Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 3.4e-106 388.3 189 100.0
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 5.0e-97 357.8 188 91.0
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 9.4e-96 353.6 189 91.5
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.6e-95 352.8 189 89.4
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 2.1e-95 352.4 189 88.4
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 4.7e-95 351.3 189 89.9
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 8.0e-95 350.5 189 89.9
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 1.4e-94 349.7 189 89.4
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 1.8e-94 349.4 189 87.3
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 2.3e-94 349.0 192 90.1
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 3.0e-94 348.6 189 88.4
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 3.0e-94 348.6 189 88.9
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 3.0e-94 348.6 189 88.9
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 4.0e-94 348.2 188 89.4
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 4.0e-94 348.2 189 86.8
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 5.2e-94 347.8 189 87.8
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 5.2e-94 347.8 189 86.2
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 5.2e-94 347.8 189 89.4
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 6.7e-94 347.4 189 88.9
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 6.7e-94 347.4 189 89.4
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 8.8e-94 347.1 189 87.8
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 8.8e-94 347.1 189 87.3
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 1.2e-93 346.7 189 88.9
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.2e-93 346.7 189 86.8
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 1.5e-93 346.3 189 87.8
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 2.0e-93 345.9 189 87.8
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 5.7e-93 344.4 188 88.8
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 5.7e-93 344.4 189 88.4
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 2.2e-92 342.4 189 87.8
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 2.2e-92 342.4 189 86.2
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 2.2e-92 342.4 191 87.4
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 3.7e-92 341.7 189 87.3
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 4.8e-92 341.3 189 85.2
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 6.3e-92 340.9 191 85.9
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 6.3e-92 340.9 189 86.8
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 1.4e-91 339.7 191 85.3
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 1.4e-91 339.7 189 86.8
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 1.4e-91 339.7 189 84.1
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 1.8e-91 339.3 189 85.2
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 2.4e-91 339.0 189 86.8
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 2.4e-91 339.0 192 88.0
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 3.1e-91 338.6 194 85.1
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 3.1e-91 338.6 189 85.2
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 4.1e-91 338.2 189 84.7
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 9.1e-91 337.0 189 86.2
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 2.0e-90 335.9 192 84.9
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 2.7e-90 335.5 193 83.4
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 3.5e-90 335.1 191 86.4
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 3.5e-90 335.1 190 86.3
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 4.5e-90 334.7 194 84.5
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 7.7e-90 334.0 189 83.6
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 1.0e-89 333.6 189 84.1
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 1.3e-89 333.2 191 85.9
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 1.3e-89 333.2 188 85.6
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 1.7e-89 332.8 191 84.8
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 2.2e-89 332.4 191 84.8
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 2.2e-89 332.4 189 85.7
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 2.2e-89 332.4 192 84.4
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 2.2e-89 332.4 192 84.9
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 5.0e-89 331.3 189 85.2
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 6.5e-89 330.9 189 83.1
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 8.5e-89 330.5 192 83.9
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 1.9e-88 329.3 192 82.8
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 1.9e-88 329.3 189 83.1
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 3.2e-88 328.6 192 83.9
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 4.2e-88 328.2 189 82.5
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 4.2e-88 328.2 189 81.5
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 4.2e-88 328.2 191 84.3
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 4.2e-88 328.2 192 81.2
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 5.5e-88 327.8 190 78.9
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 9.4e-88 327.0 191 82.2
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 9.4e-88 327.0 189 82.0
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 1.6e-87 326.2 191 83.8
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 2.1e-87 325.9 192 82.3
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 4.7e-87 324.7 194 82.5
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 4.7e-87 324.7 189 80.4
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 8.0e-87 323.9 191 81.7
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 1.8e-86 322.8 189 80.4
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 3.0e-86 322.0 189 85.2
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 4.0e-86 321.6 189 79.4
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 5.2e-86 321.2 191 81.7
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 5.2e-86 321.2 191 81.7
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 6.8e-86 320.9 191 81.7
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 8.8e-86 320.5 191 81.7
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 2.0e-85 319.3 191 81.2
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 2.0e-85 319.3 191 81.2
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 2.0e-85 319.3 191 81.2
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 3.4e-85 318.5 191 81.2
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 3.4e-85 318.5 191 81.2
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 4.4e-85 318.2 191 80.6
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 4.4e-85 318.2 191 80.6
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 4.4e-85 318.2 189 77.8
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 4.4e-85 318.2 184 81.5
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 5.7e-85 317.8 188 81.9
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 7.5e-85 317.4 189 79.9
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 7.5e-85 317.4 191 80.6
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 9.8e-85 317.0 192 79.7
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 1.3e-84 316.6 191 79.1
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 1.3e-84 316.6 189 81.5
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 1.3e-84 316.6 189 78.3
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 1.7e-84 316.2 191 79.6
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 1.7e-84 316.2 178 86.0
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 2.2e-84 315.8 188 80.3
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 2.8e-84 315.5 191 80.6
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 4.5e-82 308.1 189 77.2
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 1.0e-81 307.0 189 77.2
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 3.1e-75 285.4 156 87.8
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 7.3e-72 274.2 186 66.1
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 2.3e-70 269.2 191 68.1
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 2.9e-68 262.3 157 80.9
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 4.9e-68 261.5 147 86.4
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 1.4e-67 260.0 158 79.7
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 7.0e-67 257.7 189 65.6
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 1.6e-66 256.5 146 87.7
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 3.5e-66 255.4 190 64.2
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.1e-62 243.8 190 62.1
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 7.0e-59 231.1 183 57.4
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 7.0e-59 231.1 183 57.4
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 1.4e-54 216.9 191 50.8
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 8.9e-54 214.2 149 71.1
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 6.4e-52 208.0 179 62.6
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 1.2e-50 203.8 189 55.6
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 7.8e-50 201.1 187 51.9
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 1.8e-46 189.9 181 50.8
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 3.5e-42 175.6 190 52.6
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 9.6e-40 167.5 191 49.7
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 1.3e-36 157.1 94 80.9
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 1.6e-34 150.2 91 76.9
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 5.4e-27 125.2 79 73.4
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 8.7e-25 117.9 185 35.1
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 8.7e-25 117.9 183 35.0
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 4.0e-22 109.0 51 96.1
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 2.7e-10 69.7 161 29.8
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 2.5e-08 63.2 31 90.3
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 2.4e-06 56.6 28 82.1


User provided reference genes

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