Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28411 Davidia involucrata HOM05D000083 ORTHO05D001244 1.0e-84 316.6 153 100.0
Dinv35229 Davidia involucrata HOM05D000083 ORTHO05D001244 8.3e-26 120.9 72 86.1
Manes.06G150300 Manihot esculenta HOM05D000083 ORTHO05D001244 6.2e-21 104.8 70 72.9
Peaxi162Scf00057g00143 Petunia axillaris HOM05D000083 ORTHO05D001244 8.1e-21 104.4 67 80.6
TAR375G0134 Trochodendron aralioides HOM05D000083 ORTHO05D001244 1.1e-20 104.0 74 74.3
TAR374G1404 Trochodendron aralioides HOM05D000083 ORTHO05D001244 1.4e-20 103.6 75 74.7
Nitab4.5_0007038g0010 Nicotiana tabacum HOM05D000083 ORTHO05D001244 2.3e-20 102.8 67 79.1
Solyc03g025360.3 Solanum lycopersicum HOM05D000083 ORTHO05D001244 8.9e-20 100.9 67 79.1
Sopen03g004200 Solanum pennellii HOM05D000083 ORTHO05D001244 8.9e-20 100.9 67 79.1
PGSC0003DMG400015802 Solanum tuberosum HOM05D000083 ORTHO05D001244 2.0e-19 99.8 67 77.6
CSS0001512 Camellia sinensis var. sinensis HOM05D000083 ORTHO05D001244 3.4e-19 99.0 71 71.8
Ciclev10004272m.g Citrus clementina HOM05D000083 ORTHO05D001244 3.4e-19 99.0 68 69.1
Nn1g01553 Nelumbo nucifera HOM05D000083 ORTHO05D001244 4.4e-19 98.6 74 70.3
Actinidia20878 Actinidia chinensis HOM05D000083 ORTHO05D001244 5.8e-19 98.2 70 70.0
Rhsim03G0188600 Rhododendron simsii HOM05D000083 ORTHO05D001244 5.8e-19 98.2 71 70.4
CAN.G1005.16 Capsicum annuum HOM05D000083 ORTHO05D001244 7.5e-19 97.8 67 79.1
Cc02_g02620 Coffea canephora HOM05D000083 ORTHO05D001244 1.3e-18 97.1 71 73.2
Actinidia34137 Actinidia chinensis HOM05D000083 ORTHO05D001244 2.2e-18 96.3 71 70.4
Potri.015G146700 Populus trichocarpa HOM05D000083 ORTHO05D001244 8.3e-18 94.4 71 66.2
Prupe.2G298100 Prunus persica HOM05D000083 ORTHO05D001244 8.3e-18 94.4 70 67.1
vmacro06649 Vaccinium macrocarpon HOM05D000083 ORTHO05D001244 8.3e-18 94.4 71 67.6
Nn6g33396 Nelumbo nucifera HOM05D000083 ORTHO05D001244 1.1e-17 94.0 74 68.9
GSVIVG01028897001 Vitis vinifera HOM05D000083 ORTHO05D001244 1.1e-17 94.0 71 70.4
Sabra15G0155800 Salix brachista HOM05D000083 ORTHO05D001244 1.4e-17 93.6 70 65.7
TWI14G0599 Tripterygium wilfordii HOM05D000083 ORTHO05D001244 1.4e-17 93.6 71 64.8
Atru.chr1.403 Acer truncatum HOM05D000083 ORTHO05D001244 1.9e-17 93.2 71 66.2
Potri.012G143900 Populus trichocarpa HOM05D000083 ORTHO05D001244 1.9e-17 93.2 71 66.2
QL09p013684 Quercus lobata HOM05D000083 ORTHO05D001244 1.9e-17 93.2 71 69.0
Sabra12G0108000 Salix brachista HOM05D000083 ORTHO05D001244 1.9e-17 93.2 92 54.3
TAR629G0340 Trochodendron aralioides HOM05D000083 ORTHO05D001244 1.9e-17 93.2 70 71.4
Aqoxy7G00287 Aquilegia oxysepala HOM05D000083 ORTHO05D001244 2.4e-17 92.8 74 66.2
TWI23G0396 Tripterygium wilfordii HOM05D000083 ORTHO05D001244 5.4e-17 91.7 71 63.4
CAN.G527.4 Capsicum annuum HOM05D000083 ORTHO05D001244 9.2e-17 90.9 69 71.0
ClCG05G008180 Citrullus lanatus HOM05D000083 ORTHO05D001244 1.2e-16 90.5 71 63.4
PSO478G2066 Papaver somniferum HOM05D000083 ORTHO05D001244 1.2e-16 90.5 74 63.5
PGSC0003DMG400029929 Solanum tuberosum HOM05D000083 ORTHO05D001244 1.2e-16 90.5 70 71.4
PSO782G2869 Papaver somniferum HOM05D000083 ORTHO05D001244 1.6e-16 90.1 74 63.5
MELO3C006925.2 Cucumis melo HOM05D000083 ORTHO05D001244 2.1e-16 89.7 71 63.4
TWI39G0618 Tripterygium wilfordii HOM05D000083 ORTHO05D001244 2.1e-16 89.7 71 63.4
MD07G1274900 Malus domestica HOM05D000083 ORTHO05D001244 2.7e-16 89.4 70 64.3
MD01G1205500 Malus domestica HOM05D000083 ORTHO05D001244 4.6e-16 88.6 70 64.3
PGR042G3090 Punica granatum HOM05D000083 ORTHO05D001244 6.0e-16 88.2 71 62.0
CsaV3_3G017270 Cucumis sativus L. HOM05D000083 ORTHO05D001244 1.3e-15 87.0 71 59.2
MSTRG.8469 Avicennia marina HOM05D000083 ORTHO05D001244 2.3e-15 86.3 63 73.0
Oeu064568.1 Olea europaea HOM05D000083 ORTHO05D001244 3.0e-15 85.9 65 67.7
arahy.Tifrunner.gnm1.ann1.MY632X Arachis hypogaea HOM05D000083 ORTHO05D001244 5.1e-15 85.1 65 66.2
Dinv38930 Davidia involucrata HOM05D000083 ORTHO05D001244 5.1e-15 85.1 74 62.2
Thecc.03G180600 Theobroma cacao HOM05D000083 ORTHO05D001244 5.1e-15 85.1 69 62.3
MSTRG.80 Avicennia marina HOM05D000083 ORTHO05D001244 8.6e-15 84.3 61 70.5
FvH4_7g29920 Fragaria vesca HOM05D000083 ORTHO05D001244 1.1e-14 84.0 70 62.9
FAN06G2216 Fragaria x ananassa HOM05D000083 ORTHO05D001244 1.1e-14 84.0 70 62.9
FAN06G2601 Fragaria x ananassa HOM05D000083 ORTHO05D001244 1.1e-14 84.0 70 62.9
Solyc06g036080.4 Solanum lycopersicum HOM05D000083 ORTHO05D001244 1.1e-14 84.0 70 67.1
Sopen06g011840 Solanum pennellii HOM05D000083 ORTHO05D001244 1.1e-14 84.0 70 67.1
COL.COLO4_34485 Corchorus olitorius HOM05D000083 ORTHO05D001244 1.9e-14 83.2 79 54.4
FAN01G1318 Fragaria x ananassa HOM05D000083 ORTHO05D001244 1.9e-14 83.2 70 61.4
FAN03G0129 Fragaria x ananassa HOM05D000083 ORTHO05D001244 1.9e-14 83.2 70 61.4
FAN03G2104 Fragaria x ananassa HOM05D000083 ORTHO05D001244 1.9e-14 83.2 70 61.4
FAN10G1921 Fragaria x ananassa HOM05D000083 ORTHO05D001244 1.9e-14 83.2 70 61.4
FAN10G3631 Fragaria x ananassa HOM05D000083 ORTHO05D001244 1.9e-14 83.2 70 61.4
Nitab4.5_0001951g0020 Nicotiana tabacum HOM05D000083 ORTHO05D001244 1.9e-14 83.2 69 66.7
CANSAT21G2055 Cannabis sativa HOM05D000083 ORTHO05D001244 3.3e-14 82.4 69 63.8
RcHm_v2.0_Chr1g0377881 Rosa chinensis HOM05D000083 ORTHO05D001244 3.3e-14 82.4 70 62.9
Migut.F01099 Erythranthe guttata HOM05D000083 ORTHO05D001244 4.3e-14 82.0 64 71.9
Gohir.D09G043100 Gossypium hirsutum HOM05D000083 ORTHO05D001244 4.3e-14 82.0 66 62.1
Gorai.006G049500 Gossypium raimondii HOM05D000083 ORTHO05D001244 4.3e-14 82.0 66 62.1
VMungo0720G0764 Vigna mungo HOM05D000083 ORTHO05D001244 4.3e-14 82.0 65 64.6
Lj5g0016521 Lotus japonicus HOM05D000083 ORTHO05D001244 5.6e-14 81.6 65 64.6
Peaxi162Scf00848g00217 Petunia axillaris HOM05D000083 ORTHO05D001244 5.6e-14 81.6 69 65.2
CSS0035410 Camellia sinensis var. sinensis HOM05D000083 ORTHO05D001244 9.5e-14 80.9 72 62.5
Thecc.03G280700 Theobroma cacao HOM05D000083 ORTHO05D001244 1.6e-13 80.1 68 60.3
Duzib205G0193 Durio zibethinus HOM05D000083 ORTHO05D001244 2.1e-13 79.7 70 61.4
Duzib205G0793 Durio zibethinus HOM05D000083 ORTHO05D001244 2.1e-13 79.7 66 60.6
Gohir.A09G050200 Gossypium hirsutum HOM05D000083 ORTHO05D001244 2.1e-13 79.7 66 60.6
Medtr1g100250 Medicago truncatula HOM05D000083 ORTHO05D001244 2.1e-13 79.7 71 59.2
Duzib084G1449 Durio zibethinus HOM05D000083 ORTHO05D001244 2.8e-13 79.3 70 61.4
Atru.chr9.2170 Acer truncatum HOM05D000083 ORTHO05D001244 1.1e-12 77.4 73 57.5
Eucgr.A02762 Eucalyptus grandis HOM05D000083 ORTHO05D001244 1.1e-12 77.4 71 56.3
Glyma.09G135100 Glycine max HOM05D000083 ORTHO05D001244 1.1e-12 77.4 65 63.1
Hma1.2p1_2038F.1_g312090 Hydrangea macrophylla HOM05D000083 ORTHO05D001244 1.1e-12 77.4 72 59.7
Nitab4.5_0000080g0140 Nicotiana tabacum HOM05D000083 ORTHO05D001244 1.4e-12 77.0 69 62.3
Hund04771 Selenicereus undatus HOM05D000083 ORTHO05D001244 1.4e-12 77.0 71 56.3
GSVIVG01019739001 Vitis vinifera HOM05D000083 ORTHO05D001244 1.8e-12 76.6 74 56.8
COL.COLO4_28038 Corchorus olitorius HOM05D000083 ORTHO05D001244 2.3e-12 76.3 69 56.5
Sed0008256 Sechium edule HOM05D000083 ORTHO05D001244 2.3e-12 76.3 63 65.1
TPR.G27015 Trifolium pratense HOM05D000083 ORTHO05D001244 2.3e-12 76.3 71 57.7
MELO3C005481.2 Cucumis melo HOM05D000083 ORTHO05D001244 3.1e-12 75.9 65 63.1
CsaV3_5G004750 Cucumis sativus L. HOM05D000083 ORTHO05D001244 3.1e-12 75.9 65 63.1
Duzib068G0735 Durio zibethinus HOM05D000083 ORTHO05D001244 4.0e-12 75.5 74 56.8
Glyma.10G232800 Glycine max HOM05D000083 ORTHO05D001244 4.0e-12 75.5 65 60.0
Glyma.20G161500 Glycine max HOM05D000083 ORTHO05D001244 4.0e-12 75.5 65 60.0
Hma1.2p1_1318F.1_g275200 Hydrangea macrophylla HOM05D000083 ORTHO05D001244 4.0e-12 75.5 76 59.2
Psat6g193600 Pisum sativum HOM05D000083 ORTHO05D001244 4.0e-12 75.5 71 59.2
Sed0017998 Sechium edule HOM05D000083 ORTHO05D001244 4.0e-12 75.5 73 58.9
Lalb_Chr21g0305151 Lupinus albus HOM05D000083 ORTHO05D001244 6.8e-12 74.7 65 58.5
Potri.003G129000 Populus trichocarpa HOM05D000083 ORTHO05D001244 6.8e-12 74.7 71 59.2
CANSAT21G0447 Cannabis sativa HOM05D000083 ORTHO05D001244 2.0e-11 73.2 71 54.9
Lalb_Chr06g0161261 Lupinus albus HOM05D000083 ORTHO05D001244 2.0e-11 73.2 65 60.0
ClCG01G004530 Citrullus lanatus HOM05D000083 ORTHO05D001244 2.6e-11 72.8 65 61.5
Glyma.16G181000 Glycine max HOM05D000083 ORTHO05D001244 3.4e-11 72.4 65 60.0
Phvul.004G112000 Phaseolus vulgaris HOM05D000083 ORTHO05D001244 3.4e-11 72.4 65 60.0
Phvul.007G072801 Phaseolus vulgaris HOM05D000083 ORTHO05D001244 4.4e-11 72.0 65 58.5
Potri.001G102900 Populus trichocarpa HOM05D000083 ORTHO05D001244 4.4e-11 72.0 71 56.3
MBI18_g29413_MAGBIO Magnolia biondii HOM05D000083 ORTHO05D001244 5.8e-11 71.6 74 56.8
Lj2g0017911 Lotus japonicus HOM05D000083 ORTHO05D001244 7.6e-11 71.2 65 58.5
Gohir.D08G201900 Gossypium hirsutum HOM05D000083 ORTHO05D001244 9.9e-11 70.9 74 51.4
Gorai.004G213200 Gossypium raimondii HOM05D000083 ORTHO05D001244 9.9e-11 70.9 74 51.4
VMungo0464G0294 Vigna mungo HOM05D000083 ORTHO05D001244 1.3e-10 70.5 65 58.5
Ca_10738_v3 Cicer arietinum L. HOM05D000083 ORTHO05D001244 1.7e-10 70.1 71 54.9
Ciclev10018781m.g Citrus clementina HOM05D000083 ORTHO05D001244 1.7e-10 70.1 72 55.6
CiPaw.05G263800 Carya illinoinensis HOM05D000083 ORTHO05D001244 2.2e-10 69.7 71 54.9
Gohir.A08G183301 Gossypium hirsutum HOM05D000083 ORTHO05D001244 2.2e-10 69.7 74 51.4
Lj8C220T6 Lonicera japonica HOM05D000083 ORTHO05D001244 2.4e-09 66.2 68 55.9
Prupe.5G102100 Prunus persica HOM05D000083 ORTHO05D001244 4.1e-09 65.5 61 57.4
Nitab4.5_0001615g0050 Nicotiana tabacum HOM05D000083 ORTHO05D001244 5.4e-09 65.1 73 50.7
Sabra03G0091700 Salix brachista HOM05D000083 ORTHO05D001244 5.4e-09 65.1 71 56.3
Ah.07g206840 Amaranthus hybridus HOM05D000083 ORTHO05D001244 7.1e-09 64.7 73 52.1
EL10Ac7g17909 Beta vulgaris HOM05D000083 ORTHO05D001244 7.1e-09 64.7 73 53.4
Cpa.g.sc74.1 Carica papaya HOM05D000083 ORTHO05D001244 9.2e-09 64.3 70 48.6
Sopen08g029520 Solanum pennellii HOM05D000083 ORTHO05D001244 9.2e-09 64.3 65 53.8
Lj1A1001T55 Lonicera japonica HOM05D000083 ORTHO05D001244 1.2e-08 63.9 44 70.5
AUR62021150 Chenopodium quinoa HOM05D000083 ORTHO05D001244 2.1e-08 63.2 73 52.1
Lsat_1_v5_gn_3_7200 Lactuca sativa HOM05D000083 ORTHO05D001244 6.0e-08 61.6 65 52.3
PGSC0003DMG400012203 Solanum tuberosum HOM05D000083 ORTHO05D001244 6.0e-08 61.6 65 52.3
AUR62031384 Chenopodium quinoa HOM05D000083 ORTHO05D001244 7.8e-08 61.2 73 52.1
HanXRQChr06g0165921 Helianthus annuus HOM05D000083 ORTHO05D001244 1.0e-07 60.8 65 53.8
Manes.02G020500 Manihot esculenta HOM05D000083 ORTHO05D001244 1.0e-07 60.8 62 56.5
Oeu061654.1 Olea europaea HOM05D000083 ORTHO05D001244 1.0e-07 60.8 64 50.0
Ah.13g068750 Amaranthus hybridus HOM05D001221 ORTHO05D001244 1.7e-07 60.1 71 50.7
Rhsim02G0232800 Rhododendron simsii HOM05D000083 ORTHO05D001244 1.7e-07 60.1 67 58.2
ECA246G4433 Erigeron canadensis HOM05D000083 ORTHO05D001244 2.3e-07 59.7 65 52.3
RcHm_v2.0_Chr7g0197281 Rosa chinensis HOM05D000083 ORTHO05D001244 3.0e-07 59.3 59 57.6
Sc13g0008920 Simmondsia chinensis HOM05D000083 ORTHO05D001244 5.1e-07 58.5 56 55.4
Sed0002475 Sechium edule HOM05D000083 ORTHO05D001244 8.6e-07 57.8 65 53.8
MD06G1085900 Malus domestica HOM05D000083 ORTHO05D001244 1.1e-06 57.4 54 57.4
Sed0009456 Sechium edule HOM05D000083 ORTHO05D001244 1.5e-06 57.0 65 52.3
Peaxi162Scf00119g01221 Petunia axillaris HOM05D000083 ORTHO05D001244 1.9e-06 56.6 73 45.2
Nitab4.5_0002975g0090 Nicotiana tabacum HOM05D000083 ORTHO05D001244 3.3e-06 55.8 63 50.8
CiPaw.11G133900 Carya illinoinensis HOM05D000083 ORTHO05D001244 5.6e-06 55.1 66 50.0
FvH4_5g02670 Fragaria vesca HOM05D000083 ORTHO05D001244 5.6e-06 55.1 59 54.2


User provided reference genes

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