Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 0.0e+00 1197.6 714 100.0
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 8.6e-174 614.8 749 62.8
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 4.0e-155 552.7 757 62.0
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 2.0e-154 550.4 764 57.9
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 1.5e-138 497.7 761 53.4
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 1.1e-136 491.5 766 53.5
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.3e-134 483.8 762 50.0
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 2.5e-133 480.3 762 55.2
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.5e-130 471.1 734 56.8
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 9.9e-130 468.4 770 51.7
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.1e-128 464.9 772 52.1
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 1.2e-127 461.5 814 51.6
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 6.6e-126 455.7 761 50.1
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 8.1e-124 448.7 766 49.2
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 5.8e-122 442.6 800 48.1
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.8e-121 439.9 772 48.1
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 3.2e-120 436.8 771 49.5
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 7.1e-120 435.6 667 52.0
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 1.0e-118 431.8 747 52.1
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 1.3e-118 431.4 778 48.1
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 4.3e-117 426.4 783 49.8
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.1e-115 421.8 725 52.6
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 3.1e-115 420.2 741 51.7
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 5.3e-115 419.5 784 45.8
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 3.4e-114 416.8 793 50.2
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 2.2e-113 414.1 740 52.0
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 2.5e-112 410.6 732 44.3
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.6e-111 407.9 755 50.2
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.5e-109 401.4 784 46.7
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.3e-108 398.3 779 48.4
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 2.1e-108 397.5 755 51.0
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 2.8e-108 397.1 705 47.7
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 3.7e-108 396.7 776 46.0
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 2.4e-107 394.0 773 49.8
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.7e-105 387.9 685 45.1
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 2.9e-105 387.1 755 48.2
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 2.9e-105 387.1 761 43.9
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 7.2e-104 382.5 812 46.6
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.0e-102 378.6 777 48.0
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.8e-102 377.9 787 47.6
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.8e-102 377.9 753 44.2
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 6.7e-102 375.9 781 48.0
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 2.5e-101 374.0 759 44.1
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 7.4e-101 372.5 782 44.2
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 7.4e-101 372.5 782 44.2
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 9.7e-101 372.1 778 43.8
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.1e-99 368.6 776 43.8
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.4e-99 368.2 742 48.0
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 3.1e-99 367.1 719 48.3
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 4.5e-98 363.2 809 46.2
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 1.4e-96 358.2 829 45.2
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 7.2e-96 355.9 818 45.2
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 9.4e-96 355.5 778 47.3
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 3.6e-95 353.6 795 46.3
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 6.1e-95 352.8 768 41.7
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 3.0e-94 350.5 730 46.3
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 5.1e-94 349.7 773 47.6
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 4.3e-93 346.7 726 46.7
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 1.7e-92 344.7 737 47.6
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 2.2e-92 344.4 814 43.0
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 2.8e-92 344.0 819 42.1
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.8e-91 341.3 814 40.3
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 1.8e-91 341.3 764 42.1
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 4.1e-91 340.1 421 68.6
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 5.3e-91 339.7 730 46.3
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 3.4e-90 337.0 639 44.9
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 3.2e-88 330.5 755 39.6
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.1e-85 322.0 701 44.9
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 1.5e-85 321.6 728 45.3
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 2.6e-85 320.9 727 45.1
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.2e-84 317.8 761 39.0
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 8.2e-84 315.8 724 41.2
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 3.5e-82 310.5 674 47.9
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.3e-81 308.5 576 45.0
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.6e-79 300.4 754 39.4
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 4.7e-79 300.1 726 42.6
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 4.7e-79 300.1 804 43.8
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.7e-76 291.6 685 44.2
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 1.4e-75 288.5 754 38.9
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 1.4e-75 288.5 719 43.3
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 3.1e-75 287.3 687 42.1
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 1.7e-73 281.6 721 38.1
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.9e-73 280.8 752 39.9
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 2.9e-73 280.8 807 37.7
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 8.5e-73 279.3 771 37.6
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 4.2e-72 276.9 762 42.7
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 5.5e-72 276.6 726 42.3
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 3.6e-71 273.9 657 43.7
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 4.7e-71 273.5 739 43.6
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 1.4e-70 271.9 756 39.3
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.5e-69 268.5 748 38.5
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 1.5e-69 268.5 753 42.6
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 7.5e-69 266.2 682 37.7
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 3.7e-68 263.8 675 39.4
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 3.7e-68 263.8 646 40.4
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.4e-67 261.9 458 46.3
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 3.1e-67 260.8 265 60.0
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 2.0e-66 258.1 750 37.3
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 5.0e-65 253.4 732 41.5
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 8.5e-65 252.7 800 35.6
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 1.5e-64 251.9 781 41.5
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 3.6e-63 247.3 463 54.9
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 8.0e-63 246.1 719 38.5
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.4e-62 245.4 750 37.1
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.8e-62 245.0 754 37.0
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 3.0e-62 244.2 352 50.9
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 5.2e-62 243.4 750 42.0
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 2.2e-60 238.0 742 34.5
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 2.5e-56 224.6 775 34.6
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 2.8e-55 221.1 759 39.7
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 6.1e-55 219.9 738 39.6
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.4e-54 218.8 713 34.9
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 6.8e-54 216.5 788 37.7
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 4.9e-52 210.3 616 38.5
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 5.9e-50 203.4 750 38.9
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.3e-49 202.2 752 39.9
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 3.9e-49 200.7 641 38.5
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 8.6e-49 199.5 669 38.4
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.5e-48 198.0 771 33.2
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 3.3e-48 197.6 623 36.6
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 8.0e-47 193.0 704 40.2
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.4e-46 192.2 632 39.1
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 2.3e-46 191.4 633 35.7
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 3.1e-46 191.0 744 37.5
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 6.8e-46 189.9 729 39.6
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 6.8e-46 189.9 725 39.3
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.2e-45 189.1 762 40.4
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 9.8e-45 186.0 720 39.3
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.3e-44 185.7 466 40.1
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.2e-44 184.9 492 40.2
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 4.9e-44 183.7 278 46.8
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 9.2e-43 179.5 716 33.4
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 1.7e-41 175.3 322 44.7
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 6.6e-41 173.3 603 34.8
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.1e-40 172.6 703 32.0
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 1.5e-40 172.2 642 34.9
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.2e-39 169.1 641 35.6
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 6.2e-39 166.8 204 53.4
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.2e-38 163.7 715 31.9
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 4.9e-36 157.1 435 37.7
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 1.6e-34 152.1 755 30.9
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 7.3e-32 143.3 447 46.5
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 9.5e-32 142.9 830 29.9
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 6.2e-31 140.2 618 32.4
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 8.1e-31 139.8 312 41.7
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.6e-26 125.6 188 46.3
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 3.5e-26 124.4 525 33.9
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 2.5e-24 118.2 421 44.9
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 2.6e-21 108.2 142 56.3
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 3.4e-21 107.8 555 31.9
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 3.4e-21 107.8 555 31.9
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 9.9e-21 106.3 268 42.2
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 3.8e-20 104.4 128 50.8
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 8.4e-20 103.2 123 52.8
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 2.4e-19 101.7 525 37.5
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 1.6e-18 99.0 585 32.3
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 4.6e-18 97.4 519 32.0
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 3.0e-17 94.7 217 37.3
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 5.1e-17 94.0 641 34.3
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 8.7e-17 93.2 588 31.3
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 3.3e-16 91.3 129 52.7
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 5.8e-13 80.5 113 46.9
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.2e-11 74.7 257 33.9
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 9.3e-11 73.2 108 48.1
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 1.0e-09 69.7 101 47.5
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.3e-09 69.3 118 40.7
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 5.1e-09 67.4 82 50.0
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.5e-08 65.9 60 63.3
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 5.6e-08 63.9 101 43.6
Oeu030973.1 Olea europaea HOM05D003795 ORTHO05D004308 7.4e-08 63.5 60 65.0
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 3.6e-07 61.2 576 30.2
Psat7g004680 Pisum sativum HOM05D003795 ORTHO05D004308 1.8e-06 58.9 92 48.9


User provided reference genes

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