Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28901 Davidia involucrata HOM05D001444 ORTHO05D004695 2.3e-117 425.6 219 100.0
Hma1.2p1_0414F.1_g147580 Hydrangea macrophylla HOM05D001444 ORTHO05D004695 3.3e-108 395.2 213 94.4
Actinidia31480 Actinidia chinensis HOM05D001444 ORTHO05D004695 7.5e-105 384.0 213 91.5
CSS0002145 Camellia sinensis var. sinensis HOM05D001444 ORTHO05D004695 2.9e-104 382.1 213 90.6
Dinv25171 Davidia involucrata HOM05D001444 ORTHO05D004695 3.7e-104 381.7 213 92.0
Lj2C249T19 Lonicera japonica HOM05D001444 ORTHO05D004695 4.9e-104 381.3 213 90.6
MD16G1267600 Malus domestica HOM05D001444 ORTHO05D004695 5.4e-103 377.9 213 87.8
Prupe.5G050100 Prunus persica HOM05D001444 ORTHO05D004695 9.2e-103 377.1 213 88.7
GSVIVG01013264001 Vitis vinifera HOM05D001444 ORTHO05D004695 2.7e-102 375.6 213 89.7
Atru.chr9.1137 Acer truncatum HOM05D001444 ORTHO05D004695 7.8e-102 374.0 213 88.7
MD06G1043200 Malus domestica HOM05D001444 ORTHO05D004695 1.0e-101 373.6 213 87.8
Cfa012363 Carpinus fangiana HOM05D001444 ORTHO05D004695 2.3e-101 372.5 214 88.8
Haze_08320 Corylus avellana HOM05D001444 ORTHO05D004695 2.3e-101 372.5 214 88.8
CANSAT21G1409 Cannabis sativa HOM05D001444 ORTHO05D004695 5.1e-101 371.3 213 86.9
Actinidia10873 Actinidia chinensis HOM05D001444 ORTHO05D004695 1.2e-99 366.7 213 87.8
RcHm_v2.0_Chr7g0207901 Rosa chinensis HOM05D001444 ORTHO05D004695 1.2e-99 366.7 213 87.8
CiPaw.12G058900 Carya illinoinensis HOM05D001444 ORTHO05D004695 2.8e-99 365.5 214 86.4
Cc08_g01590 Coffea canephora HOM05D001444 ORTHO05D004695 4.7e-99 364.8 213 86.4
Migut.E00806 Erythranthe guttata HOM05D001444 ORTHO05D004695 4.7e-99 364.8 214 87.9
Migut.E00903 Erythranthe guttata HOM05D001444 ORTHO05D004695 4.7e-99 364.8 214 87.9
FvH4_5g20910 Fragaria vesca HOM05D001444 ORTHO05D004695 4.7e-99 364.8 213 87.3
CiPaw.11G086000 Carya illinoinensis HOM05D001444 ORTHO05D004695 1.4e-98 363.2 214 87.4
Eucgr.E00326 Eucalyptus grandis HOM05D001444 ORTHO05D004695 5.2e-98 361.3 213 85.4
FAN13G2262 Fragaria x ananassa HOM05D001444 ORTHO05D004695 8.9e-98 360.5 213 85.9
TWI81G0864 Tripterygium wilfordii HOM05D001444 ORTHO05D004695 1.2e-97 360.1 213 84.0
PGR042G1923 Punica granatum HOM05D001444 ORTHO05D004695 1.5e-97 359.8 213 85.9
QL12p007705 Quercus lobata HOM05D001444 ORTHO05D004695 2.6e-97 359.0 214 86.4
DCAR_005596 Daucus carota HOM05D001444 ORTHO05D004695 7.6e-97 357.5 214 85.0
TWI60G0909 Tripterygium wilfordii HOM05D001444 ORTHO05D004695 1.7e-96 356.3 213 83.6
FAN18G1618 Fragaria x ananassa HOM05D001444 ORTHO05D004695 2.2e-96 355.9 225 82.7
ClCG10G001960 Citrullus lanatus HOM05D001444 ORTHO05D004695 4.9e-96 354.8 213 83.1
TAR629G1078 Trochodendron aralioides HOM05D001444 ORTHO05D004695 4.9e-96 354.8 213 84.0
Lsat_1_v5_gn_6_67340 Lactuca sativa HOM05D001444 ORTHO05D004695 6.4e-96 354.4 213 86.9
Nn1g00687 Nelumbo nucifera HOM05D001444 ORTHO05D004695 6.4e-96 354.4 213 85.0
Potri.003G086000 Populus trichocarpa HOM05D001444 ORTHO05D004695 1.4e-95 353.2 219 83.6
CAN.G572.56 Capsicum annuum HOM05D001444 ORTHO05D004695 1.9e-95 352.8 213 83.6
MELO3C013881.2 Cucumis melo HOM05D001444 ORTHO05D004695 1.9e-95 352.8 213 83.6
CsaV3_3G002090 Cucumis sativus L. HOM05D001444 ORTHO05D004695 1.9e-95 352.8 213 83.6
Sed0009636 Sechium edule HOM05D001444 ORTHO05D004695 1.9e-95 352.8 213 82.2
DCAR_008306 Daucus carota HOM05D001444 ORTHO05D004695 2.4e-95 352.4 214 82.7
FAN04G1081 Fragaria x ananassa HOM05D001444 ORTHO05D004695 2.4e-95 352.4 213 85.4
Ciclev10018797m.g Citrus clementina HOM05D001444 ORTHO05D004695 3.2e-95 352.1 214 86.0
Manes.17G020300 Manihot esculenta HOM05D001444 ORTHO05D004695 3.2e-95 352.1 215 84.7
Nitab4.5_0001444g0040 Nicotiana tabacum HOM05D001444 ORTHO05D004695 3.2e-95 352.1 213 84.0
Nitab4.5_0004832g0010 Nicotiana tabacum HOM05D001444 ORTHO05D004695 4.1e-95 351.7 213 84.0
arahy.Tifrunner.gnm1.ann1.5T8U7P Arachis hypogaea HOM05D001444 ORTHO05D004695 7.1e-95 350.9 213 83.6
arahy.Tifrunner.gnm1.ann1.SSR0B3 Arachis hypogaea HOM05D001444 ORTHO05D004695 7.1e-95 350.9 213 83.6
Gohir.D11G028200 Gossypium hirsutum HOM05D001444 ORTHO05D004695 9.2e-95 350.5 213 82.2
Duzib068G0281 Durio zibethinus HOM05D001444 ORTHO05D004695 3.5e-94 348.6 213 82.6
Aqoxy3G02582 Aquilegia oxysepala HOM05D001444 ORTHO05D004695 7.8e-94 347.4 220 83.6
ECA233G5155 Erigeron canadensis HOM05D001444 ORTHO05D004695 7.8e-94 347.4 213 84.0
Gohir.A08G161100 Gossypium hirsutum HOM05D001444 ORTHO05D004695 7.8e-94 347.4 213 82.6
AUR62007207 Chenopodium quinoa HOM05D001444 ORTHO05D004695 1.0e-93 347.1 213 81.2
Gohir.D08G181200 Gossypium hirsutum HOM05D001444 ORTHO05D004695 1.0e-93 347.1 213 82.2
Gorai.004G190200 Gossypium raimondii HOM05D001444 ORTHO05D004695 1.0e-93 347.1 213 82.2
Duzib205G1018 Durio zibethinus HOM05D001444 ORTHO05D004695 1.7e-93 346.3 213 82.2
SGA_v2.0_scaffold6G03172 Striga asiatica HOM05D001444 ORTHO05D004695 3.0e-93 345.5 221 84.2
HanXRQChr15g0475561 Helianthus annuus HOM05D001444 ORTHO05D004695 3.9e-93 345.1 213 82.2
Sc22g0001260 Simmondsia chinensis HOM05D001444 ORTHO05D004695 5.1e-93 344.7 213 81.7
FAN08G0132 Fragaria x ananassa HOM05D001444 ORTHO05D004695 6.6e-93 344.4 213 84.5
Gohir.A11G029700 Gossypium hirsutum HOM05D001444 ORTHO05D004695 6.6e-93 344.4 213 80.8
Sc22g0000160 Simmondsia chinensis HOM05D001444 ORTHO05D004695 6.6e-93 344.4 213 81.7
Thecc.03G236300 Theobroma cacao HOM05D001444 ORTHO05D004695 8.6e-93 344.0 213 81.2
Glyma.01G203100 Glycine max HOM05D001444 ORTHO05D004695 1.1e-92 343.6 214 82.7
Potri.001G148400 Populus trichocarpa HOM05D001444 ORTHO05D004695 1.5e-92 343.2 218 80.7
TAR374G0800 Trochodendron aralioides HOM05D001444 ORTHO05D004695 2.5e-92 342.4 217 81.1
Sabra03G0055900 Salix brachista HOM05D001444 ORTHO05D004695 4.3e-92 341.7 224 79.9
Solyc08g077440.3 Solanum lycopersicum HOM05D001444 ORTHO05D004695 1.2e-91 340.1 213 82.2
Sopen08g026030 Solanum pennellii HOM05D001444 ORTHO05D004695 1.2e-91 340.1 213 82.2
Gorai.007G030900 Gossypium raimondii HOM05D001444 ORTHO05D004695 1.6e-91 339.7 227 76.7
PGSC0003DMG400001842 Solanum tuberosum HOM05D001444 ORTHO05D004695 2.8e-91 339.0 213 81.7
MSTRG.1963 Avicennia marina HOM05D001444 ORTHO05D004695 3.6e-91 338.6 214 84.6
Phvul.003G227400 Phaseolus vulgaris HOM05D001444 ORTHO05D004695 3.6e-91 338.6 213 80.8
PSO782G3460 Papaver somniferum HOM05D001444 ORTHO05D004695 6.2e-91 337.8 213 82.2
arahy.Tifrunner.gnm1.ann1.TB6HA2 Arachis hypogaea HOM05D001444 ORTHO05D004695 1.1e-90 337.0 213 81.2
arahy.Tifrunner.gnm1.ann1.ZW7PV2 Arachis hypogaea HOM05D001444 ORTHO05D004695 1.1e-90 337.0 213 81.2
Phvul.002G002900 Phaseolus vulgaris HOM05D001444 ORTHO05D004695 1.1e-90 337.0 213 79.3
Lj2g0026955 Lotus japonicus HOM05D001444 ORTHO05D004695 1.8e-90 336.3 215 81.9
PSO063G4899 Papaver somniferum HOM05D001444 ORTHO05D004695 2.4e-90 335.9 213 81.7
VMungo0251G0931 Vigna mungo HOM05D001444 ORTHO05D004695 5.2e-90 334.7 213 79.8
Lalb_Chr05g0214121 Lupinus albus HOM05D001444 ORTHO05D004695 8.9e-90 334.0 213 81.2
Medtr4g099020 Medicago truncatula HOM05D001444 ORTHO05D004695 2.6e-89 332.4 213 78.9
Glyma.17G151100 Glycine max HOM05D001444 ORTHO05D004695 3.4e-89 332.0 213 79.8
Glyma.05G068600 Glycine max HOM05D001444 ORTHO05D004695 5.8e-89 331.3 213 81.2
Psat4g077480 Pisum sativum HOM05D001444 ORTHO05D004695 1.7e-88 329.7 213 78.9
Lj4g0002730 Lotus japonicus HOM05D001444 ORTHO05D004695 3.8e-88 328.6 215 79.5
CDE11G0316 Ceratophyllum demersum HOM05D001444 ORTHO05D004695 4.9e-88 328.2 213 77.9
Ca_22036_v3 Cicer arietinum L. HOM05D001444 ORTHO05D004695 4.9e-88 328.2 213 78.9
Hund11295 Selenicereus undatus HOM05D001444 ORTHO05D004695 1.1e-87 327.0 213 77.9
TPR.G19191 Trifolium pratense HOM05D001444 ORTHO05D004695 3.2e-87 325.5 213 78.4
Cpa.g.sc76.10 Carica papaya HOM05D001444 ORTHO05D004695 7.1e-87 324.3 197 83.2
Oeu053065.1 Olea europaea HOM05D001444 ORTHO05D004695 9.3e-87 323.9 259 69.9
Lsat_1_v5_gn_6_89400 Lactuca sativa HOM05D001444 ORTHO05D004695 7.8e-86 320.9 209 80.9
Peaxi162Scf00084g00410 Petunia axillaris HOM05D001444 ORTHO05D004695 1.0e-85 320.5 213 78.4
Sp2g11850 Schrenkiella parvula HOM05D001444 ORTHO05D004695 1.7e-85 319.7 213 77.0
Ca_24625_v3 Cicer arietinum L. HOM05D001444 ORTHO05D004695 3.0e-85 318.9 217 78.8
Thhalv10000767m.g Eutrema salsugineum HOM05D001444 ORTHO05D004695 3.9e-85 318.5 213 76.5
MBI04_g03359_MAGBIO Magnolia biondii HOM05D001444 ORTHO05D004695 5.1e-85 318.2 215 77.7
Psat2g174080 Pisum sativum HOM05D001444 ORTHO05D004695 5.1e-85 318.2 214 78.5
HanXRQChr03g0086981 Helianthus annuus HOM05D001444 ORTHO05D004695 6.6e-85 317.8 213 76.5
THA.LOC104806687 Tarenaya hassleriana HOM05D001444 ORTHO05D004695 8.7e-85 317.4 213 77.0
vmacro14110 Vaccinium macrocarpon HOM05D001444 ORTHO05D004695 8.7e-85 317.4 179 88.8
AL8G11230 Arabidopsis lyrata HOM05D001444 ORTHO05D004695 1.9e-84 316.2 213 76.1
Aa31LG9G5940 Aethionema arabicum HOM05D001444 ORTHO05D004695 2.5e-84 315.8 213 76.5
AT5G47040 Arabidopsis thaliana HOM05D001444 ORTHO05D004695 2.5e-84 315.8 213 76.1
BcaC06g31421 Brassica carinata HOM05D001444 ORTHO05D004695 3.3e-84 315.5 213 75.6
Medtr5g013790 Medicago truncatula HOM05D001444 ORTHO05D004695 4.3e-84 315.1 216 76.4
BcaC06g34292 Brassica carinata HOM05D001444 ORTHO05D004695 5.6e-84 314.7 213 75.6
A06p45340 Brassica napus HOM05D001444 ORTHO05D004695 5.6e-84 314.7 213 75.6
C07p30680 Brassica napus HOM05D001444 ORTHO05D004695 5.6e-84 314.7 213 75.6
BolC7t43613H Brassica oleracea HOM05D001444 ORTHO05D004695 5.6e-84 314.7 213 75.6
BraA06t27403Z Brassica rapa HOM05D001444 ORTHO05D004695 5.6e-84 314.7 213 75.6
Zm00001eb319680 Zea mays HOM05D001444 ORTHO05D004695 5.6e-84 314.7 209 77.5
Carub.0008s0078 Capsella rubella HOM05D001444 ORTHO05D004695 1.6e-83 313.2 213 74.6
AUR62018794 Chenopodium quinoa HOM05D001444 ORTHO05D004695 8.1e-83 310.8 224 72.8
ECA240G3842 Erigeron canadensis HOM05D001444 ORTHO05D004695 1.1e-82 310.5 208 78.4
THA.LOC104798463 Tarenaya hassleriana HOM05D001444 ORTHO05D004695 1.4e-82 310.1 213 74.6
TPR.G22720 Trifolium pratense HOM05D001444 ORTHO05D004695 2.6e-81 305.8 213 76.1
ATR0829G230 Amborella trichopoda HOM05D001444 ORTHO05D004695 3.4e-81 305.4 213 73.7
Peaxi162Scf00102g00735 Petunia axillaris HOM05D001444 ORTHO05D004695 9.9e-81 303.9 213 74.6
HPP92_025427 Vanilla planifolia HOM05D001444 ORTHO05D004695 3.0e-77 292.4 214 72.4
Zm00001eb103510 Zea mays HOM05D001444 ORTHO05D004695 3.9e-77 292.0 220 71.4
CDE02G0837 Ceratophyllum demersum HOM05D001444 ORTHO05D004695 3.3e-76 288.9 221 69.7
SEGI_38644 Sequoiadendron giganteum HOM05D001444 ORTHO05D004695 2.9e-72 275.8 216 67.1
COL.COLO4_06710 Corchorus olitorius HOM05D001444 ORTHO05D004695 7.1e-71 271.2 213 67.6
Rhsim07G0120800 Rhododendron simsii HOM05D001444 ORTHO05D004695 4.3e-68 261.9 294 53.1
EL10Ac5g12211 Beta vulgaris HOM05D001444 ORTHO05D004695 1.3e-67 260.4 168 77.4
SEGI_15546 Sequoiadendron giganteum HOM05D001444 ORTHO05D004695 7.6e-65 251.1 206 64.6
CARHR174430 Cardamine hirsuta HOM05D001444 ORTHO05D004695 1.7e-64 250.0 178 71.9
unitig_744.g24436 Utricularia gibba HOM05D001444 ORTHO05D004695 7.1e-63 244.6 191 69.6
SMO358G0587 Selaginella moellendorffii HOM05D001444 ORTHO05D004695 2.0e-57 226.5 206 59.7
Pp3c9_13420 Physcomitrium patens HOM05D001444 ORTHO05D004695 5.3e-50 201.8 222 51.8
Psat7g094080 Pisum sativum HOM05D001444 ORTHO05D004695 1.2e-49 200.7 145 70.3
Ah.12g053770 Amaranthus hybridus HOM05D001444 ORTHO05D004695 2.0e-44 183.3 103 87.4
CBR_g31118 Chara braunii HOM05D001444 ORTHO05D004695 3.3e-44 182.6 178 50.0
Lalb_Chr05g0220701 Lupinus albus HOM05D001444 ORTHO05D004695 4.1e-42 175.6 102 88.2
SMO199G0050 Selaginella moellendorffii HOM05D001444 ORTHO05D004695 4.2e-39 165.6 206 47.1
Lsat_1_v5_gn_5_10461 Lactuca sativa HOM05D001444 ORTHO05D004695 1.4e-29 134.0 87 79.3
SMO358G0490 Selaginella moellendorffii HOM05D001444 ORTHO05D004695 2.6e-28 129.8 207 41.1
Lalb_Chr05g0220711 Lupinus albus HOM05D001444 ORTHO05D004695 2.0e-25 120.2 75 82.7
MCO07G399 Micromonas commoda HOM05D001444 ORTHO05D004695 2.2e-16 90.1 218 28.4
MBI04_g40636_MAGBIO Magnolia biondii HOM05D001444 ORTHO05D004695 5.5e-15 85.5 144 42.4
MBI04_g03355_MAGBIO Magnolia biondii HOM05D001444 ORTHO05D004695 1.3e-11 74.3 46 80.4
Psat2g094440 Pisum sativum HOM05D000062 ORTHO05D013119 1.3e-08 64.3 39 82.1
MD04G1112700 Malus domestica HOM05D001444 ORTHO05D247131 6.1e-06 55.5 34 76.5


User provided reference genes

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