Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28571 Davidia involucrata HOM05D002915 ORTHO05D003004 3.0e-96 355.1 176 100.0
Dinv28573 Davidia involucrata HOM05D002915 ORTHO05D003004 1.9e-45 186.4 114 87.7
Migut.H01190 Erythranthe guttata HOM05D002915 ORTHO05D003004 2.4e-32 142.9 170 44.7
Oeu033490.1 Olea europaea HOM05D002915 ORTHO05D003004 1.5e-31 140.2 211 38.4
Migut.F00476 Erythranthe guttata HOM05D002915 ORTHO05D003004 3.4e-31 139.0 202 40.1
Migut.C00066 Erythranthe guttata HOM05D002915 ORTHO05D003004 4.4e-31 138.7 202 40.6
Migut.H01084 Erythranthe guttata HOM05D002915 ORTHO05D003004 1.4e-29 133.7 202 38.6
Cc00_g21400 Coffea canephora HOM05D002915 ORTHO05D003004 1.9e-29 133.3 192 40.6
Migut.C00063 Erythranthe guttata HOM05D002915 ORTHO05D003004 2.4e-29 132.9 202 40.1
TAR629G0865 Trochodendron aralioides HOM05D002915 ORTHO05D003004 1.7e-27 126.7 195 40.5
PGSC0003DMG400021580 Solanum tuberosum HOM05D002915 ORTHO05D003004 5.1e-27 125.2 200 37.5
TAR629G0058 Trochodendron aralioides HOM05D002915 ORTHO05D003004 1.5e-26 123.6 179 43.0
Cc00_g09710 Coffea canephora HOM05D002915 ORTHO05D003004 2.5e-26 122.9 163 46.6
Cc05_g03590 Coffea canephora HOM05D002915 ORTHO05D003004 2.5e-26 122.9 197 41.6
Cc02_g04260 Coffea canephora HOM05D002915 ORTHO05D003004 7.3e-26 121.3 186 38.7
PGSC0003DMG400037269 Solanum tuberosum HOM05D002915 ORTHO05D003004 2.8e-25 119.4 199 35.7
CSS0045033 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 4.7e-25 118.6 192 37.0
Cc03_g08730 Coffea canephora HOM05D002915 ORTHO05D003004 6.2e-25 118.2 170 44.1
Cc08_g03020 Coffea canephora HOM05D002915 ORTHO05D003004 1.8e-24 116.7 189 38.1
DCAR_018111 Daucus carota HOM05D002915 ORTHO05D003004 3.1e-24 115.9 202 33.7
Hma1.2p1_0167F.1_g073810 Hydrangea macrophylla HOM05D002915 ORTHO05D003004 4.0e-24 115.5 198 36.9
CAN.G1143.27 Capsicum annuum HOM05D002915 ORTHO05D003004 7.6e-23 111.3 198 33.8
TAR629G2135 Trochodendron aralioides HOM05D002915 ORTHO05D003004 2.2e-22 109.8 187 37.4
Gohir.A11G040100 Gossypium hirsutum HOM05D002915 ORTHO05D003004 6.4e-22 108.2 197 35.5
Haze_24934 Corylus avellana HOM05D002915 ORTHO05D003004 8.4e-22 107.8 174 35.1
Cfa002665 Carpinus fangiana HOM05D002915 ORTHO05D003004 1.1e-21 107.5 174 35.1
vmacro16134 Vaccinium macrocarpon HOM05D002915 ORTHO05D003004 1.1e-21 107.5 212 33.0
Potri.001G321400 Populus trichocarpa HOM05D002915 ORTHO05D003004 1.4e-21 107.1 164 37.2
Hund03449 Selenicereus undatus HOM05D002915 ORTHO05D003004 1.9e-21 106.7 199 35.2
QL03p054762 Quercus lobata HOM05D002915 ORTHO05D003004 2.4e-21 106.3 197 37.1
Potri.013G008800 Populus trichocarpa HOM05D002915 ORTHO05D003004 5.4e-21 105.1 159 35.8
SGA_v2.0_scaffold169G38697 Striga asiatica HOM05D002915 ORTHO05D003004 1.6e-20 103.6 195 34.9
Sabra13G0007400 Salix brachista HOM05D002915 ORTHO05D003004 4.6e-20 102.1 163 35.6
Rhsim12G0105400 Rhododendron simsii HOM05D002915 ORTHO05D003004 6.0e-20 101.7 214 36.4
Gorai.007G046700 Gossypium raimondii HOM05D002915 ORTHO05D003004 1.0e-19 100.9 191 34.6
Rhsim02G0221300 Rhododendron simsii HOM05D002915 ORTHO05D003004 1.0e-19 100.9 215 35.3
Migut.F00575 Erythranthe guttata HOM05D002915 ORTHO05D003004 3.0e-19 99.4 118 42.4
Rhsim12G0105300 Rhododendron simsii HOM05D002915 ORTHO05D003004 3.0e-19 99.4 214 35.0
DCAR_016182 Daucus carota HOM05D002915 ORTHO05D003004 3.9e-19 99.0 182 30.8
Rhsim13G0213700 Rhododendron simsii HOM05D002915 ORTHO05D003004 5.1e-19 98.6 215 34.4
SGA_v2.0_scaffold51G18778 Striga asiatica HOM05D002915 ORTHO05D003004 5.1e-19 98.6 197 33.5
Gohir.D11G043350 Gossypium hirsutum HOM05D002915 ORTHO05D003004 8.7e-19 97.8 191 35.1
Sopen06g010910 Solanum pennellii HOM05D000025 ORTHO05D000136 1.9e-18 96.7 169 34.9
CiPaw.05G115500 Carya illinoinensis HOM05D002915 ORTHO05D003004 2.5e-18 96.3 187 37.4
CiPaw.05G115300 Carya illinoinensis HOM05D002915 ORTHO05D003004 4.3e-18 95.5 187 37.4
CiPaw.05G115400 Carya illinoinensis HOM05D002915 ORTHO05D003004 4.3e-18 95.5 187 37.4
CiPaw.06G099700 Carya illinoinensis HOM05D002915 ORTHO05D003004 7.3e-18 94.7 184 34.2
DCAR_018110 Daucus carota HOM05D002915 ORTHO05D003004 7.3e-18 94.7 194 32.5
Manes.12G014800 Manihot esculenta HOM05D002915 ORTHO05D003004 7.3e-18 94.7 208 30.8
Prupe.1G137300 Prunus persica HOM05D002915 ORTHO05D003004 9.6e-18 94.4 203 30.5
Manes.12G023850 Manihot esculenta HOM05D002915 ORTHO05D003004 2.1e-17 93.2 205 30.7
CSS0048418 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 1.8e-16 90.1 105 45.7
Nn1g09544 Nelumbo nucifera HOM05D002915 ORTHO05D003004 1.8e-16 90.1 174 32.8
Dinv14798 Davidia involucrata HOM05D002915 ORTHO05D003004 2.4e-16 89.7 189 33.3
HanXRQChr08g0207481 Helianthus annuus HOM05D002915 ORTHO05D003004 2.4e-16 89.7 210 28.6
MD16G1169500 Malus domestica HOM05D002915 ORTHO05D003004 2.4e-16 89.7 173 34.7
Manes.13G015600 Manihot esculenta HOM05D002915 ORTHO05D003004 2.4e-16 89.7 165 33.9
MD16G1170100 Malus domestica HOM05D002915 ORTHO05D003004 4.0e-16 89.0 173 32.4
Thecc.03G155800 Theobroma cacao HOM05D002915 ORTHO05D003004 4.0e-16 89.0 120 40.0
Ciclev10006753m.g Citrus clementina HOM05D002915 ORTHO05D003004 9.0e-16 87.8 176 32.4
PSO339G6727 Papaver somniferum HOM05D002915 ORTHO05D003004 1.5e-15 87.0 172 32.6
PSO384G2811 Papaver somniferum HOM05D002915 ORTHO05D003004 2.0e-15 86.7 173 32.9
PSO384G3355 Papaver somniferum HOM05D002915 ORTHO05D003004 2.0e-15 86.7 173 32.9
Lsat_1_v5_gn_8_150181 Lactuca sativa HOM05D000825 ORTHO05D003684 2.6e-15 86.3 140 35.7
PSO832G1590 Papaver somniferum HOM05D002915 ORTHO05D003004 2.6e-15 86.3 203 31.0
Thecc.09G039200 Theobroma cacao HOM05D002915 ORTHO05D003004 4.5e-15 85.5 170 32.9
Manes.11G084185 Manihot esculenta HOM05D002915 ORTHO05D003004 5.8e-15 85.1 205 29.8
Thecc.03G155900 Theobroma cacao HOM05D002915 ORTHO05D003004 5.8e-15 85.1 99 47.5
Gohir.A05G169100 Gossypium hirsutum HOM05D002915 ORTHO05D003004 2.9e-14 82.8 168 29.2
TWI09G1418 Tripterygium wilfordii HOM05D002915 ORTHO05D003004 2.9e-14 82.8 168 33.9
PGSC0003DMG400043877 Solanum tuberosum HOM05D002915 ORTHO05D003004 4.9e-14 82.0 190 31.1
PGSC0003DMG400043813 Solanum tuberosum HOM05D002915 ORTHO05D003004 6.4e-14 81.6 166 29.5
Actinidia25760 Actinidia chinensis HOM05D002915 ORTHO05D003004 1.1e-13 80.9 190 30.0
Duzib150G0710 Durio zibethinus HOM05D002915 ORTHO05D003004 1.9e-13 80.1 173 28.9
RcHm_v2.0_Chr4g0422141 Rosa chinensis HOM05D002915 ORTHO05D003004 1.9e-13 80.1 203 27.1
Atru.chr11.2244 Acer truncatum HOM05D002915 ORTHO05D003004 2.4e-13 79.7 196 30.1
Atru.chr11.2259 Acer truncatum HOM05D002915 ORTHO05D003004 2.4e-13 79.7 196 30.1
Aqoxy1G00479 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 2.4e-13 79.7 195 29.2
Gohir.D05G172300 Gossypium hirsutum HOM05D002915 ORTHO05D003004 2.4e-13 79.7 195 25.6
Atru.chr1.711 Acer truncatum HOM05D002915 ORTHO05D003004 3.2e-13 79.3 195 30.8
Gorai.009G177500 Gossypium raimondii HOM05D002915 ORTHO05D003004 4.2e-13 79.0 195 25.6
Atru.chr11.2288 Acer truncatum HOM05D002915 ORTHO05D003004 5.4e-13 78.6 195 30.8
CANSAT64G2697 Cannabis sativa HOM05D002915 ORTHO05D003004 1.2e-12 77.4 199 30.2
Gohir.D09G108500 Gossypium hirsutum HOM05D002915 ORTHO05D003004 1.6e-12 77.0 195 26.7
Lj6A821T72 Lonicera japonica HOM05D002915 ORTHO05D003004 1.6e-12 77.0 187 26.7
Atru.chr1.712 Acer truncatum HOM05D002915 ORTHO05D003004 2.1e-12 76.6 195 30.8
Peaxi162Scf00072g00109 Petunia axillaris HOM05D000002 ORTHO05D003004 2.1e-12 76.6 96 37.5
PGR142G3351 Punica granatum HOM05D002915 ORTHO05D003004 2.7e-12 76.3 194 28.9
Sopen04g019620 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-12 76.3 198 28.3
Duzib168G1329 Durio zibethinus HOM05D002915 ORTHO05D003004 3.5e-12 75.9 167 28.1
Duzib168G1942 Durio zibethinus HOM05D002915 ORTHO05D003004 3.5e-12 75.9 167 27.5
THA.LOC104810144 Tarenaya hassleriana HOM05D002915 ORTHO05D003004 3.5e-12 75.9 172 33.1
Gohir.D09G108400 Gossypium hirsutum HOM05D002915 ORTHO05D003004 4.6e-12 75.5 195 26.7
Lj6A815T43 Lonicera japonica HOM05D002915 ORTHO05D003004 4.6e-12 75.5 172 27.3
Thecc.06G218700 Theobroma cacao HOM05D002915 ORTHO05D003004 7.9e-12 74.7 167 28.1
CsaV3_1G004340 Cucumis sativus L. HOM05D002915 ORTHO05D003004 1.0e-11 74.3 167 29.9
Lj4g0008862 Lotus japonicus HOM05D002915 ORTHO05D003004 1.0e-11 74.3 204 25.5
Lalb_Chr13g0303601 Lupinus albus HOM05D002915 ORTHO05D003004 1.0e-11 74.3 178 27.0
Gorai.006G126100 Gossypium raimondii HOM05D002915 ORTHO05D003004 1.3e-11 73.9 193 25.9
Lj4g0002182 Lotus japonicus HOM05D002915 ORTHO05D003004 1.3e-11 73.9 178 32.0
CsaV3_5G029620 Cucumis sativus L. HOM05D002915 ORTHO05D003004 3.9e-11 72.4 190 28.4
Gorai.006G126200 Gossypium raimondii HOM05D002915 ORTHO05D003004 6.7e-11 71.6 195 26.2
FAN19G1392 Fragaria x ananassa HOM05D002915 ORTHO05D003004 8.7e-11 71.2 208 25.5
Aqoxy4G02244 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 1.1e-10 70.9 184 26.6
ClCG11G013100 Citrullus lanatus HOM05D002915 ORTHO05D003004 1.5e-10 70.5 201 28.4
Ah.15g098230 Amaranthus hybridus HOM05D002915 ORTHO05D003004 1.9e-10 70.1 196 24.5
MELO3C011803.2 Cucumis melo HOM05D002915 ORTHO05D003004 1.9e-10 70.1 217 28.1
ECA233G1149 Erigeron canadensis HOM05D000825 ORTHO05D003004 1.9e-10 70.1 119 35.3
Lj4g0025234 Lotus japonicus HOM05D002915 ORTHO05D003004 1.9e-10 70.1 191 30.9
Cc11_g03110 Coffea canephora HOM05D002915 ORTHO05D003004 2.5e-10 69.7 114 37.7
PGSC0003DMG400043755 Solanum tuberosum HOM05D002915 ORTHO05D003004 2.5e-10 69.7 97 39.2
Cpa.g.sc3.322 Carica papaya HOM05D002915 ORTHO05D003004 3.3e-10 69.3 89 39.3
FAN17G1773 Fragaria x ananassa HOM05D002915 ORTHO05D003004 3.3e-10 69.3 173 27.2
MELO3C029741.2 Cucumis melo HOM05D002915 ORTHO05D003004 4.3e-10 68.9 201 28.4
Aqoxy1G01229 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 9.6e-10 67.8 192 28.6
COL.COLO4_36468 Corchorus olitorius HOM05D002915 ORTHO05D003004 9.6e-10 67.8 182 30.2
Lalb_Chr18g0050831 Lupinus albus HOM05D002915 ORTHO05D003004 1.3e-09 67.4 186 31.2
Lj5g0020165 Lotus japonicus HOM05D002915 ORTHO05D003004 1.6e-09 67.0 179 29.6
FAN12G2317 Fragaria x ananassa HOM05D002915 ORTHO05D003004 2.8e-09 66.2 170 26.5
FAN26G0404 Fragaria x ananassa HOM05D002915 ORTHO05D003004 2.8e-09 66.2 208 25.0
Ciclev10033456m.g Citrus clementina HOM05D002915 ORTHO05D003004 6.2e-09 65.1 158 31.6
HanXRQChr05g0131161 Helianthus annuus HOM05D002915 ORTHO05D003004 6.2e-09 65.1 177 28.2
TPR.G3196 Trifolium pratense HOM05D002915 ORTHO05D003004 6.2e-09 65.1 206 25.2
TAR374G0847 Trochodendron aralioides HOM05D002915 ORTHO05D003004 6.2e-09 65.1 88 40.9
CSS0049349 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 8.1e-09 64.7 109 33.0
COL.COLO4_16089 Corchorus olitorius HOM05D002915 ORTHO05D003004 1.8e-08 63.5 127 29.1
Eucgr.H01273 Eucalyptus grandis HOM05D002915 ORTHO05D003004 2.4e-08 63.2 100 37.0
Lj3g0023229 Lotus japonicus HOM05D002915 ORTHO05D003004 2.4e-08 63.2 181 31.5
Lj5g0000576 Lotus japonicus HOM05D002915 ORTHO05D003004 2.4e-08 63.2 179 30.2
Lj4g0001673 Lotus japonicus HOM05D002915 ORTHO05D003004 3.1e-08 62.8 174 29.3
Lj1g0028201 Lotus japonicus HOM05D002915 ORTHO05D003004 4.0e-08 62.4 179 31.8
Carub.0002s2166 Capsella rubella HOM05D002915 ORTHO05D003004 5.3e-08 62.0 136 30.1
Psat4g025920 Pisum sativum HOM05D002915 ORTHO05D003004 6.9e-08 61.6 202 25.2
CAN.G853.27 Capsicum annuum HOM05D002915 ORTHO05D003004 9.0e-08 61.2 98 35.7
Medtr3g075360 Medicago truncatula HOM05D002915 ORTHO05D003004 9.0e-08 61.2 186 22.6
Glyma.07G247800 Glycine max HOM05D002915 ORTHO05D003004 1.2e-07 60.8 192 27.6
Psat0s1573g0120 Pisum sativum HOM05D002915 ORTHO05D003004 1.2e-07 60.8 179 29.1
Lalb_Chr10g0105601 Lupinus albus HOM05D002915 ORTHO05D003004 1.5e-07 60.5 172 30.2
Lj1g0003622 Lotus japonicus HOM05D002915 ORTHO05D003004 3.4e-07 59.3 179 27.9
Lj4g0014849 Lotus japonicus HOM05D002915 ORTHO05D003004 4.5e-07 58.9 175 27.4
Lj5g0016376 Lotus japonicus HOM05D002915 ORTHO05D003004 4.5e-07 58.9 181 29.3
TPR.G23884 Trifolium pratense HOM05D002915 ORTHO05D003004 4.5e-07 58.9 181 29.8
Lj1g0000366 Lotus japonicus HOM05D002915 ORTHO05D003004 5.8e-07 58.5 147 32.0
Eucgr.K00814 Eucalyptus grandis HOM05D002915 ORTHO05D003004 7.6e-07 58.2 108 32.4
FAN07G0523 Fragaria x ananassa HOM05D002915 ORTHO05D003004 7.6e-07 58.2 87 35.6
CARHR060200 Cardamine hirsuta HOM05D002915 ORTHO05D003004 9.9e-07 57.8 169 29.0
Ca_21504_v3 Cicer arietinum L. HOM05D002915 ORTHO05D003004 9.9e-07 57.8 172 26.2
Medtr4g119850 Medicago truncatula HOM05D002915 ORTHO05D003004 1.7e-06 57.0 206 22.3
Haze_14809 Corylus avellana HOM05D002915 ORTHO05D003004 2.2e-06 56.6 111 33.3
Lj3g0011377 Lotus japonicus HOM05D002915 ORTHO05D003004 2.2e-06 56.6 162 27.8
Phvul.L006943 Phaseolus vulgaris HOM05D002915 ORTHO05D003004 2.2e-06 56.6 197 26.4
AT1G67623 Arabidopsis thaliana HOM05D002915 ORTHO05D003004 3.8e-06 55.8 160 28.1
Lj2g0026934 Lotus japonicus HOM05D002915 ORTHO05D003004 3.8e-06 55.8 172 27.9
PSO782G5303 Papaver somniferum HOM05D002915 ORTHO05D003004 3.8e-06 55.8 139 30.2
SalBow8G4835 Salvia bowleyana HOM05D002915 ORTHO05D003004 3.8e-06 55.8 89 36.0
Thhalv10019573m.g Eutrema salsugineum HOM05D002915 ORTHO05D003004 8.4e-06 54.7 100 35.0
Lj4g0001937 Lotus japonicus HOM05D002915 ORTHO05D003004 8.4e-06 54.7 149 32.2
Lj4g0013622 Lotus japonicus HOM05D002915 ORTHO05D003004 8.4e-06 54.7 149 32.2
TWI09G0909 Tripterygium wilfordii HOM05D002915 ORTHO05D003004 8.4e-06 54.7 82 42.7
TWI09G1379 Tripterygium wilfordii HOM05D002915 ORTHO05D003004 8.4e-06 54.7 82 42.7


User provided reference genes

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