Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 5.0e-221 770.8 381 100.0
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 1.3e-192 676.4 384 87.5
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 4.0e-162 575.1 383 76.2
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 6.8e-162 574.3 383 75.7
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 4.9e-152 541.6 386 72.3
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 4.6e-150 535.0 378 72.5
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 1.3e-147 526.9 384 69.3
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 5.3e-146 521.5 352 73.3
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 1.3e-144 516.9 352 73.6
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 1.6e-142 510.0 380 70.3
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 2.1e-142 509.6 372 69.9
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 3.5e-142 508.8 380 67.4
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 7.9e-142 507.7 371 69.3
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 2.3e-141 506.1 447 60.9
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 3.0e-141 505.8 372 69.1
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 6.7e-141 504.6 359 69.6
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.1e-140 503.8 378 68.5
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.5e-140 503.4 381 66.7
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.9e-140 503.1 372 69.6
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 5.6e-140 501.5 386 66.3
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 2.8e-139 499.2 372 68.8
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 1.1e-138 497.3 380 66.6
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 1.4e-138 496.9 369 69.1
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 1.4e-138 496.9 359 68.2
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 4.0e-138 495.4 387 65.9
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 5.3e-138 495.0 374 67.1
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 1.2e-137 493.8 383 66.1
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.5e-137 493.4 387 65.4
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 3.4e-137 492.3 387 65.6
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 4.5e-137 491.9 371 67.1
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 7.6e-137 491.1 368 67.7
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.7e-136 490.0 387 65.4
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 4.9e-136 488.4 371 68.2
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 6.4e-136 488.0 355 69.9
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 4.2e-135 485.3 365 67.4
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 7.1e-135 484.6 374 66.6
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 9.3e-135 484.2 373 68.1
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 2.7e-134 482.6 383 65.5
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 1.0e-133 480.7 371 66.6
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 1.8e-133 479.9 368 66.3
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 2.3e-133 479.6 379 66.2
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.9e-133 478.8 413 61.5
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 1.5e-132 476.9 348 69.5
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.5e-132 476.9 373 66.5
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 3.3e-132 475.7 341 69.8
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 3.3e-132 475.7 378 66.7
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.1e-130 469.2 361 66.8
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 1.5e-129 466.8 370 66.5
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 1.7e-128 463.4 376 65.4
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 1.9e-127 459.9 380 63.4
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 9.7e-124 447.6 349 64.8
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 2.8e-123 446.0 376 62.5
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 3.7e-123 445.7 323 67.8
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 6.3e-123 444.9 380 63.9
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 8.2e-123 444.5 347 64.6
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 8.2e-123 444.5 376 65.4
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 9.0e-122 441.0 283 76.7
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 5.0e-120 435.3 329 68.7
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 9.4e-119 431.0 378 60.6
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 2.1e-118 429.9 380 61.6
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 2.7e-118 429.5 378 59.3
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 3.6e-118 429.1 331 64.7
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 3.9e-117 425.6 370 61.6
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.1e-116 424.1 380 61.1
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 2.0e-116 423.3 352 63.1
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 3.3e-116 422.5 324 67.3
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 7.4e-116 421.4 384 60.2
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 7.4e-116 421.4 371 60.9
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 8.2e-115 417.9 374 60.4
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 8.2e-115 417.9 346 62.1
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 8.2e-115 417.9 371 57.4
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 4.1e-114 415.6 362 60.8
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 6.9e-114 414.8 375 58.4
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 9.1e-114 414.5 386 58.5
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 2.6e-113 412.9 385 58.7
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 5.9e-113 411.8 352 62.2
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 5.9e-113 411.8 359 60.7
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 5.9e-113 411.8 348 60.1
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 3.8e-112 409.1 395 59.0
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 4.2e-111 405.6 374 58.3
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 7.2e-111 404.8 399 57.1
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 2.7e-110 402.9 377 57.8
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 3.6e-110 402.5 279 71.7
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 1.0e-109 401.0 368 58.2
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.3e-109 399.8 279 71.3
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.3e-108 396.0 329 64.1
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 4.4e-108 395.6 377 57.0
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 1.3e-107 394.0 347 59.4
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 3.7e-107 392.5 319 63.9
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 4.8e-107 392.1 297 65.0
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 7.0e-106 388.3 335 60.9
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 1.2e-105 387.5 338 62.1
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 1.2e-105 387.5 330 61.2
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 2.0e-105 386.7 327 62.1
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 2.6e-105 386.3 339 60.2
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 4.5e-105 385.6 328 61.3
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 7.7e-105 384.8 329 60.5
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.3e-104 384.0 320 61.9
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 1.3e-104 384.0 335 60.0
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 5.0e-104 382.1 327 61.2
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 7.2e-103 378.3 333 58.3
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 6.1e-102 375.2 280 69.6
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 1.0e-101 374.4 332 59.6
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 1.8e-101 373.6 332 59.6
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 2.8e-99 366.3 560 42.0
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 1.1e-98 364.4 274 67.5
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 1.0e-96 357.8 332 58.1
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 4.2e-95 352.4 339 54.3
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 9.4e-95 351.3 332 56.0
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 2.0e-92 343.6 281 63.3
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 5.3e-90 335.5 292 58.9
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 1.2e-86 324.3 350 49.4
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 4.8e-83 312.4 288 55.2
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 2.9e-80 303.1 262 62.2
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 2.1e-70 270.4 242 57.4
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 4.6e-65 252.7 190 67.9
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 3.3e-63 246.5 279 46.2
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 4.3e-63 246.1 300 43.3
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 2.3e-61 240.4 292 46.2
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 3.1e-61 240.0 268 47.8
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 6.4e-59 232.3 283 45.9
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.9e-58 230.7 278 43.9
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.4e-53 214.5 163 65.0
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 4.4e-52 209.5 277 43.3
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 1.4e-42 177.9 176 57.4
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 2.8e-38 163.7 139 61.9
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 7.6e-36 155.6 139 59.7
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 1.8e-29 134.4 86 73.3
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 7.1e-26 122.5 169 46.2
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 9.6e-23 112.1 85 67.1
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 8.1e-22 109.0 106 57.5
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 2.2e-19 100.9 77 70.1
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 4.2e-18 96.7 122 49.2
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 4.2e-18 96.7 122 49.2
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 4.6e-17 93.2 87 60.9
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.7e-11 74.7 71 59.2
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.1e-10 72.0 97 40.2
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 9.3e-10 68.9 58 62.1
HanXRQChr05g0151741 Helianthus annuus HOM05D004293 ORTHO05D005044 4.3e-07 60.1 93 38.7
Gohir.D05G260400 Gossypium hirsutum HOM05D004293 ORTHO05D005044 1.3e-06 58.5 94 34.0
Gorai.009G272300 Gossypium raimondii HOM05D004293 ORTHO05D005044 1.3e-06 58.5 94 34.0
ECA246G0240 Erigeron canadensis HOM05D004293 ORTHO05D005044 1.6e-06 58.2 86 37.2
Hund16444 Selenicereus undatus HOM05D004293 ORTHO05D005044 2.8e-06 57.4 128 30.5
Gohir.A05G258700 Gossypium hirsutum HOM05D004293 ORTHO05D005044 3.7e-06 57.0 94 34.0
Lsat_1_v5_gn_5_27761 Lactuca sativa HOM05D004293 ORTHO05D005044 3.7e-06 57.0 86 37.2
Aqoxy6G01151 Aquilegia oxysepala HOM05D004293 ORTHO05D005044 6.3e-06 56.2 97 38.1


User provided reference genes

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