Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28458 Davidia involucrata HOM05D003170 ORTHO05D003611 4.0e-67 258.1 139 100.0
Dinv35200 Davidia involucrata HOM05D003170 ORTHO05D003611 8.1e-36 154.1 151 65.6
CSS0039374 Camellia sinensis var. sinensis HOM05D003170 ORTHO05D003611 1.7e-33 146.4 151 64.9
TAR374G0603 Trochodendron aralioides HOM05D003170 ORTHO05D003611 2.9e-33 145.6 149 60.4
Lj4A278T48 Lonicera japonica HOM05D003170 ORTHO05D003611 3.7e-33 145.2 140 64.3
Lj4A278T49 Lonicera japonica HOM05D003170 ORTHO05D003611 6.4e-33 144.4 140 63.6
CSS0015678 Camellia sinensis var. sinensis HOM05D003170 ORTHO05D003611 1.1e-32 143.7 152 63.2
Nitab4.5_0000716g0230 Nicotiana tabacum HOM05D003170 ORTHO05D003611 1.4e-32 143.3 141 64.5
Peaxi162Scf00915g00018 Petunia axillaris HOM05D006363 ORTHO05D007920 4.1e-32 141.7 120 69.2
Prupe.2G292500 Prunus persica HOM05D003170 ORTHO05D003611 4.1e-32 141.7 148 60.1
CiPaw.04G065700 Carya illinoinensis HOM05D003170 ORTHO05D003611 7.1e-32 141.0 154 55.8
CiPaw.03G104800 Carya illinoinensis HOM05D003170 ORTHO05D003611 1.2e-31 140.2 153 56.9
Nitab4.5_0001508g0020 Nicotiana tabacum HOM05D003170 ORTHO05D003611 3.5e-31 138.7 136 64.7
GSVIVG01010550001 Vitis vinifera HOM05D003170 ORTHO05D003611 3.5e-31 138.7 139 57.6
PGSC0003DMG400014326 Solanum tuberosum HOM05D003170 ORTHO05D003611 1.0e-30 137.1 140 60.0
PGR042G1969 Punica granatum HOM05D003170 ORTHO05D003611 1.3e-30 136.7 149 60.4
Actinidia32873 Actinidia chinensis HOM05D003170 ORTHO05D003611 1.7e-30 136.3 150 61.3
CSS0022669 Camellia sinensis var. sinensis HOM05D003170 ORTHO05D003611 3.0e-30 135.6 150 60.0
CSS0042797 Camellia sinensis var. sinensis HOM05D003170 ORTHO05D003611 8.6e-30 134.0 150 59.3
CAN.G1704.1 Capsicum annuum HOM05D003170 ORTHO05D003611 1.9e-29 132.9 139 59.0
Haze_13733 Corylus avellana HOM05D003170 ORTHO05D003611 2.5e-29 132.5 153 56.9
DCAR_018189 Daucus carota HOM05D003170 ORTHO05D003611 2.1e-28 129.4 105 70.5
Thecc.03G174600 Theobroma cacao HOM05D003170 ORTHO05D003611 2.8e-28 129.0 144 58.3
MSTRG.8749 Avicennia marina HOM05D003170 ORTHO05D003611 3.6e-28 128.6 149 56.4
Hma1.2p1_2094F.1_g313950 Hydrangea macrophylla HOM05D003170 ORTHO05D003611 3.6e-28 128.6 143 60.8
ClCG01G005500 Citrullus lanatus HOM05D003170 ORTHO05D008719 6.2e-28 127.9 144 55.6
Aqoxy7G00394 Aquilegia oxysepala HOM05D003170 ORTHO05D003611 8.1e-28 127.5 142 58.5
Sopen03g004800 Solanum pennellii HOM05D003170 ORTHO05D003611 1.4e-27 126.7 140 59.3
Hund04727 Selenicereus undatus HOM05D003170 ORTHO05D003611 2.3e-27 125.9 149 57.0
Manes.14G027300 Manihot esculenta HOM05D003170 ORTHO05D003611 3.1e-27 125.6 151 57.0
Nitab4.5_0014916g0010 Nicotiana tabacum HOM05D003170 ORTHO05D003611 6.8e-27 124.4 117 64.1
MELO3C005380.2 Cucumis melo HOM05D003170 ORTHO05D003611 1.5e-26 123.2 141 53.9
TAR629G1853 Trochodendron aralioides HOM05D003170 ORTHO05D003611 2.0e-26 122.9 151 53.6
Solyc03g025980.3 Solanum lycopersicum HOM05D003170 ORTHO05D003611 2.6e-26 122.5 140 57.9
Nn6g34195 Nelumbo nucifera HOM05D003170 ORTHO05D003611 4.4e-26 121.7 129 59.7
Cc02_g03170 Coffea canephora HOM05D003170 ORTHO05D003611 5.8e-26 121.3 143 60.1
Eucgr.K00241 Eucalyptus grandis HOM05D003170 ORTHO05D003611 5.8e-26 121.3 142 54.9
Hma1.2p1_0270F.1_g108200 Hydrangea macrophylla HOM05D003170 ORTHO05D003611 5.8e-26 121.3 134 57.5
Oeu021775.1 Olea europaea HOM05D003170 ORTHO05D003611 5.8e-26 121.3 143 56.6
MD07G1266900 Malus domestica HOM05D003170 ORTHO05D003611 7.6e-26 120.9 150 56.7
CsaV3_5G005730 Cucumis sativus L. HOM05D003170 ORTHO05D003611 9.9e-26 120.6 108 63.0
Duzib205G1559 Durio zibethinus HOM05D003170 ORTHO05D003611 2.9e-25 119.0 143 55.2
Rhsim03G0179100 Rhododendron simsii HOM05D003170 ORTHO05D003611 2.9e-25 119.0 103 68.9
Migut.F00355 Erythranthe guttata HOM05D003170 ORTHO05D003611 3.7e-25 118.6 143 55.2
Duzib084G1425 Durio zibethinus HOM05D003170 ORTHO05D003611 4.9e-25 118.2 139 54.0
Nitab4.5_0001600g0020 Nicotiana tabacum HOM05D003170 ORTHO05D003611 4.9e-25 118.2 116 62.9
Actinidia31814 Actinidia chinensis HOM05D003170 ORTHO05D003611 1.1e-24 117.1 100 68.0
ATR0757G045 Amborella trichopoda HOM05D003170 ORTHO05D003611 1.1e-24 117.1 135 53.3
Ciclev10006977m.g Citrus clementina HOM05D003170 ORTHO05D003611 1.1e-24 117.1 151 49.0
DCAR_020240 Daucus carota HOM05D003170 ORTHO05D003611 1.9e-24 116.3 125 59.2
Hund11760 Selenicereus undatus HOM05D003170 ORTHO05D003611 1.9e-24 116.3 131 58.0
Hund28786 Selenicereus undatus HOM05D003170 ORTHO05D003611 1.9e-24 116.3 131 58.0
VMungo0464G1052 Vigna mungo HOM05D003170 ORTHO05D003611 3.2e-24 115.5 151 53.0
CAN.G166.6 Capsicum annuum HOM05D003170 ORTHO05D003611 4.1e-24 115.2 115 62.6
Potri.015G140500 Populus trichocarpa HOM05D003170 ORTHO05D003611 4.1e-24 115.2 148 58.1
TWI23G0489 Tripterygium wilfordii HOM05D003170 ORTHO05D003611 4.1e-24 115.2 151 54.3
CANSAT21G1030 Cannabis sativa HOM05D003170 ORTHO05D003611 5.4e-24 114.8 114 62.3
AUR62021211 Chenopodium quinoa HOM05D003170 ORTHO05D003611 7.1e-24 114.4 141 56.0
Sc25g0000430 Simmondsia chinensis HOM05D003170 ORTHO05D003611 1.2e-23 113.6 139 56.8
Potri.012G138600 Populus trichocarpa HOM05D003170 ORTHO05D003611 2.1e-23 112.8 144 56.9
MSTRG.8449 Avicennia marina HOM05D003170 ORTHO05D003611 2.7e-23 112.5 149 52.3
Oeu061639.1 Olea europaea HOM05D003170 ORTHO05D003611 2.7e-23 112.5 143 55.2
TWI39G0473 Tripterygium wilfordii HOM05D003170 ORTHO05D003611 3.5e-23 112.1 143 55.2
MD01G1199100 Malus domestica HOM05D003170 ORTHO05D003611 6.0e-23 111.3 155 51.6
Nn1g01407 Nelumbo nucifera HOM05D003170 ORTHO05D003611 7.8e-23 110.9 122 55.7
Glyma.16G195400 Glycine max HOM05D003170 ORTHO05D003611 1.0e-22 110.5 151 51.0
Peaxi162Scf00132g01511 Petunia axillaris HOM05D003170 ORTHO05D003611 1.0e-22 110.5 117 59.0
Ah.08g214090 Amaranthus hybridus HOM05D003170 ORTHO05D003611 1.3e-22 110.2 144 52.1
CiPaw.16G095000 Carya illinoinensis HOM05D003170 ORTHO05D003611 2.3e-22 109.4 94 63.8
Os05g0301600 Oryza sativa ssp. japonica HOM05D003170 ORTHO05D003611 2.3e-22 109.4 109 56.9
EL10Ac3g05670 Beta vulgaris HOM05D003170 ORTHO05D003611 3.0e-22 109.0 143 55.2
Sabra15G0151100 Salix brachista HOM05D003170 ORTHO05D003611 3.0e-22 109.0 151 54.3
TWI14G0563 Tripterygium wilfordii HOM05D003170 ORTHO05D003611 5.1e-22 108.2 147 56.5
TAR375G0255 Trochodendron aralioides HOM05D003170 ORTHO05D003611 1.1e-21 107.1 148 51.4
Lj2g0008178 Lotus japonicus HOM05D003170 ORTHO05D003611 1.5e-21 106.7 152 51.3
Phvul.004G118600 Phaseolus vulgaris HOM05D003170 ORTHO05D003611 1.5e-21 106.7 151 48.3
Duzib068G0533 Durio zibethinus HOM05D003170 ORTHO05D003611 1.9e-21 106.3 142 52.1
Lalb_Chr19g0130961 Lupinus albus HOM05D003170 ORTHO05D003611 1.9e-21 106.3 151 51.0
MBI04_g04732_MAGBIO Magnolia biondii HOM05D003170 ORTHO05D003611 3.3e-21 105.5 118 53.4
PGR142G3131 Punica granatum HOM05D003170 ORTHO05D003611 7.3e-21 104.4 145 49.7
Actinidia03117 Actinidia chinensis HOM05D003170 ORTHO05D003611 9.6e-21 104.0 153 49.7
Sabra12G0104000 Salix brachista HOM05D003170 ORTHO05D003611 9.6e-21 104.0 144 53.5
Glyma.09G142100 Glycine max HOM05D003170 ORTHO05D003611 1.6e-20 103.2 148 50.7
HPP92_016063 Vanilla planifolia HOM05D003170 ORTHO05D003611 3.6e-20 102.1 139 51.1
Cpa.g.sc107.34 Carica papaya HOM05D003170 ORTHO05D003611 4.7e-20 101.7 141 51.1
Rhsim01G0180500 Rhododendron simsii HOM05D003170 ORTHO05D003611 6.2e-20 101.3 142 52.8
Gorai.006G047800 Gossypium raimondii HOM05D003170 ORTHO05D003611 1.4e-19 100.1 140 50.7
Lsat_1_v5_gn_0_29780 Lactuca sativa HOM05D003170 ORTHO05D003611 1.8e-19 99.8 144 51.4
Atru.chr1.481 Acer truncatum HOM05D003170 ORTHO05D003611 2.4e-19 99.4 148 50.0
Gohir.A08G100333 Gossypium hirsutum HOM05D003170 ORTHO05D003611 4.0e-19 98.6 140 50.0
PSO782G4582 Papaver somniferum HOM05D003170 ORTHO05D003611 5.2e-19 98.2 143 46.9
Zm00001eb304110 Zea mays HOM05D003170 ORTHO05D003611 5.2e-19 98.2 126 50.0
Gohir.D09G041500 Gossypium hirsutum HOM05D003170 ORTHO05D003611 6.8e-19 97.8 140 50.0
SGA_v2.0_scaffold10G05362 Striga asiatica HOM05D003170 ORTHO05D003611 1.2e-18 97.1 149 49.7
Solyc01g009610.3 Solanum lycopersicum HOM05D003170 ORTHO05D003611 1.5e-18 96.7 115 58.3
TPR.G10770 Trifolium pratense HOM05D003170 ORTHO05D003611 1.5e-18 96.7 152 47.4
Gohir.D08G111500 Gossypium hirsutum HOM05D003170 ORTHO05D003611 2.0e-18 96.3 140 49.3
AUR62016003 Chenopodium quinoa HOM05D003170 ORTHO05D003611 2.6e-18 95.9 144 50.0
arahy.Tifrunner.gnm1.ann1.UE8RN5 Arachis hypogaea HOM05D003170 ORTHO05D003611 4.4e-18 95.1 155 43.9
PGSC0003DMG400010855 Solanum tuberosum HOM05D003170 ORTHO05D003611 4.4e-18 95.1 129 55.0
vmacro06699 Vaccinium macrocarpon HOM05D003170 ORTHO05D003611 4.4e-18 95.1 144 52.1
Gorai.004G119500 Gossypium raimondii HOM05D003170 ORTHO05D003611 5.8e-18 94.7 140 48.6
Medtr0022s0300 Medicago truncatula HOM05D003170 ORTHO05D003611 1.3e-17 93.6 152 46.7
Sed0024024 Sechium edule HOM05D003170 ORTHO05D003611 1.7e-17 93.2 151 47.0
QL09p014578 Quercus lobata HOM05D003170 ORTHO05D003611 2.9e-17 92.4 138 49.3
SalBow2G0654 Salvia bowleyana HOM05D003170 ORTHO05D003611 4.9e-17 91.7 139 48.2
Sp7g23560 Schrenkiella parvula HOM05D003170 ORTHO05D003611 8.4e-17 90.9 126 50.0
Lsat_1_v5_gn_5_1720 Lactuca sativa HOM05D003170 ORTHO05D003611 1.4e-16 90.1 130 48.5
Lalb_Chr01g0009211 Lupinus albus HOM05D003170 ORTHO05D003611 1.4e-16 90.1 155 45.2
arahy.Tifrunner.gnm1.ann1.HMB1PX Arachis hypogaea HOM05D003170 ORTHO05D003611 1.9e-16 89.7 157 43.3
Ca_06615_v3 Cicer arietinum L. HOM05D003170 ORTHO05D003611 3.2e-16 89.0 154 45.5
THA.LOC104800259 Tarenaya hassleriana HOM05D003170 ORTHO05D003611 3.2e-16 89.0 134 49.3
unitig_0.g2485 Utricularia gibba HOM05D003170 ORTHO05D003611 5.4e-16 88.2 124 56.5
ECA233G1278 Erigeron canadensis HOM05D003170 ORTHO05D003611 1.2e-15 87.0 137 46.0
vmacro09842 Vaccinium macrocarpon HOM05D003170 ORTHO05D003611 2.1e-15 86.3 144 49.3
Sp6g14450 Schrenkiella parvula HOM05D003170 ORTHO05D003611 2.7e-15 85.9 107 55.1
Sed0003103 Sechium edule HOM05D003170 ORTHO05D003611 2.7e-15 85.9 121 48.8
Gohir.D09G175400 Gossypium hirsutum HOM05D003170 ORTHO05D003611 3.5e-15 85.5 126 49.2
Gorai.006G197500 Gossypium raimondii HOM05D003170 ORTHO05D003611 3.5e-15 85.5 126 49.2
arahy.Tifrunner.gnm1.ann1.XVLL42 Arachis hypogaea HOM05D003170 ORTHO05D003611 6.0e-15 84.7 120 47.5
Lsat_1_v5_gn_2_10280 Lactuca sativa HOM05D003170 ORTHO05D003611 1.0e-14 84.0 143 44.1
Carub.0007s1545 Capsella rubella HOM05D003170 ORTHO05D003611 3.9e-14 82.0 117 50.4
Psat0ss2830g0120 Pisum sativum HOM05D003170 ORTHO05D003611 3.9e-14 82.0 152 44.7
Thhalv10014782m.g Eutrema salsugineum HOM05D003170 ORTHO05D003611 5.1e-14 81.6 135 48.9
Lsat_1_v5_gn_8_6760 Lactuca sativa HOM05D003170 ORTHO05D003611 5.1e-14 81.6 113 50.4
Lsat_1_v5_gn_0_10360 Lactuca sativa HOM05D003170 ORTHO05D003611 6.6e-14 81.3 109 52.3
PSO478G4201 Papaver somniferum HOM05D003170 ORTHO05D003611 8.7e-14 80.9 178 37.6
FAN03G0230 Fragaria x ananassa HOM05D003170 ORTHO05D003611 1.1e-13 80.5 118 50.8
FAN03G3472 Fragaria x ananassa HOM05D003170 ORTHO05D003611 1.1e-13 80.5 118 50.8
Lsat_1_v5_gn_8_66160 Lactuca sativa HOM05D003170 ORTHO05D003611 1.9e-13 79.7 134 44.0
COL.COLO4_14288 Corchorus olitorius HOM05D006363 ORTHO05D007920 2.5e-13 79.3 136 44.1
FAN01G0494 Fragaria x ananassa HOM05D003170 ORTHO05D003611 2.5e-13 79.3 117 49.6
FAN10G1156 Fragaria x ananassa HOM05D003170 ORTHO05D003611 2.5e-13 79.3 118 50.8
arahy.Tifrunner.gnm1.ann1.NN7C7R Arachis hypogaea HOM05D003170 ORTHO05D003611 7.3e-13 77.8 114 47.4
CARHR232950 Cardamine hirsuta HOM05D003170 ORTHO05D003611 9.6e-13 77.4 145 44.8
CDE04G2040 Ceratophyllum demersum HOM05D003170 ORTHO05D003611 1.6e-12 76.6 133 45.1
FAN06G4027 Fragaria x ananassa HOM05D003170 ORTHO05D003611 2.1e-12 76.3 97 53.6
FAN06G4666 Fragaria x ananassa HOM05D003170 ORTHO05D003611 2.1e-12 76.3 97 53.6
HanXRQChr14g0462211 Helianthus annuus HOM05D003170 ORTHO05D003611 2.1e-12 76.3 116 47.4
ECA238G0732 Erigeron canadensis HOM05D003170 ORTHO05D003611 2.8e-12 75.9 118 48.3
A10p09900 Brassica napus HOM05D003170 ORTHO05D003611 4.8e-12 75.1 104 51.0
Lsat_1_v5_gn_8_63220 Lactuca sativa HOM05D003170 ORTHO05D003611 8.1e-12 74.3 107 48.6
Duzib205G0251 Durio zibethinus HOM05D003170 ORTHO05D003611 1.4e-11 73.6 130 39.2
HanXRQChr13g0395671 Helianthus annuus HOM05D003170 ORTHO05D003611 1.8e-11 73.2 119 45.4
Aa31LG3G8580 Aethionema arabicum HOM05D003170 ORTHO05D003611 2.4e-11 72.8 135 38.5
FvH4_7g29250 Fragaria vesca HOM05D003170 ORTHO05D003611 2.4e-11 72.8 119 48.7
CBR_g17955 Chara braunii HOM05D003170 ORTHO05D003611 3.1e-11 72.4 117 43.6
Lsat_1_v5_gn_2_66880 Lactuca sativa HOM05D003170 ORTHO05D003611 9.0e-11 70.9 95 48.4
Medtr1g100747 Medicago truncatula HOM05D003170 ORTHO05D003611 9.0e-11 70.9 125 43.2
Sopen01g005140 Solanum pennellii HOM05D003170 ORTHO05D003611 9.0e-11 70.9 61 70.5
Lsat_1_v5_gn_2_26501 Lactuca sativa HOM05D003170 ORTHO05D003611 1.5e-10 70.1 130 42.3
Ca_10782_v3 Cicer arietinum L. HOM05D006363 ORTHO05D007920 2.0e-10 69.7 106 46.2
Phvul.007G068200 Phaseolus vulgaris HOM05D003170 ORTHO05D003611 2.0e-10 69.7 110 42.7
TPR.G14320 Trifolium pratense HOM05D003170 ORTHO05D003611 2.0e-10 69.7 117 46.2
BcaB08g35572 Brassica carinata HOM05D003170 ORTHO05D003611 2.6e-10 69.3 102 47.1
Haze_08928 Corylus avellana HOM05D003170 ORTHO05D003611 2.6e-10 69.3 132 39.4
Thhalv10026333m.g Eutrema salsugineum HOM05D003170 ORTHO05D003611 3.4e-10 68.9 120 44.2
Migut.F01132 Erythranthe guttata HOM05D003170 ORTHO05D003611 4.4e-10 68.6 130 42.3
VMungo0720G1110 Vigna mungo HOM05D003170 ORTHO05D003611 5.8e-10 68.2 119 39.5
Glyma.20G157200 Glycine max HOM05D003170 ORTHO05D003611 9.9e-10 67.4 128 45.3
LjContig00238g0006434 Lotus japonicus HOM05D003170 ORTHO05D003611 1.3e-09 67.0 117 41.0
Gohir.A09G040930 Gossypium hirsutum HOM05D003170 ORTHO05D003611 2.9e-09 65.9 148 39.2
Ciclev10022533m.g Citrus clementina HOM05D003170 ORTHO05D003611 4.9e-09 65.1 132 43.2
RcHm_v2.0_Chr1g0377001 Rosa chinensis HOM05D003170 ORTHO05D003611 8.4e-09 64.3 115 46.1
BcaC06g32804 Brassica carinata HOM05D001175 ORTHO05D003020 1.4e-08 63.5 108 42.6
Lsat_1_v5_gn_9_89540 Lactuca sativa HOM05D003170 ORTHO05D003611 1.4e-08 63.5 128 38.3
AagrBONN_evm.TU.Sc2ySwM_117.458 Anthoceros agrestis HOM05D003170 ORTHO05D003611 1.9e-08 63.2 95 44.2
Glyma.10G237400 Glycine max HOM05D003170 ORTHO05D003611 2.4e-08 62.8 126 45.2
HPP92_017209 Vanilla planifolia HOM05D003170 ORTHO05D003611 3.2e-08 62.4 107 43.9
Lsat_1_v5_gn_2_133800 Lactuca sativa HOM05D003170 ORTHO05D003611 5.4e-08 61.6 144 38.9
CARHR265120 Cardamine hirsuta HOM05D003170 ORTHO05D003611 1.2e-07 60.5 111 40.5
QL12p017686 Quercus lobata HOM05D003170 ORTHO05D003611 1.6e-07 60.1 132 37.9
Carub.0008s1229 Capsella rubella HOM05D003170 ORTHO05D003611 4.6e-07 58.5 100 45.0
BcaB01g04192 Brassica carinata HOM05D003170 ORTHO05D003611 6.0e-07 58.2 141 41.1
BolC7t45924H Brassica oleracea HOM05D003170 ORTHO05D003611 6.0e-07 58.2 127 38.6
Lsat_1_v5_gn_6_103800 Lactuca sativa HOM05D003170 ORTHO05D003611 6.0e-07 58.2 82 51.2
EL10Ac7g15942 Beta vulgaris HOM05D002675 ORTHO05D003322 7.9e-07 57.8 128 35.9
A03p56070 Brassica napus HOM05D001061 ORTHO05D006729 7.9e-07 57.8 127 38.6
C07p54390 Brassica napus HOM05D001061 ORTHO05D006729 1.3e-06 57.0 127 37.8
AT5G52200 Arabidopsis thaliana HOM05D003170 ORTHO05D003611 2.3e-06 56.2 106 43.4
BcaB01g04191 Brassica carinata HOM05D003170 ORTHO05D003611 3.9e-06 55.5 105 43.8
ECA232G4709 Erigeron canadensis HOM05D003170 ORTHO05D003611 5.1e-06 55.1 63 58.7


User provided reference genes

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