Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 2.7e-91 338.6 163 100.0
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 2.7e-91 338.6 163 100.0
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 1.1e-84 316.6 163 89.6
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.7e-83 312.0 163 88.3
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.9e-81 305.8 163 87.7
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 2.5e-81 305.4 162 86.4
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 2.5e-81 305.4 163 87.1
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 4.3e-81 304.7 163 87.1
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 9.6e-81 303.5 163 84.0
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 9.6e-81 303.5 163 87.1
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 1.6e-80 302.8 163 87.1
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 2.1e-80 302.4 163 84.7
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 6.2e-80 300.8 163 84.0
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 3.1e-79 298.5 163 82.8
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 5.3e-79 297.7 163 84.7
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 2.6e-78 295.4 163 84.7
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 3.4e-78 295.0 163 84.0
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 1.0e-77 293.5 163 82.2
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 4.9e-77 291.2 162 80.9
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 8.4e-77 290.4 162 80.9
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 1.1e-76 290.0 163 82.2
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.4e-76 289.7 151 85.4
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 2.5e-76 288.9 149 87.9
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 3.2e-76 288.5 154 86.4
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 4.2e-76 288.1 151 85.4
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 4.2e-76 288.1 159 81.8
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 5.5e-76 287.7 163 79.1
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 5.5e-76 287.7 154 85.7
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 1.6e-75 286.2 153 85.0
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 2.7e-75 285.4 163 81.6
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 1.3e-74 283.1 163 80.4
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.3e-74 283.1 154 83.8
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.3e-74 283.1 149 87.2
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.3e-74 283.1 149 87.2
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 1.8e-74 282.7 148 89.2
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 1.8e-74 282.7 163 81.0
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 1.8e-74 282.7 163 76.7
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 3.9e-74 281.6 163 79.1
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 3.9e-74 281.6 163 80.4
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 1.5e-73 279.6 163 77.9
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.5e-73 279.6 163 80.4
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 3.3e-73 278.5 163 78.5
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 4.3e-73 278.1 163 78.5
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 7.4e-73 277.3 154 81.2
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 2.8e-72 275.4 163 78.5
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 2.8e-72 275.4 163 76.7
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 3.7e-72 275.0 163 79.8
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 4.8e-72 274.6 163 77.9
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 4.8e-72 274.6 163 76.7
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 2.4e-71 272.3 163 74.2
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 4.1e-71 271.6 163 73.6
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 5.3e-71 271.2 163 75.5
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 1.5e-70 269.6 163 73.6
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 2.0e-70 269.2 163 73.0
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 2.0e-70 269.2 163 73.0
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 2.6e-70 268.9 163 73.6
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 2.6e-70 268.9 152 82.2
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 4.5e-70 268.1 146 84.9
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 1.0e-69 266.9 163 78.5
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 1.3e-69 266.5 163 72.4
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 1.3e-69 266.5 163 71.8
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 1.3e-69 266.5 151 79.5
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 1.7e-69 266.2 163 72.4
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 2.2e-69 265.8 163 71.2
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 2.9e-69 265.4 163 76.1
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 3.8e-69 265.0 163 76.1
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 3.8e-69 265.0 163 75.5
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 3.8e-69 265.0 163 74.2
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 5.0e-69 264.6 163 71.8
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 2.5e-68 262.3 163 74.8
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 3.2e-68 261.9 165 75.2
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 3.2e-68 261.9 165 75.2
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 4.2e-68 261.5 165 75.2
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 5.5e-68 261.2 165 75.2
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 5.5e-68 261.2 162 71.6
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 7.2e-68 260.8 163 74.8
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 1.6e-67 259.6 165 74.5
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 3.6e-67 258.5 149 80.5
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.4e-66 256.5 149 79.2
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.3e-66 255.8 144 81.2
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 2.3e-66 255.8 153 73.9
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 2.3e-66 255.8 153 73.9
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 2.3e-66 255.8 157 73.2
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.3e-66 255.8 152 77.0
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 5.1e-66 254.6 139 82.7
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 4.3e-65 251.5 146 80.1
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 4.3e-65 251.5 153 72.5
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 4.3e-65 251.5 149 77.2
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 7.4e-65 250.8 152 72.4
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 9.7e-65 250.4 144 79.9
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 2.2e-64 249.2 164 70.7
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 4.8e-64 248.1 165 70.9
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 1.1e-63 246.9 165 70.3
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 2.4e-63 245.7 144 75.7
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 2.4e-63 245.7 144 75.7
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 6.9e-63 244.2 141 78.0
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 1.5e-62 243.0 178 65.7
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 2.6e-62 242.3 165 68.5
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 5.9e-62 241.1 163 68.1
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 1.0e-61 240.4 165 69.7
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 1.7e-61 239.6 164 68.3
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 2.2e-61 239.2 163 69.9
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 3.8e-61 238.4 165 67.9
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 5.0e-61 238.0 165 67.9
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 8.5e-61 237.3 137 77.4
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.4e-60 236.5 139 78.4
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 7.2e-60 234.2 160 68.8
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 2.7e-59 232.3 144 72.2
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 6.1e-59 231.1 162 67.3
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 1.8e-58 229.6 165 66.7
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.9e-58 228.4 124 84.7
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 8.8e-58 227.3 163 71.8
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 2.0e-57 226.1 136 72.8
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 1.4e-55 219.9 158 63.3
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 1.6e-51 206.5 163 60.7
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.8e-50 203.0 163 63.8
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 7.0e-47 191.0 163 53.4
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 3.5e-46 188.7 163 52.8
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 8.0e-43 177.6 163 57.1
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.0e-42 177.2 123 67.5
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.4e-41 172.2 128 64.1
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.4e-39 166.8 150 55.3
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 4.1e-39 165.2 123 61.8
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 4.1e-39 165.2 164 50.6
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 1.2e-38 163.7 103 71.8
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 2.0e-38 162.9 164 50.6
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 4.5e-38 161.8 176 52.8
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 7.7e-38 161.0 176 52.8
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 3.8e-37 158.7 163 50.3
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 6.5e-37 157.9 97 73.2
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 1.0e-34 150.6 123 58.5
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.4e-34 150.2 164 48.2
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 4.0e-34 148.7 165 44.8
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 3.4e-33 145.6 137 57.7
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 2.3e-29 132.9 90 68.9
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 1.5e-25 120.2 139 43.9
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 2.0e-25 119.8 67 85.1
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 2.9e-16 89.4 62 66.1
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 6.6e-13 78.2 53 66.0
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 5.6e-12 75.1 120 35.8
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 1.6e-11 73.6 62 61.3
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.8e-10 70.1 58 56.9
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 2.0e-09 66.6 48 58.3
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 2.2e-08 63.2 43 69.8
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 2.1e-06 56.6 46 52.2


User provided reference genes

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