Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28507 Davidia involucrata HOM05D003765 ORTHO05D004561 1.1e-104 383.3 188 100.0
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 7.3e-40 167.9 183 50.8
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 6.2e-39 164.9 157 57.3
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 7.5e-37 157.9 179 49.7
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 1.7e-36 156.8 165 56.4
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 6.4e-36 154.8 171 53.2
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 1.9e-35 153.3 182 48.4
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 5.4e-35 151.8 161 51.6
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 1.2e-34 150.6 189 49.2
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 1.0e-33 147.5 178 51.1
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 1.0e-33 147.5 170 51.2
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.1e-32 144.1 157 53.5
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 7.3e-32 141.4 171 48.0
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.2e-31 140.6 146 50.0
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 1.6e-31 140.2 174 52.3
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 3.6e-31 139.0 160 50.6
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 8.1e-31 137.9 161 50.9
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 1.4e-30 137.1 152 52.6
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 1.8e-30 136.7 175 46.3
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 2.4e-30 136.3 159 49.1
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 3.1e-30 136.0 169 45.0
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 4.0e-30 135.6 159 49.1
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 8.9e-30 134.4 181 47.0
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 1.2e-29 134.0 172 47.1
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 3.4e-29 132.5 170 45.3
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.7e-28 130.2 159 47.8
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 8.4e-28 127.9 190 43.2
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 1.1e-27 127.5 185 47.0
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 1.1e-27 127.5 111 55.0
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 1.4e-27 127.1 159 47.2
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.9e-27 126.7 181 47.0
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 1.9e-27 126.7 157 44.6
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 3.2e-27 125.9 181 46.4
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.2e-27 125.9 181 46.4
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.2e-27 125.9 181 46.4
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 4.1e-27 125.6 159 45.9
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 5.4e-27 125.2 180 46.7
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 7.1e-27 124.8 161 46.6
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 7.1e-27 124.8 202 41.1
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 7.1e-27 124.8 160 44.4
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 9.2e-27 124.4 180 46.1
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.6e-26 123.6 121 51.2
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 2.1e-26 123.2 167 47.3
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 2.7e-26 122.9 185 48.1
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 4.6e-26 122.1 147 49.0
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 4.6e-26 122.1 126 51.6
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.0e-25 120.9 118 51.7
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 1.0e-25 120.9 190 45.8
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.3e-25 120.6 118 52.5
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 1.7e-25 120.2 118 50.8
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 1.7e-25 120.2 134 48.5
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 1.7e-25 120.2 134 48.5
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 2.3e-25 119.8 121 47.9
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.3e-25 119.8 180 43.9
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 3.0e-25 119.4 121 52.1
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 3.9e-25 119.0 118 50.8
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 6.6e-25 118.2 129 48.8
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 6.6e-25 118.2 156 44.2
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 6.6e-25 118.2 164 46.3
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 2.5e-24 116.3 165 41.8
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 3.3e-24 115.9 145 44.8
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 3.3e-24 115.9 126 50.8
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 4.3e-24 115.5 179 41.3
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 4.3e-24 115.5 123 51.2
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 1.2e-23 114.0 151 44.4
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 1.6e-23 113.6 150 42.7
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 1.6e-23 113.6 126 50.0
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 2.8e-23 112.8 118 46.6
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 3.6e-23 112.5 153 41.8
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 4.7e-23 112.1 160 46.9
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 1.1e-22 110.9 119 47.9
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 1.4e-22 110.5 165 42.4
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 3.1e-22 109.4 163 42.9
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 2.0e-21 106.7 138 45.7
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 2.6e-21 106.3 112 45.5
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 3.4e-21 105.9 166 41.0
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 5.8e-21 105.1 184 38.6
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 4.9e-20 102.1 144 42.4
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 1.1e-19 100.9 161 40.4
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 1.9e-19 100.1 106 51.9
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 2.4e-19 99.8 157 42.7
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 1.2e-18 97.4 157 44.6
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 1.6e-18 97.1 133 44.4
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 1.6e-18 97.1 85 54.1
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 2.3e-17 93.2 177 38.4
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 6.6e-17 91.7 138 43.5
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 2.5e-16 89.7 155 40.6
Migut.F00398 Erythranthe guttata HOM05D003765 ORTHO05D004561 2.5e-16 89.7 160 39.4
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 3.3e-16 89.4 139 41.0
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 5.6e-16 88.6 159 36.5
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 1.1e-14 84.3 170 36.5
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 1.8e-14 83.6 177 33.9
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 3.1e-14 82.8 179 35.2
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 4.0e-14 82.4 155 38.7
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.5e-13 80.5 122 42.6
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 2.6e-13 79.7 108 42.6
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 3.4e-13 79.3 112 44.6
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 4.5e-13 79.0 153 35.3
ATR0661G439 Amborella trichopoda HOM05D003765 ORTHO05D004561 9.9e-13 77.8 111 36.9
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 9.9e-13 77.8 177 32.8
unitig_22.g5225 Utricularia gibba HOM05D003765 ORTHO05D004561 9.9e-13 77.8 123 43.1
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 2.2e-12 76.6 170 35.9
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 2.2e-12 76.6 180 33.3
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 4.9e-12 75.5 153 34.6
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 8.4e-12 74.7 173 35.8
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 2.4e-11 73.2 191 31.9
VMungo0464G2043 Vigna mungo HOM05D003765 ORTHO05D004561 2.4e-11 73.2 170 34.1
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 3.2e-11 72.8 116 38.8
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 2.1e-10 70.1 193 29.5
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 3.5e-10 69.3 133 35.3
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 3.5e-10 69.3 171 33.9
SEGI_17592 Sequoiadendron giganteum HOM05D003765 ORTHO05D004561 3.5e-10 69.3 126 31.7
Potri.010G211700 Populus trichocarpa HOM05D002036 ORTHO05D001913 6.0e-10 68.6 119 28.6
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 7.9e-10 68.2 135 40.0
HPP92_022139 Vanilla planifolia HOM05D003765 ORTHO05D004561 1.8e-09 67.0 75 48.0
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 3.0e-09 66.2 43 58.1
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 3.9e-09 65.9 143 34.3
HPP92_022144 Vanilla planifolia HOM05D003765 ORTHO05D004561 5.1e-09 65.5 76 48.7
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 8.7e-09 64.7 110 31.8
Sabra10G0163700 Salix brachista HOM05D002036 ORTHO05D001913 1.1e-08 64.3 123 27.6
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 9.6e-08 61.2 151 35.1
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.6e-07 60.5 114 38.6
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 2.1e-07 60.1 100 38.0
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 6.2e-07 58.5 162 30.9
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 1.1e-06 57.8 65 50.8
Glyma.02G095900 Glycine max HOM05D002036 ORTHO05D001913 1.4e-06 57.4 92 31.5
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 1.8e-06 57.0 143 32.9
COL.COLO4_10915 Corchorus olitorius HOM05D002036 ORTHO05D001913 4.0e-06 55.8 116 26.7
Glyma.18G285600 Glycine max HOM05D002036 ORTHO05D001913 4.0e-06 55.8 141 28.4
Prupe.2G227000 Prunus persica HOM05D002036 ORTHO05D001913 4.0e-06 55.8 132 26.5
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 4.0e-06 55.8 116 33.6
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 5.3e-06 55.5 106 34.9
Lj1g0001009 Lotus japonicus HOM05D002036 ORTHO05D001913 5.3e-06 55.5 94 31.9
Ciclev10027797m.g Citrus clementina HOM05D002515 ORTHO05D002722 6.9e-06 55.1 77 37.7
Lalb_Chr19g0131141 Lupinus albus HOM05D003765 ORTHO05D004561 6.9e-06 55.1 156 32.1
Psat3g186760 Pisum sativum HOM05D002036 ORTHO05D001913 6.9e-06 55.1 95 31.6
Sabra16G0144400 Salix brachista HOM05D002515 ORTHO05D002722 9.0e-06 54.7 79 34.2


User provided reference genes

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