Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28245 Davidia involucrata HOM05D000010 ORTHO05D000063 1.1e-150 536.6 265 100.0
Hma1.2p1_0034F.1_g021410 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 6.6e-95 351.3 289 64.7
Actinidia40415 Actinidia chinensis HOM05D000010 ORTHO05D000063 5.6e-78 295.0 299 55.9
CSS0038294 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 8.0e-77 291.2 277 58.8
CSS0049992 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 3.1e-76 289.3 277 58.5
GSVIVG01035214001 Vitis vinifera HOM05D000010 ORTHO05D000063 3.1e-68 262.7 287 53.0
TAR227G0002 Trochodendron aralioides HOM05D000010 ORTHO05D000063 7.5e-67 258.1 278 53.2
TAR629G2502 Trochodendron aralioides HOM05D000010 ORTHO05D000063 9.2e-65 251.1 292 49.7
FvH4_1g27330 Fragaria vesca HOM05D000010 ORTHO05D000063 1.5e-62 243.8 286 47.9
FAN19G0740 Fragaria x ananassa HOM05D000010 ORTHO05D000063 1.5e-62 243.8 286 47.9
Cc07_g12760 Coffea canephora HOM05D000010 ORTHO05D000063 3.6e-61 239.2 287 48.4
Actinidia17163 Actinidia chinensis HOM05D000010 ORTHO05D000063 2.4e-60 236.5 194 63.9
Lj4C252T1 Lonicera japonica HOM05D000010 ORTHO05D000063 2.4e-60 236.5 275 51.6
MD17G1286600 Malus domestica HOM05D000010 ORTHO05D000063 8.9e-60 234.6 293 47.8
FAN28G1629 Fragaria x ananassa HOM05D000010 ORTHO05D000063 1.5e-59 233.8 277 46.9
FAN26G2900 Fragaria x ananassa HOM05D000010 ORTHO05D000063 2.0e-59 233.4 281 45.9
FAN23G0511 Fragaria x ananassa HOM05D000010 ORTHO05D000063 2.6e-59 233.0 277 46.9
RcHm_v2.0_Chr3g0488761 Rosa chinensis HOM05D000010 ORTHO05D000063 5.8e-59 231.9 277 47.3
Nn4g24728 Nelumbo nucifera HOM05D000010 ORTHO05D000063 2.9e-58 229.6 294 46.6
MD09G1279900 Malus domestica HOM05D000010 ORTHO05D000063 3.8e-58 229.2 291 47.4
Prupe.3G014400 Prunus persica HOM05D000010 ORTHO05D000063 2.4e-57 226.5 280 46.4
vmacro18509 Vaccinium macrocarpon HOM05D000010 ORTHO05D000063 5.4e-57 225.3 265 50.6
LjContig00141g0019933 Lotus japonicus HOM05D000010 ORTHO05D000063 2.1e-53 213.4 284 46.8
Cfa007745 Carpinus fangiana HOM05D000189 ORTHO05D000474 4.8e-53 212.2 279 45.9
QL02p064244 Quercus lobata HOM05D000010 ORTHO05D000063 4.8e-53 212.2 242 51.2
Rhsim08G0021400 Rhododendron simsii HOM05D000010 ORTHO05D000063 5.3e-52 208.8 266 47.4
Manes.02G081200 Manihot esculenta HOM05D000010 ORTHO05D000063 1.5e-51 207.2 276 43.8
Lj6g0023621 Lotus japonicus HOM05D000010 ORTHO05D000063 3.8e-50 202.6 278 44.6
Potri.017G139500 Populus trichocarpa HOM05D000010 ORTHO05D000063 1.4e-49 200.7 285 45.3
Glyma.18G043900 Glycine max HOM05D000010 ORTHO05D000063 1.9e-49 200.3 271 45.0
CAN.G1681.12 Capsicum annuum HOM05D000010 ORTHO05D000063 3.2e-49 199.5 270 43.7
Psat5g142520 Pisum sativum HOM05D000010 ORTHO05D000063 7.8e-48 194.9 279 44.8
Ciclev10011293m.g Citrus clementina HOM05D000010 ORTHO05D000063 1.0e-47 194.5 276 47.5
Nitab4.5_0013401g0020 Nicotiana tabacum HOM05D000010 ORTHO05D000063 1.7e-47 193.7 282 41.5
Sopen02g025910 Solanum pennellii HOM05D006811 ORTHO05D008419 1.7e-47 193.7 260 44.6
Glyma.02G240500 Glycine max HOM05D000010 ORTHO05D000063 2.3e-47 193.4 288 44.4
Medtr3g064580 Medicago truncatula HOM05D000010 ORTHO05D000063 3.0e-47 193.0 278 44.2
Nitab4.5_0000483g0290 Nicotiana tabacum HOM05D006811 ORTHO05D008419 3.9e-47 192.6 276 41.7
Manes.01G123600 Manihot esculenta HOM05D000010 ORTHO05D000063 5.1e-47 192.2 277 43.7
Sabra17G0117600 Salix brachista HOM05D000010 ORTHO05D000063 8.7e-47 191.4 288 42.7
Thecc.04G059900 Theobroma cacao HOM05D000010 ORTHO05D000063 1.1e-46 191.0 281 44.8
DCAR_014143 Daucus carota HOM05D000010 ORTHO05D000063 4.3e-46 189.1 273 41.4
arahy.Tifrunner.gnm1.ann1.XKF840 Arachis hypogaea HOM05D000010 ORTHO05D000063 7.3e-46 188.3 274 46.0
Sabra04G0053800 Salix brachista HOM05D000010 ORTHO05D000063 7.3e-46 188.3 292 41.4
Glyma.11G212400 Glycine max HOM05D000010 ORTHO05D000063 9.6e-46 188.0 260 45.0
Potri.004G081000 Populus trichocarpa HOM05D000010 ORTHO05D000063 1.3e-45 187.6 290 42.8
arahy.Tifrunner.gnm1.ann1.1GPE0T Arachis hypogaea HOM05D000010 ORTHO05D000063 2.8e-45 186.4 274 46.4
Lalb_Chr10g0104051 Lupinus albus HOM05D000010 ORTHO05D000063 2.8e-45 186.4 268 43.7
Lalb_Chr18g0053691 Lupinus albus HOM05D000010 ORTHO05D000063 4.8e-45 185.7 269 42.0
DCAR_003409 Daucus carota HOM05D000010 ORTHO05D000063 8.1e-45 184.9 270 45.2
HanXRQChr14g0443401 Helianthus annuus HOM05D000010 ORTHO05D000063 1.8e-44 183.7 268 44.8
Phvul.008G241200 Phaseolus vulgaris HOM05D000010 ORTHO05D000063 3.1e-44 183.0 275 44.0
Atru.chr1.2134 Acer truncatum HOM05D000010 ORTHO05D000063 6.9e-44 181.8 267 41.9
Eucgr.F02910 Eucalyptus grandis HOM05D000010 ORTHO05D000063 7.6e-43 178.3 282 41.1
Glyma.14G210000 Glycine max HOM05D000010 ORTHO05D000063 2.9e-42 176.4 274 43.4
Phvul.006G087000 Phaseolus vulgaris HOM05D000010 ORTHO05D000063 1.9e-41 173.7 270 41.9
TPR.G5302 Trifolium pratense HOM05D000010 ORTHO05D000063 3.2e-41 172.9 268 41.0
Haze_14328 Corylus avellana HOM05D000010 ORTHO05D000063 4.2e-41 172.6 245 45.3
HanXRQChr16g0532331 Helianthus annuus HOM05D000010 ORTHO05D000063 8.7e-39 164.9 268 40.3
CiPaw.04G049700 Carya illinoinensis HOM05D000010 ORTHO05D000063 1.5e-38 164.1 286 42.0
Lsat_1_v5_gn_2_71740 Lactuca sativa HOM05D000010 ORTHO05D000063 1.5e-38 164.1 271 41.7
Lsat_1_v5_gn_3_67400 Lactuca sativa HOM05D000010 ORTHO05D000063 1.9e-38 163.7 227 45.4
Nitab4.5_0000091g0390 Nicotiana tabacum HOM05D000010 ORTHO05D000063 2.5e-38 163.3 260 41.2
Medtr5g076850 Medicago truncatula HOM05D000010 ORTHO05D000063 3.3e-38 162.9 275 38.9
VMungo0647G1689 Vigna mungo HOM05D000010 ORTHO05D000063 3.3e-38 162.9 272 41.9
TPR.G26680 Trifolium pratense HOM05D000010 ORTHO05D000063 5.6e-38 162.2 256 41.0
Solyc02g036430.2 Solanum lycopersicum HOM05D000010 ORTHO05D000063 9.6e-38 161.4 159 54.7
Aqoxy3G04156 Aquilegia oxysepala HOM05D000010 ORTHO05D000063 1.3e-37 161.0 296 40.2
CANSAT78G2463 Cannabis sativa HOM05D000010 ORTHO05D000063 2.8e-37 159.8 297 38.4
PGSC0003DMG400021474 Solanum tuberosum HOM05D000010 ORTHO05D000063 2.8e-37 159.8 159 54.1
TWI53G0309 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 3.7e-37 159.5 269 39.0
COL.COLO4_20040 Corchorus olitorius HOM05D000010 ORTHO05D000063 6.2e-37 158.7 277 40.8
MBI08_g16125_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000063 1.1e-36 157.9 302 34.1
SalBow5G4598 Salvia bowleyana HOM05D000010 ORTHO05D000063 3.1e-36 156.4 145 55.9
SalBow5G5382 Salvia bowleyana HOM05D000010 ORTHO05D000063 3.1e-36 156.4 145 55.9
CiPaw.03G075700 Carya illinoinensis HOM05D000010 ORTHO05D000063 6.9e-36 155.2 294 40.8
Duzib138G1680 Durio zibethinus HOM05D000010 ORTHO05D000063 5.8e-35 152.1 280 39.6
CAN.G269.9 Capsicum annuum HOM05D000010 ORTHO05D000063 2.2e-34 150.2 197 45.7
arahy.Tifrunner.gnm1.ann1.JBNT97 Arachis hypogaea HOM05D000010 ORTHO05D000063 8.4e-34 148.3 260 38.8
PSO782G4912 Papaver somniferum HOM05D000010 ORTHO05D000063 1.1e-33 147.9 312 37.8
Gohir.A08G038500 Gossypium hirsutum HOM05D000010 ORTHO05D000063 2.5e-33 146.7 195 45.1
Gohir.D08G048700 Gossypium hirsutum HOM05D000010 ORTHO05D000063 7.1e-33 145.2 197 45.2
Peaxi162Scf00294g00625 Petunia axillaris HOM05D000010 ORTHO05D000063 1.2e-32 144.4 190 49.5
Gorai.004G048200 Gossypium raimondii HOM05D000010 ORTHO05D000063 1.6e-32 144.1 197 44.7
Lalb_Chr15g0085221 Lupinus albus HOM05D000010 ORTHO05D000063 4.6e-32 142.5 287 35.5
PSO063G0909 Papaver somniferum HOM05D000010 ORTHO05D000063 4.6e-32 142.5 313 38.0
SGA_v2.0_scaffold45G17109 Striga asiatica HOM05D000010 ORTHO05D000063 4.6e-32 142.5 262 37.0
Oeu032294.1 Olea europaea HOM05D000010 ORTHO05D000063 6.0e-32 142.1 175 44.6
CsaV3_5G020440 Cucumis sativus L. HOM05D000010 ORTHO05D000063 1.0e-31 141.4 279 37.6
HanXRQChr12g0365731 Helianthus annuus HOM05D000010 ORTHO05D000063 2.3e-31 140.2 278 35.6
MELO3C025099.2 Cucumis melo HOM05D000010 ORTHO05D000063 1.9e-30 137.1 273 37.7
ECA238G0794 Erigeron canadensis HOM05D006811 ORTHO05D008419 1.9e-30 137.1 191 43.5
Nitab4.5_0002648g0020 Nicotiana tabacum HOM05D000010 ORTHO05D000063 2.5e-30 136.7 192 43.2
Peaxi162Scf00521g00049 Petunia axillaris HOM05D000010 ORTHO05D000063 2.5e-30 136.7 195 41.0
Peaxi162Scf00713g00018 Petunia axillaris HOM05D000010 ORTHO05D000063 2.5e-30 136.7 271 35.1
Lalb_Chr20g0117071 Lupinus albus HOM05D000010 ORTHO05D000063 3.3e-30 136.3 248 38.3
Migut.K00745 Erythranthe guttata HOM05D000010 ORTHO05D000063 3.7e-29 132.9 148 52.0
PSO832G4375 Papaver somniferum HOM05D000010 ORTHO05D000063 4.8e-29 132.5 146 50.7
PSO782G2931 Papaver somniferum HOM05D000010 ORTHO05D000063 1.4e-28 131.0 146 50.7
Sed0019689 Sechium edule HOM05D000010 ORTHO05D000063 4.0e-28 129.4 210 42.9
AL2G23290 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 3.4e-27 126.3 271 36.9
ClCG01G008530 Citrullus lanatus HOM05D000010 ORTHO05D000063 5.8e-27 125.6 283 36.7
Solyc02g081270.4 Solanum lycopersicum HOM05D000010 ORTHO05D000063 2.9e-26 123.2 105 60.0
AT1G65910 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 6.5e-26 122.1 273 35.9
Cpa.g.sc178.32 Carica papaya HOM05D000010 ORTHO05D000063 6.5e-26 122.1 238 35.7
Sp5g20960 Schrenkiella parvula HOM05D000010 ORTHO05D000063 6.5e-26 122.1 272 33.5
Carub.0002s1185 Capsella rubella HOM05D000010 ORTHO05D000063 1.1e-25 121.3 274 35.0
Gohir.D11G176800 Gossypium hirsutum HOM05D000010 ORTHO05D000063 2.5e-25 120.2 144 50.0
Gorai.007G188800 Gossypium raimondii HOM05D000010 ORTHO05D000063 2.5e-25 120.2 144 50.0
Thhalv10018275m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 7.1e-25 118.6 273 36.6
MBI08_g28718_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000063 1.3e-23 114.4 143 44.1
Gohir.A11G170000 Gossypium hirsutum HOM05D000010 ORTHO05D000063 1.8e-23 114.0 252 35.3
MSTRG.15637 Avicennia marina HOM05D000010 ORTHO05D000063 3.9e-23 112.8 147 42.2
Nitab4.5_0002297g0020 Nicotiana tabacum HOM05D000010 ORTHO05D000063 8.7e-23 111.7 191 40.3
MBI06_g20927_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000063 2.5e-22 110.2 201 36.8
Oeu012319.2 Olea europaea HOM05D000010 ORTHO05D000063 2.5e-22 110.2 164 40.2
Sed0007727 Sechium edule HOM05D000010 ORTHO05D000063 5.7e-22 109.0 190 41.1
Hund06873 Selenicereus undatus HOM05D000010 ORTHO05D000063 1.3e-21 107.8 267 32.6
MBI06_g34025_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000063 1.6e-21 107.5 198 36.9
SGA_v2.0_scaffold115G32049 Striga asiatica HOM05D000010 ORTHO05D000063 4.1e-20 102.8 159 37.7
PGR004G2042 Punica granatum HOM05D000010 ORTHO05D000063 5.3e-20 102.4 308 32.8
A02p13410 Brassica napus HOM05D000010 ORTHO05D000063 1.5e-19 100.9 136 47.1
BcaC03g14726 Brassica carinata HOM05D000010 ORTHO05D000063 2.6e-19 100.1 136 46.3
C02p21710 Brassica napus HOM05D000010 ORTHO05D000063 2.6e-19 100.1 136 46.3
THA.LOC104805658 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 3.4e-19 99.8 273 31.5
CARHR057810 Cardamine hirsuta HOM05D000010 ORTHO05D000063 7.7e-19 98.6 262 33.2
vmacro20466 Vaccinium macrocarpon HOM05D000010 ORTHO05D000063 1.3e-18 97.8 133 48.9
Sc09g0004480 Simmondsia chinensis HOM05D000010 ORTHO05D000063 3.6e-16 89.7 263 29.3
Ca_17070_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000063 6.1e-16 89.0 85 58.8
EL10Ac4g08934 Beta vulgaris HOM05D000010 ORTHO05D000063 2.3e-15 87.0 200 30.5
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 2.0e-14 84.0 136 40.4
Os03g0119966 Oryza sativa ssp. japonica HOM05D000010 ORTHO05D000063 6.3e-13 79.0 274 29.6
THA.LOC104820864 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 6.3e-13 79.0 155 35.5
AUR62003400 Chenopodium quinoa HOM05D000010 ORTHO05D000063 1.8e-12 77.4 134 35.1
Hund22199 Selenicereus undatus HOM05D000010 ORTHO05D000063 1.8e-12 77.4 131 36.6
Ah.06g191640 Amaranthus hybridus HOM05D000010 ORTHO05D000063 1.2e-11 74.7 209 30.1
AL6G28310 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 5.0e-10 69.3 139 35.3
Zm00001eb001460 Zea mays HOM05D000010 ORTHO05D000063 1.1e-09 68.2 175 30.3
AUR62004778 Chenopodium quinoa HOM05D000010 ORTHO05D000063 1.4e-09 67.8 131 33.6
Sp6g26970 Schrenkiella parvula HOM05D000010 ORTHO05D000063 1.4e-09 67.8 130 34.6
Sc20g0000800 Simmondsia chinensis HOM05D000010 ORTHO05D000063 3.2e-09 66.6 157 36.3
Thhalv10013344m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 1.6e-08 64.3 129 33.3
BcaB08g36794 Brassica carinata HOM05D000010 ORTHO05D000063 2.7e-08 63.5 134 30.6
THA.LOC104802913 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 3.6e-08 63.2 132 34.8
Nitab4.5_0009298g0020 Nicotiana tabacum HOM05D000010 ORTHO05D000063 6.1e-08 62.4 45 62.2
TWI77G0949 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 7.9e-08 62.0 76 47.4
unitig_748.g8626 Utricularia gibba HOM05D000010 ORTHO05D000063 7.9e-08 62.0 142 33.8
Oeu045802.1 Olea europaea HOM05D000010 ORTHO05D000063 5.1e-07 59.3 45 66.7
Zm00001eb403880 Zea mays HOM05D000010 ORTHO05D000063 2.6e-06 57.0 141 31.9
CARHR195950 Cardamine hirsuta HOM05D000010 ORTHO05D000063 9.7e-06 55.1 119 32.8


User provided reference genes

Program Settings