Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 2.0e-71 272.3 136 100.0
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 5.3e-48 194.5 125 79.2
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 6.9e-48 194.1 120 81.7
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 1.5e-47 193.0 122 81.1
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 1.5e-47 193.0 120 80.8
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 2.0e-47 192.6 125 78.4
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 4.5e-47 191.4 122 78.7
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 4.5e-47 191.4 111 85.6
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 4.5e-47 191.4 127 79.5
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 4.5e-47 191.4 112 85.7
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 5.8e-47 191.0 134 75.4
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 9.9e-47 190.3 127 76.4
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 1.3e-46 189.9 122 78.7
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 1.3e-46 189.9 110 85.5
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 2.2e-46 189.1 109 86.2
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.2e-46 189.1 112 84.8
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.9e-46 188.7 112 84.8
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 3.8e-46 188.3 112 83.0
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 4.9e-46 188.0 110 84.5
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 6.4e-46 187.6 120 78.3
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 6.4e-46 187.6 110 82.7
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 8.4e-46 187.2 112 82.1
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.1e-45 186.8 112 83.9
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 1.4e-45 186.4 112 83.0
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 1.4e-45 186.4 112 83.0
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 1.4e-45 186.4 109 85.3
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.9e-45 186.0 110 83.6
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 1.9e-45 186.0 120 80.0
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 1.9e-45 186.0 110 83.6
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 4.2e-45 184.9 110 82.7
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 4.2e-45 184.9 111 82.9
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 7.1e-45 184.1 119 76.5
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 7.1e-45 184.1 110 82.7
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 9.3e-45 183.7 112 81.2
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 9.3e-45 183.7 121 75.2
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 9.3e-45 183.7 112 83.0
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 1.2e-44 183.3 119 76.5
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.2e-44 183.3 112 82.1
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 1.2e-44 183.3 110 80.9
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.6e-44 183.0 111 81.1
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 1.6e-44 183.0 110 83.6
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 2.1e-44 182.6 112 82.1
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 2.1e-44 182.6 110 81.8
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 2.7e-44 182.2 109 84.4
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 2.7e-44 182.2 109 83.5
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 3.5e-44 181.8 110 80.0
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 3.5e-44 181.8 116 78.4
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 4.6e-44 181.4 112 80.4
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 4.6e-44 181.4 108 83.3
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 4.6e-44 181.4 109 80.7
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 6.0e-44 181.0 110 80.9
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 6.0e-44 181.0 122 74.6
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 6.0e-44 181.0 110 81.8
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 7.9e-44 180.6 120 75.0
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 7.9e-44 180.6 112 80.4
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 7.9e-44 180.6 112 81.2
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 1.3e-43 179.9 109 83.5
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 1.8e-43 179.5 112 79.5
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 2.3e-43 179.1 112 81.2
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 2.3e-43 179.1 110 80.0
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 3.0e-43 178.7 110 78.2
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 3.0e-43 178.7 112 78.6
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 3.9e-43 178.3 111 82.0
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 3.9e-43 178.3 120 75.8
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 3.9e-43 178.3 110 80.0
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 5.1e-43 177.9 120 74.2
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 8.7e-43 177.2 120 75.0
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 8.7e-43 177.2 120 75.0
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 8.7e-43 177.2 120 75.0
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 8.7e-43 177.2 118 76.3
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 1.1e-42 176.8 110 80.9
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 1.9e-42 176.0 118 76.3
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 1.9e-42 176.0 120 74.2
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 1.9e-42 176.0 120 74.2
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 1.9e-42 176.0 139 66.2
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 3.3e-42 175.3 112 77.7
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 5.6e-42 174.5 108 80.6
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 7.4e-42 174.1 118 75.4
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 7.4e-42 174.1 118 74.6
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 7.4e-42 174.1 117 76.1
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 1.6e-41 172.9 110 76.4
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 2.1e-41 172.6 118 74.6
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.7e-41 171.8 120 70.8
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 4.8e-41 171.4 120 70.0
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.1e-40 170.2 110 74.5
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.4e-40 169.9 112 75.9
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.4e-40 169.1 110 75.5
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 2.0e-39 166.0 106 79.2
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.4e-37 159.1 112 74.1
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 4.2e-37 158.3 122 63.9
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 4.2e-37 158.3 124 67.7
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 1.2e-36 156.8 112 69.6
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.2e-36 156.8 112 69.6
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 2.1e-36 156.0 112 71.4
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 3.5e-36 155.2 107 72.0
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 6.0e-36 154.5 103 70.9
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 7.9e-36 154.1 112 74.1
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 2.3e-35 152.5 111 67.6
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 2.3e-35 152.5 112 67.0
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 3.0e-35 152.1 94 80.9
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 6.7e-35 151.0 108 71.3
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 1.1e-34 150.2 108 70.4
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 2.5e-34 149.1 118 64.4
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.5e-34 149.1 112 63.4
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 2.5e-34 149.1 112 67.9
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 4.3e-34 148.3 108 69.4
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 7.4e-34 147.5 94 80.9
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 9.6e-34 147.1 91 80.2
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 9.6e-34 147.1 111 64.9
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.3e-33 146.7 96 72.9
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.3e-33 146.7 118 61.9
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 1.6e-33 146.4 108 69.4
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.6e-33 146.4 112 62.5
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 6.9e-32 141.0 120 60.0
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 1.3e-30 136.7 131 54.2
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 2.2e-30 136.0 74 83.8
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 4.9e-30 134.8 137 52.6
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 4.9e-30 134.8 110 62.7
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.1e-29 133.7 110 67.3
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.4e-29 133.3 113 57.5
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.5e-29 132.5 107 66.4
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 3.2e-29 132.1 73 82.2
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 1.8e-27 126.3 112 62.5
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 2.3e-27 125.9 132 56.8
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 3.9e-27 125.2 94 71.3
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 6.7e-27 124.4 120 50.8
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 6.7e-27 124.4 106 63.2
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 1.1e-26 123.6 119 54.6
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 4.8e-25 118.2 115 54.8
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 2.4e-24 115.9 69 82.6
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 4.1e-24 115.2 82 63.4
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 5.3e-24 114.8 120 57.5
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 1.7e-22 109.8 79 74.7
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.9e-22 109.0 119 56.3
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 3.8e-22 108.6 90 67.8
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 3.8e-22 108.6 122 54.9
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 5.0e-22 108.2 70 77.1
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.9e-21 106.3 71 74.6
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 6.1e-20 101.3 76 60.5
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 8.8e-19 97.4 107 55.1
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 3.3e-18 95.5 70 72.9
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 4.1e-16 88.6 62 71.0
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.0e-11 73.9 112 42.0
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 6.7e-11 71.2 45 75.6
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 2.0e-10 69.7 48 70.8
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.3e-09 67.0 47 59.6
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 9.1e-08 60.8 35 77.1
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 1.2e-07 60.5 123 35.8
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.7e-06 56.6 40 65.0


User provided reference genes

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