Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 6.0e-121 437.6 228 100.0
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 5.1e-72 275.0 164 89.0
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 4.3e-71 271.9 164 87.2
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 8.2e-70 267.7 161 89.4
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 4.5e-68 261.9 160 88.1
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 1.3e-67 260.4 159 86.8
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 1.1e-66 257.3 156 85.9
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.1e-66 257.3 156 87.8
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 5.5e-66 255.0 156 87.2
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 5.5e-66 255.0 162 85.2
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 9.4e-66 254.2 164 84.8
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 3.9e-64 248.8 156 84.6
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 6.7e-64 248.1 152 85.5
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 6.7e-64 248.1 156 82.1
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 6.7e-64 248.1 153 85.0
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 8.8e-64 247.7 159 81.8
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 2.0e-63 246.5 154 83.1
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.0e-63 246.5 159 83.0
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 2.6e-63 246.1 158 82.3
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 3.3e-63 245.7 152 84.9
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 5.7e-63 245.0 154 85.1
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 5.7e-63 245.0 158 83.5
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 5.7e-63 245.0 152 84.9
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 7.4e-63 244.6 161 80.1
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 9.7e-63 244.2 155 84.5
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 9.7e-63 244.2 155 84.5
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 9.7e-63 244.2 155 84.5
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 9.7e-63 244.2 158 83.5
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 1.3e-62 243.8 155 82.6
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 1.3e-62 243.8 159 80.5
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.7e-62 243.4 159 84.3
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 1.7e-62 243.4 159 80.5
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 1.7e-62 243.4 159 80.5
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 2.2e-62 243.0 202 68.8
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 2.8e-62 242.7 163 77.9
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 2.8e-62 242.7 155 83.2
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 2.8e-62 242.7 161 79.5
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 6.3e-62 241.5 151 84.8
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 6.3e-62 241.5 159 79.2
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 8.2e-62 241.1 155 82.6
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 8.2e-62 241.1 155 83.2
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 8.2e-62 241.1 158 81.6
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 8.2e-62 241.1 170 76.5
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 1.1e-61 240.7 155 81.9
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.4e-61 240.4 152 82.9
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.4e-61 240.4 151 83.4
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.8e-61 240.0 151 84.1
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 2.4e-61 239.6 166 76.5
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 3.1e-61 239.2 155 81.9
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 3.1e-61 239.2 151 84.8
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 5.3e-61 238.4 155 81.9
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 5.3e-61 238.4 156 81.4
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 5.3e-61 238.4 156 78.8
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 5.3e-61 238.4 156 78.8
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 5.3e-61 238.4 156 78.8
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 5.3e-61 238.4 156 82.1
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 5.3e-61 238.4 157 80.3
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 9.1e-61 237.7 151 84.1
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 1.2e-60 237.3 150 82.7
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 1.2e-60 237.3 150 82.7
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.2e-60 237.3 156 78.2
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 1.5e-60 236.9 166 76.5
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 2.0e-60 236.5 149 83.2
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 2.0e-60 236.5 165 77.0
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 2.0e-60 236.5 149 85.9
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 2.0e-60 236.5 151 84.1
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.6e-60 236.1 152 81.6
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 2.6e-60 236.1 151 81.5
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.5e-60 235.7 156 78.2
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 4.5e-60 235.3 155 80.6
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 4.5e-60 235.3 152 81.6
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 4.5e-60 235.3 158 78.5
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 7.7e-60 234.6 151 81.5
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 7.7e-60 234.6 157 76.4
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.0e-59 234.2 150 80.7
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 1.0e-59 234.2 160 76.9
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.2e-59 233.0 151 82.1
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 2.2e-59 233.0 156 79.5
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 2.9e-59 232.6 152 80.3
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 2.9e-59 232.6 166 75.9
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 5.0e-59 231.9 151 82.8
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 5.0e-59 231.9 154 79.9
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 6.5e-59 231.5 152 83.6
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 6.5e-59 231.5 151 79.5
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 8.5e-59 231.1 158 77.2
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 1.5e-58 230.3 157 77.1
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 1.9e-58 229.9 149 81.2
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 1.9e-58 229.9 152 80.3
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 3.2e-58 229.2 160 76.2
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 4.2e-58 228.8 156 76.9
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 5.5e-58 228.4 152 78.9
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 1.2e-57 227.3 154 79.2
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 1.6e-57 226.9 156 76.3
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 2.7e-57 226.1 154 78.6
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 2.7e-57 226.1 239 57.7
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 8.0e-57 224.6 151 76.2
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 2.3e-56 223.0 154 77.9
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 2.3e-56 223.0 157 77.7
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 3.9e-56 222.2 154 77.3
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 5.2e-56 221.9 155 73.5
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 5.2e-56 221.9 155 74.2
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.5e-55 220.3 189 64.6
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 3.3e-55 219.2 154 73.4
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 7.4e-55 218.0 164 72.0
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 3.7e-54 215.7 154 73.4
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 1.1e-53 214.2 129 88.4
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 1.4e-53 213.8 153 75.8
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 1.4e-53 213.8 131 87.0
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 2.0e-52 209.9 198 60.1
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.7e-49 199.5 208 55.8
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 1.0e-48 197.6 167 67.1
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 4.0e-48 195.7 150 72.7
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 4.0e-48 195.7 167 65.9
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 3.7e-46 189.1 145 66.2
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 7.0e-45 184.9 147 64.6
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 5.5e-42 175.3 118 79.7
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 4.7e-41 172.2 154 61.7
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 7.5e-39 164.9 137 62.0
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 1.7e-38 163.7 99 84.8
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 4.1e-37 159.1 126 69.0
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 3.8e-35 152.5 110 75.5
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.5e-34 150.6 95 82.1
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 9.5e-34 147.9 126 64.3
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 4.7e-33 145.6 119 68.9
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 7.5e-31 138.3 163 55.8
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 7.5e-23 111.7 74 78.4
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 1.1e-21 107.8 126 57.1
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 4.1e-21 105.9 108 57.4
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 7.0e-21 105.1 96 65.6
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 9.2e-21 104.8 123 46.3
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 1.2e-20 104.4 69 85.5
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.7e-19 100.5 83 67.5
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 8.6e-19 98.2 65 76.9
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 1.5e-18 97.4 104 59.6
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 7.3e-18 95.1 82 67.1
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.6e-17 94.0 66 71.2
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 4.4e-15 85.9 54 79.6
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 6.4e-14 82.0 57 71.9
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 1.7e-11 73.9 63 60.3
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 6.2e-09 65.5 36 83.3
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 1.4e-08 64.3 86 47.7
C09p41330 Brassica napus HOM05D005135 ORTHO05D005810 2.0e-07 60.5 76 52.6
BolC9t57008H Brassica oleracea HOM05D005135 ORTHO05D005810 2.0e-07 60.5 76 52.6
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 7.6e-07 58.5 52 55.8


User provided reference genes

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