Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1165.2 603 100.0
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 6.0e-269 930.6 555 85.6
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 4.3e-251 871.3 556 79.3
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 9.5e-251 870.2 555 80.7
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 9.5e-251 870.2 556 79.9
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 1.5e-248 862.8 555 80.0
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 1.4e-246 856.3 550 77.8
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 2.4e-246 855.5 548 77.9
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 2.0e-240 835.9 560 78.0
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 1.3e-239 833.2 553 77.8
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 2.9e-239 832.0 554 77.1
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 2.4e-238 828.9 543 79.0
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 4.2e-238 828.2 554 77.4
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 9.3e-238 827.0 559 78.0
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 1.3e-236 823.2 554 75.8
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 8.7e-236 820.5 546 76.7
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 1.4e-233 813.1 558 74.2
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 3.9e-228 795.0 553 74.3
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 5.1e-228 794.7 554 73.8
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 1.1e-225 786.9 556 70.0
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 1.4e-225 786.6 560 74.3
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 1.4e-225 786.6 558 72.9
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 2.4e-225 785.8 554 73.6
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 4.0e-225 785.0 559 72.8
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 1.5e-224 783.1 556 69.6
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 7.6e-224 780.8 553 74.0
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 1.3e-223 780.0 576 72.2
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 3.2e-222 775.4 557 72.9
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 3.2e-222 775.4 558 72.0
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 3.2e-222 775.4 558 72.0
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 7.1e-222 774.2 560 71.1
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 2.7e-221 772.3 555 71.7
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 3.5e-221 771.9 558 71.5
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 3.0e-220 768.8 554 72.0
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 1.9e-219 766.1 555 69.2
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 1.9e-219 766.1 560 70.5
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 1.9e-219 766.1 560 71.2
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 1.3e-218 763.5 554 71.3
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 1.6e-218 763.1 577 70.2
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 2.8e-218 762.3 554 71.5
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 1.1e-217 760.4 558 71.3
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 1.1e-217 760.4 556 70.1
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 2.4e-217 759.2 560 69.5
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 2.4e-217 759.2 556 70.1
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 2.4e-217 759.2 586 67.2
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 9.0e-217 757.3 555 69.4
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 1.2e-216 756.9 554 71.1
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 3.4e-216 755.4 555 69.5
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 5.8e-216 754.6 550 70.7
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 6.5e-215 751.1 554 70.2
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 6.5e-215 751.1 550 69.3
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 8.4e-215 750.7 554 70.4
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 1.1e-214 750.4 549 70.7
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 2.5e-214 749.2 556 70.3
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 1.2e-213 746.9 558 70.1
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 1.6e-213 746.5 553 70.2
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 2.1e-213 746.1 556 70.5
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 2.7e-213 745.7 582 69.1
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 6.0e-213 744.6 555 70.8
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 1.8e-212 743.0 556 70.3
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 2.3e-212 742.7 551 69.5
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 3.0e-212 742.3 555 69.9
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 3.0e-212 742.3 557 70.2
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 3.3e-211 738.8 549 67.9
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 7.4e-211 737.6 549 69.0
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 1.6e-210 736.5 553 68.4
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 1.1e-209 733.8 557 67.5
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 1.4e-209 733.4 595 64.4
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 1.8e-209 733.0 555 69.0
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 6.9e-209 731.1 560 68.0
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 1.2e-208 730.3 552 67.6
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 3.4e-208 728.8 546 70.5
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 2.2e-207 726.1 555 68.6
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 7.2e-206 721.1 555 66.7
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 4.6e-205 718.4 553 67.8
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 4.3e-203 711.8 552 67.8
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 2.9e-199 699.1 562 66.9
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 2.9e-199 699.1 565 67.1
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 1.1e-198 697.2 562 65.7
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 2.5e-198 696.0 577 64.8
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 3.2e-198 695.7 562 65.8
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 7.2e-198 694.5 563 66.3
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 2.1e-197 693.0 540 66.3
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 3.6e-197 692.2 569 64.9
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 7.9e-197 691.0 554 66.6
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 7.9e-197 691.0 554 66.6
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 3.9e-196 688.7 563 65.7
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 2.6e-195 686.0 561 65.2
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 2.6e-195 686.0 561 65.2
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 6.3e-194 681.4 546 63.9
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 4.1e-193 678.7 586 62.6
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 7.0e-193 677.9 560 65.2
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 9.1e-193 677.6 558 65.1
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 2.6e-184 649.4 549 62.5
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 4.0e-180 635.6 678 53.2
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 7.0e-169 598.2 555 58.7
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 4.2e-166 589.0 528 61.6
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 5.2e-140 502.3 365 70.4
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 6.2e-133 478.8 546 46.9
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 9.6e-126 454.9 542 46.1
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 6.2e-125 452.2 481 53.0
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 9.3e-113 411.8 541 43.8
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 1.3e-109 401.4 547 41.9
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 9.3e-105 385.2 226 81.9
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 4.8e-101 372.9 248 79.0
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.2e-98 364.0 315 59.0
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 8.5e-90 335.5 245 71.8
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 1.0e-82 312.0 272 59.6
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.5e-81 307.4 217 67.7
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-76 290.8 418 40.7
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 3.1e-76 290.4 195 75.9
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 4.5e-75 286.6 187 71.7
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 3.7e-69 266.9 234 62.8
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 3.1e-68 263.8 200 64.5
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 1.0e-63 248.8 544 31.6
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.0e-59 234.6 140 79.3
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 8.3e-53 212.6 445 32.8
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.7e-45 188.3 133 78.9
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 5.6e-41 173.3 119 75.6
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.2e-35 155.6 185 49.7
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 2.0e-35 154.8 108 75.0
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 3.4e-22 110.9 86 67.4
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 5.8e-22 110.2 64 78.1
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 1.6e-19 102.1 68 72.1
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 3.5e-19 100.9 68 72.1
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 4.7e-16 90.5 70 64.3
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 4.0e-15 87.4 77 64.9
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 4.4e-14 84.0 52 76.9
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 8.4e-13 79.7 264 26.5
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.2e-11 75.9 134 38.1
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 1.7e-10 72.0 46 73.9
Thhalv10028211m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 7.6e-06 56.6 64 46.9
SEGI_36380 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 9.9e-06 56.2 50 52.0


User provided reference genes

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