Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 1.6e-82 309.3 153 100.0
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 1.4e-70 269.6 153 88.2
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 2.8e-58 228.8 153 74.5
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.7e-55 219.5 153 71.2
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.1e-54 216.9 155 70.3
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.1e-54 216.9 155 70.3
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 9.4e-54 213.8 157 65.0
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.1e-53 212.6 155 68.4
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 2.3e-52 209.1 165 63.0
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 2.0e-51 206.1 171 62.6
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 2.6e-51 205.7 159 62.9
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 1.3e-50 203.4 163 65.6
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.7e-50 203.0 158 63.9
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 2.8e-50 202.2 164 64.0
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.7e-50 201.8 156 67.3
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 4.8e-50 201.4 165 62.4
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 4.8e-50 201.4 157 63.1
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 1.8e-49 199.5 163 62.6
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 1.8e-49 199.5 157 66.9
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 5.4e-49 198.0 154 64.9
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 5.9e-48 194.5 164 59.1
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 1.3e-47 193.4 152 65.1
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 1.7e-47 193.0 158 62.7
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 1.7e-47 193.0 154 66.9
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 2.9e-47 192.2 159 58.5
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 8.5e-47 190.7 159 57.9
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.9e-46 189.5 155 60.0
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 2.5e-46 189.1 159 57.9
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 7.2e-46 187.6 157 61.8
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 1.2e-45 186.8 197 51.3
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 1.6e-45 186.4 153 60.8
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 2.7e-45 185.7 155 62.6
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 3.6e-45 185.3 155 61.9
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 6.1e-45 184.5 158 60.1
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 1.0e-44 183.7 157 56.1
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 1.8e-44 183.0 161 57.8
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 1.8e-44 183.0 162 59.9
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.0e-44 182.2 156 58.3
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 5.2e-44 181.4 157 56.1
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 8.8e-44 180.6 163 57.7
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 2.0e-43 179.5 144 64.6
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 2.6e-43 179.1 163 52.8
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 4.4e-43 178.3 157 54.8
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 9.8e-43 177.2 156 57.1
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 1.7e-42 176.4 163 52.1
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 2.8e-42 175.6 165 56.4
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 2.8e-42 175.6 153 57.5
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 4.9e-42 174.9 156 55.1
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 8.3e-42 174.1 154 57.1
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 8.3e-42 174.1 163 50.9
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 1.1e-41 173.7 157 60.5
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.4e-41 173.3 154 57.8
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 9.2e-41 170.6 164 56.1
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 1.6e-40 169.9 156 52.6
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 2.0e-40 169.5 168 52.4
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 2.7e-40 169.1 153 55.6
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 3.5e-40 168.7 161 54.7
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 4.5e-40 168.3 153 54.9
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 4.5e-40 168.3 164 53.0
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 5.9e-40 167.9 159 56.0
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 2.9e-39 165.6 163 52.8
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.8e-39 165.2 159 56.0
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 5.0e-39 164.9 161 54.0
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 5.0e-39 164.9 163 51.5
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.1e-38 163.7 155 52.9
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.9e-38 162.9 163 50.9
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 2.5e-38 162.5 153 53.6
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 2.5e-38 162.5 153 53.6
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.3e-38 162.2 158 55.1
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 4.3e-38 161.8 166 54.8
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 4.3e-38 161.8 244 40.6
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 5.6e-38 161.4 267 39.3
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 7.3e-38 161.0 159 50.3
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 9.5e-38 160.6 158 55.1
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 1.2e-37 160.2 156 51.3
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 1.6e-37 159.8 159 50.9
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 1.6e-37 159.8 159 50.9
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 2.1e-37 159.5 158 55.1
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 2.8e-37 159.1 153 52.3
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 3.6e-37 158.7 156 50.6
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 3.6e-37 158.7 174 52.3
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 4.7e-37 158.3 159 53.5
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 4.7e-37 158.3 193 47.2
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 6.1e-37 157.9 156 50.6
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 2.3e-36 156.0 153 53.6
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 4.0e-36 155.2 155 54.2
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 1.2e-35 153.7 159 49.1
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 1.2e-35 153.7 194 45.9
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.5e-35 153.3 152 50.7
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 2.0e-35 152.9 167 52.1
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 2.0e-35 152.9 156 49.4
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 2.0e-35 152.9 223 41.7
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 9.8e-35 150.6 156 48.7
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.3e-34 150.2 153 50.3
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 1.3e-34 150.2 158 47.5
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 1.7e-34 149.8 162 47.5
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 2.9e-34 149.1 221 43.0
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 6.4e-34 147.9 167 50.3
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 6.4e-34 147.9 167 47.3
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 1.1e-33 147.1 161 48.4
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 1.1e-33 147.1 200 44.0
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 1.4e-33 146.7 162 50.0
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 1.8e-33 146.4 164 48.8
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 4.1e-33 145.2 157 49.7
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 7.0e-33 144.4 171 46.2
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 1.6e-32 143.3 158 50.0
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 3.5e-32 142.1 148 52.7
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 1.3e-31 140.2 143 55.2
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 8.6e-31 137.5 167 49.1
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 1.9e-30 136.3 149 49.0
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 3.3e-30 135.6 159 48.4
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 7.3e-30 134.4 156 51.9
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 9.5e-30 134.0 111 58.6
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 2.8e-29 132.5 158 48.1
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 1.4e-28 130.2 172 43.6
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 6.8e-28 127.9 81 70.4
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 8.9e-28 127.5 152 50.0
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 3.4e-27 125.6 150 52.0
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 3.7e-26 122.1 146 47.9
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 4.9e-26 121.7 162 43.2
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 8.3e-26 120.9 160 48.1
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 1.9e-25 119.8 156 46.2
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 2.4e-25 119.4 156 46.2
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 2.4e-25 119.4 157 46.5
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 3.2e-25 119.0 156 47.4
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 4.1e-25 118.6 153 47.1
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 4.1e-25 118.6 156 46.8
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 4.6e-24 115.2 155 44.5
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 4.6e-24 115.2 155 44.5
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 4.6e-24 115.2 79 64.6
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 6.0e-24 114.8 147 48.3
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 7.8e-24 114.4 157 45.2
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 2.3e-23 112.8 147 47.6
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 3.0e-23 112.5 119 52.1
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 6.6e-23 111.3 150 46.7
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 6.6e-23 111.3 170 41.8
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 8.6e-23 110.9 153 45.8
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 8.6e-23 110.9 153 45.8
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 8.6e-23 110.9 151 45.0
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 1.1e-22 110.5 153 45.1
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.6e-21 106.7 160 43.1
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 8.1e-21 104.4 152 42.8
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 2.3e-20 102.8 73 65.8
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 4.0e-20 102.1 81 55.6
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 6.8e-20 101.3 80 63.8
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 3.4e-19 99.0 152 41.4
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.4e-17 93.6 71 69.0
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 4.6e-16 88.6 81 60.5
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.7e-15 86.7 77 50.6
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 5.1e-15 85.1 81 48.1
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 1.1e-14 84.0 88 51.1
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 8.9e-12 74.3 44 68.2
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 4.4e-11 72.0 123 37.4
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 9.9e-11 70.9 60 56.7
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.3e-10 70.5 77 45.5
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 2.2e-10 69.7 100 41.0
Actinidia03382 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.4e-09 66.2 43 72.1
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 1.6e-08 63.5 87 47.1
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 1.0e-07 60.8 88 44.3
Zm00001eb373750 Zea mays HOM05D009386 ORTHO05D011419 3.3e-06 55.8 34 70.6


User provided reference genes

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