Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 1.3e-227 792.7 415 100.0
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 3.3e-186 655.2 390 88.5
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 5.0e-182 641.3 410 84.6
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 1.1e-181 640.2 403 85.6
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 1.4e-176 623.2 408 83.3
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 1.4e-173 613.2 379 86.0
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.1e-172 609.4 422 81.0
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 2.7e-172 609.0 383 84.1
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.8e-171 606.3 420 80.7
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 2.0e-170 602.8 418 79.7
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 1.7e-169 599.7 400 81.2
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 2.8e-169 599.0 384 82.0
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 4.8e-169 598.2 422 77.7
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 1.8e-168 596.3 400 81.5
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 1.8e-168 596.3 381 82.9
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 3.1e-168 595.5 418 77.5
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 4.1e-168 595.1 380 82.6
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 1.6e-167 593.2 402 79.4
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 4.5e-167 591.7 417 77.2
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 5.9e-167 591.3 380 82.9
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 7.7e-167 590.9 365 85.5
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 1.0e-166 590.5 417 79.1
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 2.9e-166 589.0 380 81.8
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 1.1e-165 587.0 380 81.8
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.5e-165 586.6 360 84.7
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 1.5e-165 586.6 384 82.0
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 1.9e-165 586.3 419 77.3
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 1.9e-165 586.3 384 81.8
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 1.9e-165 586.3 384 82.0
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 3.2e-165 585.5 412 76.7
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 7.2e-165 584.3 393 80.2
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 7.2e-165 584.3 365 84.4
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 1.6e-164 583.2 351 87.5
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 1.6e-164 583.2 402 77.4
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 4.7e-164 581.6 399 81.0
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 4.7e-164 581.6 422 77.0
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 8.0e-164 580.9 396 79.3
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 1.8e-163 579.7 380 80.3
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 1.8e-163 579.7 412 76.9
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 1.8e-163 579.7 379 81.5
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.8e-163 579.7 378 80.2
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 4.0e-163 578.6 416 76.2
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 5.2e-163 578.2 383 80.2
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 1.1e-162 577.0 406 76.6
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 1.5e-162 576.6 416 76.9
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 1.5e-162 576.6 366 83.3
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 2.0e-162 576.2 375 81.3
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 2.0e-162 576.2 415 73.7
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 3.3e-162 575.5 384 80.2
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 3.3e-162 575.5 396 78.8
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 5.7e-162 574.7 416 74.5
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 9.7e-162 573.9 416 76.2
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 1.3e-161 573.5 393 78.9
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.7e-161 573.2 327 92.0
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 2.8e-161 572.4 418 73.9
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 6.3e-161 571.2 422 74.6
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 1.4e-160 570.1 416 74.3
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.8e-160 569.7 380 79.5
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 2.4e-160 569.3 385 77.1
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 4.1e-160 568.5 417 74.3
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 4.1e-160 568.5 380 79.2
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 5.3e-160 568.2 415 76.1
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 5.3e-160 568.2 412 75.0
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 5.3e-160 568.2 362 82.9
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 5.3e-160 568.2 362 82.9
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 9.1e-160 567.4 423 74.5
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 2.0e-159 566.2 385 78.2
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 2.7e-159 565.8 388 77.8
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 2.7e-159 565.8 347 85.0
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 3.5e-159 565.5 385 77.9
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 3.5e-159 565.5 371 80.9
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 3.5e-159 565.5 416 73.8
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 5.9e-159 564.7 415 73.5
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 1.7e-158 563.1 424 72.6
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 1.7e-158 563.1 415 73.7
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 1.7e-158 563.1 415 73.7
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 2.2e-158 562.8 381 78.2
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 3.8e-158 562.0 412 75.5
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 5.0e-158 561.6 416 72.6
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 1.5e-157 560.1 387 79.1
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 3.2e-157 558.9 415 73.0
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 4.2e-157 558.5 389 77.4
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 5.5e-157 558.1 378 79.6
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 1.6e-156 556.6 332 85.5
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 4.7e-156 555.1 346 83.2
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 6.1e-156 554.7 390 75.6
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 8.0e-156 554.3 389 75.3
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 1.8e-155 553.1 390 75.4
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.3e-155 552.7 411 73.5
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.3e-155 552.7 411 73.5
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 2.3e-155 552.7 441 70.7
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 3.0e-155 552.4 384 77.9
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 4.0e-155 552.0 415 74.2
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 8.8e-155 550.8 416 72.1
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 1.2e-154 550.4 412 73.3
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.5e-154 550.1 411 73.2
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 1.5e-154 550.1 398 75.4
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.0e-154 549.7 411 73.0
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.0e-154 549.7 411 73.0
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 5.7e-154 548.1 385 75.8
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 1.7e-153 546.6 340 83.5
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 2.8e-153 545.8 415 72.0
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 4.8e-153 545.0 417 73.1
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 9.1e-152 540.8 398 72.9
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 1.6e-151 540.0 334 84.7
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 3.5e-151 538.9 426 71.8
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.1e-149 533.9 332 83.4
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 1.6e-148 530.0 297 92.6
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 1.5e-146 523.5 326 82.8
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 1.8e-144 516.5 384 73.7
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 4.1e-144 515.4 393 70.7
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.6e-143 513.5 297 88.2
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 3.8e-142 508.8 297 88.9
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 1.5e-141 506.9 307 84.4
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 2.1e-140 503.1 381 73.5
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 4.0e-139 498.8 330 78.8
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 3.7e-137 492.3 392 67.9
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 2.7e-135 486.1 317 79.2
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 4.6e-135 485.3 336 77.1
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 1.3e-134 483.8 365 72.3
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.1e-133 480.7 389 72.2
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 1.2e-132 477.2 420 66.0
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 1.4e-131 473.8 333 73.9
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 8.3e-129 464.5 426 62.9
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 3.3e-125 452.6 317 73.2
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 1.5e-117 427.2 246 91.9
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 3.3e-117 426.0 272 84.2
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 5.6e-117 425.2 321 70.7
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 3.1e-115 419.5 367 65.9
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 6.2e-108 395.2 353 60.1
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 9.9e-106 387.9 279 69.9
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 1.1e-96 357.8 309 61.5
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.9e-93 347.1 198 92.4
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 4.2e-80 302.8 378 51.9
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 5.5e-80 302.4 198 80.8
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 5.5e-80 302.4 198 80.8
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 3.1e-75 286.6 166 88.6
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 2.6e-66 256.9 294 48.3
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.0e-62 245.0 129 94.6
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 1.5e-58 231.1 293 45.4
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.8e-54 217.6 328 41.8
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 5.2e-54 216.1 154 76.0
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 4.5e-50 203.0 199 61.8
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.2e-48 196.4 176 64.2
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 2.7e-39 167.2 137 67.2
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 7.5e-37 159.1 239 46.9
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.8e-35 154.5 149 58.4
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 3.4e-29 133.7 80 83.8
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.8e-28 130.6 86 73.3
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 9.2e-19 99.0 75 72.0
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 3.6e-15 87.0 48 91.7
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 3.1e-14 84.0 59 71.2
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 1.5e-13 81.6 85 55.3
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 4.9e-12 76.6 62 69.4
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 9.2e-11 72.4 43 86.0
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 3.5e-10 70.5 42 69.0
ATR0037G072 Amborella trichopoda HOM05D004740 ORTHO05D066598 1.7e-09 68.2 94 42.6


User provided reference genes

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