Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 2.8e-108 395.2 188 100.0
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.3e-84 316.6 175 82.3
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.3e-84 316.6 175 82.3
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 1.6e-82 309.7 181 75.7
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 2.6e-82 308.9 178 78.7
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 5.9e-82 307.8 175 79.4
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 1.7e-81 306.2 177 76.3
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 1.7e-81 306.2 182 75.3
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 3.2e-80 302.0 177 75.1
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 3.2e-80 302.0 174 77.6
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 4.2e-80 301.6 179 74.3
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 5.5e-80 301.2 181 76.8
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 7.2e-80 300.8 178 75.3
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 1.6e-79 299.7 172 78.5
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 2.1e-79 299.3 178 74.7
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 8.0e-79 297.4 179 73.7
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 1.8e-78 296.2 181 71.8
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 1.2e-77 293.5 176 72.7
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 1.5e-77 293.1 181 71.8
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 2.0e-77 292.7 180 72.8
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 2.0e-77 292.7 178 75.3
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 2.0e-77 292.7 183 72.1
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 4.4e-77 291.6 179 74.3
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 4.4e-77 291.6 182 74.2
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 4.4e-77 291.6 179 70.9
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 2.2e-76 289.3 178 72.5
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 2.8e-76 288.9 176 72.7
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 1.1e-75 287.0 177 74.0
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 3.1e-75 285.4 176 71.6
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 4.1e-75 285.0 181 69.6
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 5.3e-75 284.6 179 70.4
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 7.0e-75 284.3 182 69.2
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 7.0e-75 284.3 179 70.4
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 9.1e-75 283.9 179 73.7
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 2.0e-74 282.7 178 70.8
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 2.7e-74 282.3 176 71.0
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 2.7e-74 282.3 178 70.2
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 4.5e-74 281.6 182 68.7
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 7.7e-74 280.8 181 69.1
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 1.0e-73 280.4 180 70.6
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 1.0e-73 280.4 180 68.9
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 1.3e-73 280.0 181 71.3
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 1.7e-73 279.6 178 68.5
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 2.2e-73 279.3 178 70.8
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 3.8e-73 278.5 177 67.2
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 3.8e-73 278.5 178 67.4
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 5.0e-73 278.1 182 68.1
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 5.0e-73 278.1 181 67.4
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 6.5e-73 277.7 178 67.4
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 1.1e-72 276.9 180 66.7
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 1.1e-72 276.9 181 66.3
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 2.5e-72 275.8 181 69.6
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 3.2e-72 275.4 181 67.4
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 4.2e-72 275.0 178 66.9
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 4.2e-72 275.0 177 67.8
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 4.2e-72 275.0 176 70.5
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 5.5e-72 274.6 176 66.5
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 7.2e-72 274.2 177 69.5
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 9.4e-72 273.9 176 68.8
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 1.2e-71 273.5 175 69.7
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.2e-71 273.5 180 67.8
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 1.6e-71 273.1 183 70.5
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 2.1e-71 272.7 180 68.9
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 2.7e-71 272.3 176 71.0
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 2.7e-71 272.3 173 69.4
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 3.6e-71 271.9 179 70.9
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 6.1e-71 271.2 181 69.6
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 6.1e-71 271.2 174 70.1
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 6.1e-71 271.2 174 69.5
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 1.4e-70 270.0 181 66.3
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 1.8e-70 269.6 171 70.8
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 1.8e-70 269.6 176 68.2
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 2.3e-70 269.2 186 66.1
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 2.3e-70 269.2 154 77.3
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 2.3e-70 269.2 181 66.3
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 4.0e-70 268.5 186 66.1
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 5.2e-70 268.1 173 71.1
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 4.4e-69 265.0 181 68.0
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 5.7e-69 264.6 175 67.4
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 1.3e-68 263.5 183 65.0
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 2.2e-68 262.7 153 75.8
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 8.3e-68 260.8 171 70.8
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 4.1e-67 258.5 167 68.9
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 4.1e-67 258.5 171 70.2
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 3.5e-66 255.4 182 62.1
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 1.0e-65 253.8 178 61.8
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 6.5e-65 251.1 152 74.3
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 8.6e-65 250.8 181 62.4
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 8.6e-65 250.8 181 62.4
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 7.2e-64 247.7 151 72.2
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 6.1e-63 244.6 172 59.3
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 1.4e-62 243.4 176 59.7
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 6.8e-62 241.1 181 59.1
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 1.2e-61 240.4 173 63.6
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 1.2e-61 240.4 172 64.5
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 5.7e-61 238.0 175 62.3
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 1.7e-60 236.5 166 65.1
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.7e-60 236.5 149 71.1
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.4e-59 233.4 152 67.1
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 1.8e-59 233.0 165 64.8
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 4.5e-58 228.4 168 60.1
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 1.3e-57 226.9 173 62.4
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 8.0e-55 217.6 158 61.4
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 2.2e-52 209.5 169 58.0
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 1.2e-47 193.7 133 64.7
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 2.1e-47 193.0 181 47.5
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 3.4e-45 185.7 186 46.8
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 1.3e-44 183.7 143 61.5
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 3.7e-44 182.2 177 44.6
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 3.5e-42 175.6 123 64.2
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 5.0e-41 171.8 179 44.7
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 4.4e-37 158.7 183 43.2
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.9e-33 145.6 133 54.9
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 2.1e-26 123.2 153 45.1
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 3.3e-24 115.9 72 76.4
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 7.6e-21 104.8 185 37.8
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 2.9e-20 102.8 191 33.0
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 3.0e-17 92.8 96 51.0
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 2.5e-16 89.7 59 59.3
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 9.6e-08 61.2 187 27.3
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 1.3e-07 60.8 172 27.3
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 1.6e-07 60.5 172 27.3
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 2.1e-07 60.1 172 27.3
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 2.1e-07 60.1 185 28.1
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 2.8e-07 59.7 178 25.8
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 2.8e-07 59.7 176 25.6
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 6.2e-07 58.5 176 25.6
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 6.2e-07 58.5 185 27.0
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 8.1e-07 58.2 189 25.4
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 8.1e-07 58.2 176 26.7
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 1.1e-06 57.8 178 25.3
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 1.1e-06 57.8 178 25.3
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 1.1e-06 57.8 176 26.1
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.1e-06 57.8 176 26.7
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.1e-06 57.8 176 26.7
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 1.1e-06 57.8 176 26.1
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 1.1e-06 57.8 178 27.0
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 1.1e-06 57.8 186 26.3
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.4e-06 57.4 186 25.8
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 1.4e-06 57.4 174 26.4
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 2.4e-06 56.6 183 25.1
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 2.4e-06 56.6 178 25.3
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 3.1e-06 56.2 176 25.6
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 3.1e-06 56.2 173 25.4
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 3.1e-06 56.2 184 27.2
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 3.1e-06 56.2 173 25.4
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 4.0e-06 55.8 194 27.8
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 4.0e-06 55.8 187 24.6
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 5.3e-06 55.5 177 26.6
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 5.3e-06 55.5 192 26.0
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 5.3e-06 55.5 176 26.1
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 6.9e-06 55.1 176 25.6
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 6.9e-06 55.1 185 25.4
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 6.9e-06 55.1 156 29.5
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 6.9e-06 55.1 177 26.6
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 6.9e-06 55.1 190 26.8
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 6.9e-06 55.1 195 25.6
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 9.0e-06 54.7 176 27.3
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 9.0e-06 54.7 180 24.4
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 9.0e-06 54.7 193 27.5
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 9.0e-06 54.7 193 27.5
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 9.0e-06 54.7 193 27.5
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 9.0e-06 54.7 193 27.5
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 9.0e-06 54.7 151 27.8
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 9.0e-06 54.7 183 24.6


User provided reference genes

Program Settings