Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 2.4e-109 399.1 229 100.0
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 2.6e-71 272.7 227 69.6
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 3.7e-70 268.9 227 68.3
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 5.9e-68 261.5 230 67.4
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 1.0e-67 260.8 227 66.5
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 2.2e-67 259.6 182 79.1
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 2.9e-67 259.2 221 69.2
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 8.5e-67 257.7 235 66.8
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 1.5e-66 256.9 229 64.6
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 5.5e-66 255.0 231 65.8
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 1.6e-65 253.4 227 64.8
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 3.6e-65 252.3 208 68.3
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 4.0e-64 248.8 221 64.7
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 1.5e-63 246.9 222 65.3
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 4.8e-62 241.9 206 65.5
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 6.3e-62 241.5 202 67.8
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 2.4e-61 239.6 202 67.3
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.2e-60 237.3 222 63.5
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.6e-60 236.9 220 61.8
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 2.2e-59 233.0 215 61.4
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 5.0e-59 231.9 233 59.7
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 6.5e-59 231.5 205 65.4
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 6.5e-59 231.5 197 68.5
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 8.5e-59 231.1 225 60.0
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 1.1e-58 230.7 225 58.2
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 4.2e-58 228.8 233 60.1
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 5.5e-58 228.4 209 63.2
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 7.2e-58 228.0 202 64.4
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 4.7e-57 225.3 204 63.2
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 4.7e-57 225.3 222 59.5
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 1.8e-56 223.4 233 57.9
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 3.0e-56 222.6 201 65.2
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 4.0e-56 222.2 208 62.0
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 5.2e-56 221.9 206 64.1
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 6.8e-56 221.5 257 52.9
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 1.2e-55 220.7 224 60.7
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 1.5e-55 220.3 235 57.4
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 2.6e-55 219.5 281 51.6
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 2.6e-55 219.5 219 56.2
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 5.7e-55 218.4 224 60.7
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 1.3e-54 217.2 200 63.5
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.7e-54 216.9 232 56.0
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 2.8e-54 216.1 238 56.3
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 3.7e-54 215.7 224 57.1
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 6.3e-54 214.9 200 57.0
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 8.3e-54 214.5 204 61.3
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 3.1e-53 212.6 235 56.2
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 7.0e-53 211.5 222 55.9
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 7.7e-52 208.0 235 54.0
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 2.9e-51 206.1 224 55.4
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 5.0e-51 205.3 197 59.9
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 6.6e-51 204.9 254 50.0
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 6.6e-51 204.9 192 59.4
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 1.1e-50 204.1 165 69.1
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 1.5e-50 203.8 228 55.7
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 1.9e-50 203.4 223 58.7
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 4.2e-50 202.2 201 60.2
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 5.5e-50 201.8 202 57.4
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 2.8e-49 199.5 206 58.7
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 3.6e-49 199.1 191 57.6
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 4.7e-49 198.7 195 59.5
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 1.4e-48 197.2 191 57.6
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 6.8e-48 194.9 197 57.4
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 1.2e-47 194.1 197 54.8
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.5e-47 193.7 213 53.1
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 1.5e-47 193.7 196 57.1
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 2.0e-47 193.4 214 50.5
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 2.0e-47 193.4 217 53.9
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.4e-47 192.6 197 56.9
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 1.3e-46 190.7 217 52.5
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 1.3e-46 190.7 208 53.4
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 1.7e-46 190.3 218 54.1
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 4.9e-46 188.7 216 51.9
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 1.4e-45 187.2 189 58.2
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 3.2e-45 186.0 211 50.2
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 4.1e-45 185.7 218 51.4
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.6e-44 183.7 232 56.5
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 4.5e-44 182.2 193 54.9
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 5.9e-44 181.8 228 50.4
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 5.9e-44 181.8 217 47.5
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 1.0e-43 181.0 187 55.6
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 1.3e-43 180.6 228 51.3
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 2.9e-43 179.5 213 51.2
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 2.9e-43 179.5 216 47.7
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 3.9e-43 179.1 228 50.9
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 8.6e-43 177.9 227 48.5
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 7.3e-42 174.9 180 57.2
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 1.6e-41 173.7 233 47.2
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 4.7e-41 172.2 229 48.0
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 8.0e-41 171.4 225 47.1
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 1.4e-40 170.6 230 46.1
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 2.3e-40 169.9 167 59.3
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 1.5e-39 167.2 212 50.0
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 3.7e-38 162.5 218 45.4
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 4.9e-38 162.2 211 48.8
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 1.1e-37 161.0 214 49.1
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 1.4e-37 160.6 217 47.5
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.9e-37 160.2 210 47.1
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 5.4e-37 158.7 220 47.3
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 9.2e-37 157.9 221 45.2
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 1.2e-36 157.5 189 49.2
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 4.6e-36 155.6 230 44.8
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 4.6e-36 155.6 216 47.2
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 4.6e-36 155.6 216 47.2
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 7.8e-36 154.8 188 50.5
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 1.0e-35 154.5 221 45.7
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 1.0e-35 154.5 162 56.2
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.7e-35 153.7 194 50.0
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 2.3e-35 153.3 190 48.9
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 3.9e-35 152.5 175 51.4
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 3.9e-35 152.5 175 51.4
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 6.6e-35 151.8 220 43.6
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 1.1e-34 151.0 166 53.6
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 1.9e-34 150.2 220 45.5
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 3.3e-34 149.4 270 44.4
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 3.1e-32 142.9 105 80.0
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 5.2e-32 142.1 185 50.3
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 1.5e-31 140.6 213 44.6
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 3.7e-30 136.0 218 42.2
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 3.7e-30 136.0 218 42.2
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 3.7e-30 136.0 218 42.2
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 7.1e-29 131.7 126 60.3
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 3.5e-28 129.4 196 44.9
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 7.8e-28 128.3 233 40.3
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 1.0e-27 127.9 199 44.2
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 1.0e-27 127.9 91 75.8
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 1.0e-27 127.9 223 46.2
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 7.3e-26 121.7 194 42.8
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 3.6e-25 119.4 216 40.7
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 1.8e-24 117.1 205 40.5
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 1.3e-22 110.9 125 52.0
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 6.0e-20 102.1 116 51.7
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 2.5e-18 96.7 114 49.1
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 1.6e-17 94.0 164 32.9
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 2.8e-17 93.2 111 49.5
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 3.4e-15 86.3 110 50.0
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 5.8e-15 85.5 103 50.5
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 1.7e-14 84.0 148 33.8
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 4.9e-14 82.4 71 59.2
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 1.4e-13 80.9 112 46.4
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 7.8e-12 75.1 99 46.5
EL10Ac2g03210 Beta vulgaris HOM05D004935 ORTHO05D005676 1.3e-11 74.3 54 66.7
DCAR_003417 Daucus carota HOM05D004935 ORTHO05D005676 5.1e-11 72.4 101 46.5
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 6.6e-11 72.0 85 55.3
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 1.5e-10 70.9 134 31.3
SEGI_39153 Sequoiadendron giganteum HOM05D004935 ORTHO05D005676 1.9e-10 70.5 112 43.8
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 5.6e-10 68.9 149 32.9
CSS0034638 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 1.3e-09 67.8 52 59.6
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.6e-09 67.4 71 49.3
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 1.4e-08 64.3 67 58.2
GSVIVG01001909001 Vitis vinifera HOM05D000258 ORTHO05D000153 6.9e-08 62.0 49 63.3


User provided reference genes

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