Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28181 Davidia involucrata HOM05D007545 ORTHO05D009579 2.6e-23 114.0 52 100.0
Actinidia06485 Actinidia chinensis HOM05D007545 ORTHO05D009579 9.6e-18 95.5 49 85.7
CSS0045109 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 2.8e-17 94.0 48 87.5
CSS0047431 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 2.8e-17 94.0 48 87.5
Nn3g18372 Nelumbo nucifera HOM05D007545 ORTHO05D009579 9.0e-16 89.0 51 76.5
Lj4C259T9 Lonicera japonica HOM05D007545 ORTHO05D009579 5.8e-15 86.3 49 71.4
TWI77G0027 Tripterygium wilfordii HOM05D007545 ORTHO05D009579 1.3e-14 85.1 51 72.5
Prupe.3G166000 Prunus persica HOM05D007545 ORTHO05D009579 2.2e-14 84.3 51 68.6
Hma1.2p1_0158F.1_g070060 Hydrangea macrophylla HOM05D007545 ORTHO05D009579 2.9e-14 84.0 45 80.0
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 2.9e-14 84.0 47 80.9
ATR0753G016 Amborella trichopoda HOM05D007545 ORTHO05D009579 1.9e-13 81.3 52 69.2
Sc14g0006910 Simmondsia chinensis HOM05D007545 ORTHO05D009579 1.9e-13 81.3 51 66.7
ATR0661G317 Amborella trichopoda HOM05D007545 ORTHO05D009579 4.2e-13 80.1 46 76.1
CDE07G1026 Ceratophyllum demersum HOM05D007545 ORTHO05D009579 7.1e-13 79.3 45 75.6
Lalb_Chr10g0104281 Lupinus albus HOM05D007545 ORTHO05D009579 9.3e-13 79.0 51 62.7
Cpa.g.sc340.2 Carica papaya HOM05D007545 ORTHO05D009579 3.5e-12 77.0 50 60.0
Rhsim10G0178600 Rhododendron simsii HOM05D007545 ORTHO05D009579 3.5e-12 77.0 51 60.8
RcHm_v2.0_Chr3g0491601 Rosa chinensis HOM05D007545 ORTHO05D009579 7.9e-12 75.9 48 64.6
QL08p020033 Quercus lobata HOM05D007545 ORTHO05D009579 1.3e-11 75.1 45 71.1
CiPaw.03G073600 Carya illinoinensis HOM05D007545 ORTHO05D009579 1.5e-10 71.6 33 87.9
QL05p016537 Quercus lobata HOM05D007545 ORTHO05D009579 1.5e-10 71.6 45 68.9
Sabra17G0109500 Salix brachista HOM05D007545 ORTHO05D009579 1.5e-10 71.6 48 64.6
COL.COLO4_13423 Corchorus olitorius HOM05D007545 ORTHO05D009579 1.9e-10 71.2 51 58.8
Eucgr.F02875 Eucalyptus grandis HOM05D007545 ORTHO05D009579 1.9e-10 71.2 51 56.9
Manes.01G119900 Manihot esculenta HOM05D007545 ORTHO05D009579 1.9e-10 71.2 51 58.8
Potri.017G131400 Populus trichocarpa HOM05D007545 ORTHO05D009579 1.9e-10 71.2 48 64.6
THA.LOC104805633 Tarenaya hassleriana HOM05D007545 ORTHO05D009579 1.9e-10 71.2 51 58.8
Ciclev10011347m.g Citrus clementina HOM05D007545 ORTHO05D009579 2.5e-10 70.9 50 60.0
Aa31LG1G5330 Aethionema arabicum HOM05D007545 ORTHO05D009579 3.3e-10 70.5 51 60.8
Gohir.D08G049200 Gossypium hirsutum HOM05D007545 ORTHO05D009579 3.3e-10 70.5 51 58.8
ClCG05G010640 Citrullus lanatus HOM05D007545 ORTHO05D009579 4.3e-10 70.1 50 60.0
TAR371G0190 Trochodendron aralioides HOM05D007545 ORTHO05D009579 4.3e-10 70.1 32 93.8
LjContig00141g0003453 Lotus japonicus HOM05D007545 ORTHO05D009579 7.4e-10 69.3 51 56.9
Haze_14281 Corylus avellana HOM05D007545 ORTHO05D009579 9.6e-10 68.9 35 80.0
PGR004G2599 Punica granatum HOM05D007545 ORTHO05D009579 1.6e-09 68.2 49 59.2
A06p06360 Brassica napus HOM05D007545 ORTHO05D009579 2.1e-09 67.8 51 58.8
BraA06t23847Z Brassica rapa HOM05D007545 ORTHO05D009579 2.1e-09 67.8 51 58.8
Thhalv10007116m.g Eutrema salsugineum HOM05D007545 ORTHO05D009579 2.1e-09 67.8 51 60.8
FAN26G0753 Fragaria x ananassa HOM05D007545 ORTHO05D009579 2.8e-09 67.4 53 56.6
Carub.0001s0902 Capsella rubella HOM05D007545 ORTHO05D009579 3.7e-09 67.0 51 56.9
Gorai.004G048700 Gossypium raimondii HOM05D007545 ORTHO05D009579 4.8e-09 66.6 50 56.0
Nitab4.5_0005124g0010 Nicotiana tabacum HOM05D007545 ORTHO05D009579 4.8e-09 66.6 52 55.8
PSO478G2209 Papaver somniferum HOM05D007545 ORTHO05D009579 4.8e-09 66.6 49 55.1
HanXRQChr14g0457331 Helianthus annuus HOM05D007545 ORTHO05D009579 6.2e-09 66.2 51 51.0
AT1G09680 Arabidopsis thaliana HOM05D007545 ORTHO05D009579 8.2e-09 65.9 51 56.9
CARHR009650 Cardamine hirsuta HOM05D007545 ORTHO05D009579 8.2e-09 65.9 51 56.9
Cfa007791 Carpinus fangiana HOM05D007545 ORTHO05D009579 1.1e-08 65.5 33 78.8
MELO3C032020.2 Cucumis melo HOM05D007545 ORTHO05D009579 1.1e-08 65.5 47 59.6
Nitab4.5_0004239g0030 Nicotiana tabacum HOM05D007545 ORTHO05D009579 1.1e-08 65.5 51 56.9
AL1G20230 Arabidopsis lyrata HOM05D007545 ORTHO05D009579 1.4e-08 65.1 51 56.9
CAN.G222.58 Capsicum annuum HOM05D007545 ORTHO05D009579 1.4e-08 65.1 48 60.4
Ca_05835_v3 Cicer arietinum L. HOM05D007545 ORTHO05D009579 1.4e-08 65.1 51 52.9
Hund13089 Selenicereus undatus HOM05D007545 ORTHO05D009579 1.4e-08 65.1 51 54.9
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 1.8e-08 64.7 47 53.2
Sp1g08270 Schrenkiella parvula HOM05D001024 ORTHO05D009579 1.8e-08 64.7 51 56.9
C05p07760 Brassica napus HOM05D007545 ORTHO05D009579 2.4e-08 64.3 51 56.9
BolC5t29527H Brassica oleracea HOM05D007545 ORTHO05D009579 2.4e-08 64.3 51 56.9
Nitab4.5_0010123g0020 Nicotiana tabacum HOM05D007545 ORTHO05D009579 2.4e-08 64.3 51 54.9
CANSAT64G1149 Cannabis sativa HOM05D007545 ORTHO05D009579 3.1e-08 63.9 41 65.9
Medtr5g077930 Medicago truncatula HOM05D007545 ORTHO05D009579 3.1e-08 63.9 52 55.8
Solyc11g011410.3 Solanum lycopersicum HOM05D007545 ORTHO05D009579 3.1e-08 63.9 51 54.9
FAN19G0914 Fragaria x ananassa HOM05D007545 ORTHO05D009579 4.0e-08 63.5 53 50.9
Nitab4.5_0001088g0020 Nicotiana tabacum HOM05D007545 ORTHO05D009579 4.0e-08 63.5 48 58.3
Sed0020460 Sechium edule HOM05D007545 ORTHO05D009579 9.0e-08 62.4 48 56.2
Nitab4.5_0001650g0140 Nicotiana tabacum HOM05D007545 ORTHO05D009579 1.5e-07 61.6 47 57.4
Oeu030299.1 Olea europaea HOM05D007545 ORTHO05D009579 1.5e-07 61.6 48 56.2
Gohir.D11G205366 Gossypium hirsutum HOM05D007545 ORTHO05D009579 2.0e-07 61.2 51 51.0
Gorai.007G220500 Gossypium raimondii HOM05D007545 ORTHO05D009579 2.0e-07 61.2 51 52.9
Psat2g047200 Pisum sativum HOM05D007545 ORTHO05D009579 2.6e-07 60.8 51 52.9
Sed0004069 Sechium edule HOM05D007545 ORTHO05D009579 3.4e-07 60.5 47 55.3
PGSC0003DMG400013237 Solanum tuberosum HOM05D007545 ORTHO05D009579 3.4e-07 60.5 51 51.0
Sopen11g006210 Solanum pennellii HOM05D007545 ORTHO05D009579 4.5e-07 60.1 48 56.2
GSVIVG01030674001 Vitis vinifera HOM05D007545 ORTHO05D009579 4.5e-07 60.1 37 67.6
Glyma.02G243500 Glycine max HOM05D007545 ORTHO05D009579 1.0e-06 58.9 43 53.5
Atru.chr1.1983 Acer truncatum HOM05D007545 ORTHO05D009579 1.3e-06 58.5 50 48.0
Phvul.008G237700 Phaseolus vulgaris HOM05D007545 ORTHO05D009579 1.3e-06 58.5 43 53.5
TPR.G23654 Trifolium pratense HOM05D007545 ORTHO05D009579 1.3e-06 58.5 42 57.1
Peaxi162Scf00562g00002 Petunia axillaris HOM05D007545 ORTHO05D009579 1.7e-06 58.2 48 54.2
MD17G1268500 Malus domestica HOM05D007545 ORTHO05D009579 2.2e-06 57.8 37 75.7
Aqoxy3G04069 Aquilegia oxysepala HOM05D007545 ORTHO05D009579 3.8e-06 57.0 26 88.5
Nitab4.5_0001650g0170 Nicotiana tabacum HOM05D007545 ORTHO05D009579 3.8e-06 57.0 44 56.8


User provided reference genes

Program Settings