8
Sabra18G0110600 Salix brachista HOM05D001903 ORTHO05D001847 3.1e-08 63.5 221 30.3
Ca_21670_v3 Cicer arietinum L. HOM05D001903 ORTHO05D001847 4.0e-08 63.2 226 30.1
Mapoly0003s0253 Marchantia polymorpha HOM05D036240 ORTHO05D031199 9.0e-08 62.0 97 40.2
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.5e-07 61.2 70 52.9
QL02p088755 Quercus lobata HOM05D001903 ORTHO05D001847 2.6e-07 60.5 223 30.5
Lsat_1_v5_gn_7_107661 Lactuca sativa HOM05D001903 ORTHO05D001847 4.5e-07 59.7 218 31.2
unitig_699.g19788 Utricularia gibba HOM05D006310 ORTHO05D007768 4.5e-07 59.7 40 62.5
Lj3g0010604 Lotus japonicus HOM05D001903 ORTHO05D001847 5.8e-07 59.3 69 49.3
Ciclev10009202m.g Citrus clementina HOM05D001903 ORTHO05D001847 7.6e-07 58.9 74 44.6
Haze_16546 Corylus avellana HOM05D001903 ORTHO05D001847 1.0e-06 58.5 239 26.8
Sabra18G0110800 Salix brachista HOM05D001903 ORTHO05D001847 1.7e-06 57.8 246 29.7
SGA_v2.0_scaffold5G02688 Striga asiatica HOM05D001903 ORTHO05D001847 2.9e-06 57.0 169 33.1
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 3.8e-06 56.6 233 30.0
A10p19730 Brassica napus HOM05D001903 ORTHO05D001847 4.9e-06 56.2 219 29.7
PSO170G5882 Papaver somniferum HOM05D001903 ORTHO05D001847 4.9e-06 56.2 231 28.1
arahy.Tifrunner.gnm1.ann1.UKR13J Arachis hypogaea HOM05D001903 ORTHO05D001847 8.4e-06 55.5 130 33.8
CARHR192630 Cardamine hirsuta HOM05D001903 ORTHO05D001847 8.4e-06 55.5 227 30.0
Migut.D01072 Erythranthe guttata HOM05D001903 ORTHO05D001847 8.4e-06 55.5 78 47.4


User provided reference genes

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