Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28812 Davidia involucrata HOM05D004226 ORTHO05D004842 5.0e-85 317.8 165 100.0
Dinv10439 Davidia involucrata HOM05D004226 ORTHO05D004842 5.9e-70 267.7 165 85.5
Actinidia23795 Actinidia chinensis HOM05D004226 ORTHO05D004842 1.8e-66 256.1 165 80.6
vmacro02815 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 6.4e-64 247.7 165 77.6
Lsat_1_v5_gn_8_98041 Lactuca sativa HOM05D004226 ORTHO05D004842 3.5e-62 241.9 170 76.5
TAR362G0792 Trochodendron aralioides HOM05D004226 ORTHO05D004842 7.8e-62 240.7 162 74.1
Actinidia30018 Actinidia chinensis HOM05D004226 ORTHO05D004842 5.0e-61 238.0 165 77.6
Lj2A1117T18 Lonicera japonica HOM05D004226 ORTHO05D004842 8.6e-61 237.3 165 77.6
Rhsim13G0052600 Rhododendron simsii HOM05D004226 ORTHO05D004842 1.9e-60 236.1 165 75.8
Hma1.2p1_0781F.1_g216920 Hydrangea macrophylla HOM05D004226 ORTHO05D004842 2.8e-59 232.3 178 74.7
Duzib138G1045 Durio zibethinus HOM05D004226 ORTHO05D004842 1.8e-58 229.6 163 74.8
Eucgr.H00726 Eucalyptus grandis HOM05D004226 ORTHO05D004842 3.1e-58 228.8 164 72.0
TAR365G1191 Trochodendron aralioides HOM05D004226 ORTHO05D004842 3.1e-58 228.8 162 72.2
Actinidia34543 Actinidia chinensis HOM05D004226 ORTHO05D004842 6.8e-58 227.6 165 74.5
HanXRQChr08g0231431 Helianthus annuus HOM05D004226 ORTHO05D004842 1.2e-57 226.9 168 75.0
Phvul.008G136900 Phaseolus vulgaris HOM05D004226 ORTHO05D004842 2.6e-57 225.7 165 71.5
Gorai.007G159600 Gossypium raimondii HOM05D004226 ORTHO05D004842 1.4e-55 219.9 163 69.9
Lalb_Chr01g0021991 Lupinus albus HOM05D004226 ORTHO05D004842 1.4e-55 219.9 166 68.7
Gohir.A11G142500 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.9e-55 219.5 163 70.6
Gohir.D11G148800 Gossypium hirsutum HOM05D004226 ORTHO05D004842 2.4e-55 219.2 163 70.6
VMungo1383G2422 Vigna mungo HOM05D004226 ORTHO05D004842 2.4e-55 219.2 165 70.9
Duzib133G0243 Durio zibethinus HOM05D004226 ORTHO05D004842 5.4e-55 218.0 163 71.8
HanXRQChr09g0257641 Helianthus annuus HOM05D004226 ORTHO05D004842 5.4e-55 218.0 167 70.7
Nitab4.5_0009151g0020 Nicotiana tabacum HOM05D004226 ORTHO05D004842 7.0e-55 217.6 162 73.5
Haze_03501 Corylus avellana HOM05D004226 ORTHO05D004842 9.2e-55 217.2 168 69.6
Glyma.18G152900 Glycine max HOM05D004226 ORTHO05D004842 9.2e-55 217.2 163 69.3
CiPaw.13G055300 Carya illinoinensis HOM05D004226 ORTHO05D004842 2.0e-54 216.1 164 68.9
Lalb_Chr03g0041091 Lupinus albus HOM05D004226 ORTHO05D004842 3.5e-54 215.3 164 68.3
Nitab4.5_0000038g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 3.5e-54 215.3 162 72.8
Aqoxy2G03959 Aquilegia oxysepala HOM05D004226 ORTHO05D004842 6.0e-54 214.5 165 67.9
MSTRG.18494 Avicennia marina HOM05D004226 ORTHO05D004842 7.8e-54 214.2 167 68.9
Migut.N00664 Erythranthe guttata HOM05D004226 ORTHO05D004842 2.3e-53 212.6 170 68.8
Cfa010569 Carpinus fangiana HOM05D004226 ORTHO05D004842 3.9e-53 211.8 168 68.5
Nn1g08255 Nelumbo nucifera HOM05D004226 ORTHO05D004842 6.6e-53 211.1 178 62.4
HanXRQChr16g0507911 Helianthus annuus HOM05D004226 ORTHO05D004842 1.9e-52 209.5 172 66.3
PGR083G1064 Punica granatum HOM05D004226 ORTHO05D004842 7.3e-52 207.6 171 67.3
DCAR_012646 Daucus carota HOM05D004226 ORTHO05D004842 1.6e-51 206.5 169 68.6
Cc01_g16140 Coffea canephora HOM05D004226 ORTHO05D004842 2.1e-51 206.1 170 69.4
CSS0019192 Camellia sinensis var. sinensis HOM05D004226 ORTHO05D004842 2.8e-51 205.7 128 84.4
ECA236G1737 Erigeron canadensis HOM05D004226 ORTHO05D004842 4.7e-51 204.9 166 67.5
Glyma.08G344200 Glycine max HOM05D004226 ORTHO05D004842 1.4e-50 203.4 164 65.2
Lj1g0015941 Lotus japonicus HOM05D004226 ORTHO05D004842 4.0e-50 201.8 165 65.5
Thecc.01G211100 Theobroma cacao HOM05D004226 ORTHO05D004842 5.2e-50 201.4 163 66.9
Oeu003656.1 Olea europaea HOM05D004226 ORTHO05D004842 1.2e-49 200.3 163 66.3
Hund02794 Selenicereus undatus HOM05D004226 ORTHO05D004842 9.8e-49 197.2 163 68.7
Cpa.g.sc8.73 Carica papaya HOM05D004226 ORTHO05D004842 1.3e-48 196.8 163 65.0
ECA247G2547 Erigeron canadensis HOM05D004226 ORTHO05D004842 1.3e-48 196.8 155 67.7
EL10Ac5g10626 Beta vulgaris HOM05D004226 ORTHO05D004842 2.2e-48 196.1 167 66.5
TAR633G1997 Trochodendron aralioides HOM05D004226 ORTHO05D004842 2.2e-48 196.1 162 64.8
MSTRG.21303 Avicennia marina HOM05D004226 ORTHO05D004842 2.9e-48 195.7 167 64.1
CANSAT01G0104 Cannabis sativa HOM05D004226 ORTHO05D004842 2.9e-48 195.7 169 65.7
TWI18G1341 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 4.9e-48 194.9 163 65.0
TWI36G1598 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 6.4e-48 194.5 165 62.4
vmacro14692 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 1.4e-47 193.4 161 67.7
SGA_v2.0_scaffold8G04494 Striga asiatica HOM05D004226 ORTHO05D004842 3.2e-47 192.2 166 66.3
Manes.12G054100 Manihot esculenta HOM05D004226 ORTHO05D004842 4.1e-47 191.8 158 66.5
QL09p046251 Quercus lobata HOM05D004226 ORTHO05D004842 9.2e-47 190.7 171 64.9
DCAR_018624 Daucus carota HOM05D004226 ORTHO05D004842 1.2e-46 190.3 164 64.0
Peaxi162Scf00372g00004 Petunia axillaris HOM05D004226 ORTHO05D004842 2.7e-46 189.1 156 66.0
Hund09468 Selenicereus undatus HOM05D004226 ORTHO05D004842 3.5e-46 188.7 171 62.6
SGA_v2.0_scaffold624G53238 Striga asiatica HOM05D004226 ORTHO05D004842 7.8e-46 187.6 166 64.5
Ciclev10016998m.g Citrus clementina HOM05D004226 ORTHO05D004842 1.3e-45 186.8 164 62.8
Rhsim01G0248500 Rhododendron simsii HOM05D004226 ORTHO05D004842 3.0e-45 185.7 164 64.6
Oeu057834.2 Olea europaea HOM05D000039 ORTHO05D005440 3.3e-44 182.2 159 61.6
Potri.002G251200 Populus trichocarpa HOM05D004226 ORTHO05D004842 3.3e-44 182.2 165 65.5
Sc17g0001670 Simmondsia chinensis HOM05D004226 ORTHO05D004842 9.5e-44 180.6 155 62.6
THA.LOC104802646 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 9.5e-44 180.6 167 64.1
Psat3g151000 Pisum sativum HOM05D004226 ORTHO05D004842 1.2e-43 180.3 165 60.0
ClCG05G015470 Citrullus lanatus HOM05D004226 ORTHO05D004842 8.1e-43 177.6 162 59.9
COL.COLO4_26572 Corchorus olitorius HOM05D004226 ORTHO05D004842 8.1e-43 177.6 166 60.8
SGA_v2.0_scaffold29G12070 Striga asiatica HOM05D004226 ORTHO05D004842 1.1e-42 177.2 195 55.9
Medtr7g052690 Medicago truncatula HOM05D004226 ORTHO05D004842 1.8e-42 176.4 167 59.9
TPR.G26804 Trifolium pratense HOM05D004226 ORTHO05D004842 3.1e-42 175.6 163 60.7
Nitab4.5_0002167g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 4.0e-42 175.3 163 61.3
Nitab4.5_0002311g0050 Nicotiana tabacum HOM05D004226 ORTHO05D004842 4.0e-42 175.3 163 60.7
DCAR_004767 Daucus carota HOM05D004226 ORTHO05D004842 1.2e-41 173.7 155 62.6
AUR62028700 Chenopodium quinoa HOM05D004226 ORTHO05D004842 5.8e-41 171.4 165 61.2
AUR62008122 Chenopodium quinoa HOM05D004226 ORTHO05D004842 7.6e-41 171.0 167 60.5
Ah.11g051030 Amaranthus hybridus HOM05D004226 ORTHO05D004842 4.9e-40 168.3 166 60.2
PGSC0003DMG400027348 Solanum tuberosum HOM05D004226 ORTHO05D004842 6.4e-40 167.9 163 60.1
Sopen11g003480 Solanum pennellii HOM05D004226 ORTHO05D004842 9.2e-39 164.1 163 57.1
Sopen06g002500 Solanum pennellii HOM05D004226 ORTHO05D004842 1.2e-38 163.7 163 58.9
Sabra02G0191000 Salix brachista HOM05D004226 ORTHO05D004842 2.1e-38 162.9 192 53.1
PGSC0003DMG400020653 Solanum tuberosum HOM05D004226 ORTHO05D004842 2.1e-38 162.9 163 60.1
HPP92_024259 Vanilla planifolia HOM05D004226 ORTHO05D004842 7.8e-38 161.0 149 59.7
Solyc06g007610.2 Solanum lycopersicum HOM05D004226 ORTHO05D004842 1.0e-37 160.6 163 58.3
MELO3C003732.2 Cucumis melo HOM05D004226 ORTHO05D004842 2.3e-37 159.5 156 54.5
Gohir.D07G094900 Gossypium hirsutum HOM05D004226 ORTHO05D004842 3.9e-37 158.7 149 60.4
Gorai.001G102200 Gossypium raimondii HOM05D004226 ORTHO05D004842 3.9e-37 158.7 149 60.4
THA.LOC104822467 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 5.1e-37 158.3 165 57.0
CsaV3_3G046080 Cucumis sativus L. HOM05D004226 ORTHO05D004842 6.6e-37 157.9 148 55.4
Gohir.A07G090200 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.9e-36 156.4 149 59.1
ATR0686G035 Amborella trichopoda HOM05D004226 ORTHO05D004842 3.6e-35 152.1 169 52.1
Aa31sc186G10 Aethionema arabicum HOM05D004226 ORTHO05D004842 8.1e-35 151.0 164 57.3
Migut.D00732 Erythranthe guttata HOM05D004226 ORTHO05D004842 8.1e-35 151.0 158 55.1
Sed0006210 Sechium edule HOM05D004226 ORTHO05D004842 8.1e-35 151.0 161 54.7
PSO017G4362 Papaver somniferum HOM05D004226 ORTHO05D004842 1.1e-34 150.6 171 52.6
THA.LOC104818997 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 1.4e-34 150.2 165 54.5
PSO675G4654 Papaver somniferum HOM05D004226 ORTHO05D004842 3.1e-34 149.1 162 53.1
CAN.G181.39 Capsicum annuum HOM05D004226 ORTHO05D004842 4.0e-34 148.7 144 59.7
Duzib168G0485 Durio zibethinus HOM05D004226 ORTHO05D004842 6.9e-34 147.9 143 57.3
Migut.D00735 Erythranthe guttata HOM05D004226 ORTHO05D004842 2.2e-32 142.9 161 54.0
Prupe.8G190400 Prunus persica HOM05D004226 ORTHO05D004842 2.2e-32 142.9 165 52.1
Sp2g18850 Schrenkiella parvula HOM05D004226 ORTHO05D004842 2.2e-32 142.9 163 55.2
CDE05G1161 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 6.4e-32 141.4 151 53.6
SEGI_00481 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 8.4e-32 141.0 171 50.9
C09p04850 Brassica napus HOM05D004226 ORTHO05D004842 3.2e-31 139.0 151 53.6
Lj3g0009756 Lotus japonicus HOM05D004226 ORTHO05D004842 4.2e-31 138.7 151 54.3
Duzib170G0075 Durio zibethinus HOM05D004226 ORTHO05D004842 9.3e-31 137.5 140 57.9
Thhalv10005050m.g Eutrema salsugineum HOM05D004226 ORTHO05D004842 9.3e-31 137.5 159 53.5
Duzib138G0271 Durio zibethinus HOM05D004226 ORTHO05D004842 1.2e-30 137.1 140 53.6
BcaC03g17654 Brassica carinata HOM05D004226 ORTHO05D004842 1.6e-30 136.7 148 53.4
A06p39150 Brassica napus HOM05D004226 ORTHO05D004842 1.6e-30 136.7 165 51.5
BolC2t11714H Brassica oleracea HOM05D004226 ORTHO05D004842 1.6e-30 136.7 148 53.4
Mapoly0001s0501 Marchantia polymorpha HOM05D004226 ORTHO05D004842 1.6e-30 136.7 159 49.7
C02p56560 Brassica napus HOM05D004226 ORTHO05D004842 2.7e-30 136.0 148 53.4
BolC7t44438H Brassica oleracea HOM05D004226 ORTHO05D004842 2.7e-30 136.0 162 53.1
Duzib211G0475 Durio zibethinus HOM05D004226 ORTHO05D004842 2.7e-30 136.0 140 53.6
BcaC06g30793 Brassica carinata HOM05D004226 ORTHO05D004842 4.6e-30 135.2 162 53.7
Lj3g0001126 Lotus japonicus HOM05D004226 ORTHO05D004842 4.6e-30 135.2 145 55.9
BraA06t26830Z Brassica rapa HOM05D004226 ORTHO05D004842 6.0e-30 134.8 161 51.6
A02p37490 Brassica napus HOM05D004226 ORTHO05D004842 1.7e-29 133.3 148 50.7
BcaC04g23773 Brassica carinata HOM05D004226 ORTHO05D004842 5.1e-29 131.7 163 49.1
BolC9t53412H Brassica oleracea HOM05D004226 ORTHO05D004842 5.1e-29 131.7 163 49.1
C07p39180 Brassica napus HOM05D004226 ORTHO05D004842 6.6e-29 131.3 164 52.4
A09p04540 Brassica napus HOM05D004226 ORTHO05D004842 8.7e-29 131.0 164 50.0
BraA09t36089Z Brassica rapa HOM05D004226 ORTHO05D004842 8.7e-29 131.0 164 50.0
BraA02t08736Z Brassica rapa HOM05D004226 ORTHO05D004842 2.5e-28 129.4 148 51.4
Duzib205G0826 Durio zibethinus HOM05D004226 ORTHO05D004842 2.5e-28 129.4 157 47.1
Atru.chr6.3547 Acer truncatum HOM05D004226 ORTHO05D004842 3.3e-28 129.0 130 52.3
Carub.0008s0806 Capsella rubella HOM05D004226 ORTHO05D004842 4.8e-27 125.2 170 46.5
Ca_07469_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 1.8e-26 123.2 91 68.1
Ca_30573_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 1.8e-26 123.2 91 68.1
CDE05G0628 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 6.9e-26 121.3 119 57.1
SHI10249 Sapria himalayana HOM05D004226 ORTHO05D004842 1.3e-24 117.1 141 51.1
SMO146G0354 Selaginella moellendorffii HOM05D004226 ORTHO05D004842 6.4e-24 114.8 132 50.0
Duzib147G0221 Durio zibethinus HOM05D004226 ORTHO05D004842 2.1e-22 109.8 126 49.2
AT5G48480 Arabidopsis thaliana HOM05D004226 ORTHO05D004842 3.5e-22 109.0 163 45.4
BcaB07g30025 Brassica carinata HOM05D004226 ORTHO05D004842 4.6e-22 108.6 157 47.1
CARHR183600 Cardamine hirsuta HOM05D004226 ORTHO05D004842 4.6e-22 108.6 161 42.2
Cfa011865 Carpinus fangiana HOM05D004226 ORTHO05D004842 5.1e-21 105.1 92 63.0
AL8G21330 Arabidopsis lyrata HOM05D004226 ORTHO05D004842 1.1e-20 104.0 166 44.0
Lj2P1154T27 Lonicera japonica HOM05D004226 ORTHO05D004842 1.1e-20 104.0 78 70.5
FvH4_2g17810 Fragaria vesca HOM05D004226 ORTHO05D004842 5.6e-20 101.7 167 44.3
FAN24G0678 Fragaria x ananassa HOM05D004226 ORTHO05D004842 7.4e-20 101.3 167 44.3
RcHm_v2.0_Chr6g0282841 Rosa chinensis HOM05D004226 ORTHO05D004842 2.8e-19 99.4 163 44.8
FAN15G3314 Fragaria x ananassa HOM05D004226 ORTHO05D004842 8.1e-19 97.8 164 43.9
FAN27G2858 Fragaria x ananassa HOM05D004226 ORTHO05D004842 1.8e-18 96.7 161 44.1
FAN27G3147 Fragaria x ananassa HOM05D004226 ORTHO05D004842 1.8e-18 96.7 161 44.1
MD10G1152100 Malus domestica HOM05D004226 ORTHO05D004842 9.9e-17 90.9 167 38.3
Sc19g0005500 Simmondsia chinensis HOM05D004226 ORTHO05D004842 2.2e-16 89.7 74 62.2
Psat0s337g0040 Pisum sativum HOM05D004226 ORTHO05D004842 2.9e-16 89.4 93 53.8
BcaB07g30020 Brassica carinata HOM05D004226 ORTHO05D004842 6.4e-16 88.2 106 51.9
MD05G1159600 Malus domestica HOM05D004226 ORTHO05D004842 1.1e-15 87.4 170 37.6
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 1.0e-13 80.9 87 55.2
Glyma.14G148600 Glycine max HOM05D004226 ORTHO05D004842 1.8e-13 80.1 69 60.9
Nn4g25974 Nelumbo nucifera HOM05D066638 ORTHO05D004842 1.5e-12 77.0 59 59.3
Pp3c13_5750 Physcomitrium patens HOM05D004226 ORTHO05D004842 3.3e-12 75.9 143 35.7
unitig_0.g1219 Utricularia gibba HOM05D004226 ORTHO05D004842 3.3e-12 75.9 72 52.8
BcaC06g31007 Brassica carinata HOM05D004226 ORTHO05D004842 5.6e-12 75.1 159 39.0
Nn7g37876 Nelumbo nucifera HOM05D001231 ORTHO05D001012 7.4e-12 74.7 58 58.6
Nn7g37465 Nelumbo nucifera HOM05D004226 ORTHO05D004842 8.1e-11 71.2 59 54.2
Peaxi162Scf00585g01023 Petunia axillaris HOM05D004226 ORTHO05D004842 1.2e-09 67.4 77 55.8
SEGI_39221 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 1.2e-09 67.4 76 48.7
Rhsim06G0095600 Rhododendron simsii HOM05D003225 ORTHO05D338509 2.6e-09 66.2 70 55.7
Medtr8g011510 Medicago truncatula HOM05D004226 ORTHO05D004842 4.9e-08 62.0 133 36.8
SEGI_14551 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 4.9e-08 62.0 61 57.4
SEGI_24806 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 4.9e-08 62.0 61 57.4
Peaxi162Scf00462g00004 Petunia axillaris HOM05D004226 ORTHO05D004842 1.1e-07 60.8 77 54.5
Ciclev10023033m.g Citrus clementina HOM05D004226 ORTHO05D004842 5.5e-07 58.5 51 60.8
Ciclev10023098m.g Citrus clementina HOM05D004226 ORTHO05D004842 9.3e-07 57.8 42 66.7
DCAR_023429 Daucus carota HOM05D057861 ORTHO05D004842 2.1e-06 56.6 141 31.2
DCAR_015184 Daucus carota HOM05D033564 ORTHO05D178306 7.9e-06 54.7 51 58.8


User provided reference genes

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