Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28169 Davidia involucrata HOM05D011324 ORTHO05D013448 1.0e-81 306.6 148 100.0
Dinv28172 Davidia involucrata HOM05D011324 ORTHO05D013448 1.7e-31 139.8 75 94.7
Dinv28168 Davidia involucrata HOM05D011324 ORTHO05D013448 3.1e-25 119.0 78 80.8
Dinv28164 Davidia involucrata HOM05D011324 ORTHO05D013448 8.9e-25 117.5 75 78.7
Dinv28162 Davidia involucrata HOM05D011324 ORTHO05D013448 7.5e-24 114.4 75 76.0
Dinv28165 Davidia involucrata HOM05D011324 ORTHO05D013448 7.5e-24 114.4 75 76.0
Dinv01717 Davidia involucrata HOM05D011324 ORTHO05D013448 2.3e-20 102.8 75 72.0
Dinv28170 Davidia involucrata HOM05D011324 ORTHO05D013448 2.3e-20 102.8 75 72.0
Dinv26779 Davidia involucrata HOM05D001975 ORTHO05D002436 1.9e-19 99.8 52 92.3
Dinv28167 Davidia involucrata HOM05D011324 ORTHO05D013448 1.2e-18 97.1 73 69.9
Dinv17709 Davidia involucrata HOM05D001975 ORTHO05D002436 1.2e-16 90.5 52 86.5
Dinv39926 Davidia involucrata HOM05D001975 ORTHO05D002436 1.2e-16 90.5 52 86.5
Dinv40999 Davidia involucrata HOM05D001975 ORTHO05D002436 1.2e-16 90.5 52 86.5
Hma1.2p1_0261F.1_g104900 Hydrangea macrophylla HOM05D001975 ORTHO05D002436 1.4e-14 83.6 52 80.8
Haze_15162 Corylus avellana HOM05D001975 ORTHO05D002436 5.4e-14 81.6 52 78.8
Cfa004235 Carpinus fangiana HOM05D001975 ORTHO05D002436 7.1e-14 81.3 52 78.8
CiPaw.01G029500 Carya illinoinensis HOM05D001975 ORTHO05D002436 7.1e-14 81.3 52 80.8
Hma1.2p1_0739F.1_g211260 Hydrangea macrophylla HOM05D001975 ORTHO05D002436 7.1e-14 81.3 52 78.8
QL06p044294 Quercus lobata HOM05D001975 ORTHO05D002436 3.0e-12 75.9 52 75.0
GSVIVG01003772001 Vitis vinifera HOM05D001975 ORTHO05D002436 3.0e-12 75.9 52 73.1
COL.COLO4_22175 Corchorus olitorius HOM05D001975 ORTHO05D002436 3.9e-12 75.5 52 73.1
Nitab4.5_0000090g0130 Nicotiana tabacum HOM05D001975 ORTHO05D002436 3.9e-12 75.5 52 75.0
Nitab4.5_0002126g0080 Nicotiana tabacum HOM05D001975 ORTHO05D002436 3.9e-12 75.5 52 75.0
TAR628G0941 Trochodendron aralioides HOM05D001975 ORTHO05D002436 5.1e-12 75.1 52 73.1
Cpa.g.sc15.57 Carica papaya HOM05D001975 ORTHO05D002436 6.6e-12 74.7 52 75.0
Oeu032915.1 Olea europaea HOM05D001975 ORTHO05D002436 6.6e-12 74.7 52 73.1
CAN.G93.3 Capsicum annuum HOM05D001975 ORTHO05D002436 1.5e-11 73.6 58 67.2
TAR628G0364 Trochodendron aralioides HOM05D001975 ORTHO05D002436 1.9e-11 73.2 51 72.5
Sopen02g015590 Solanum pennellii HOM05D001975 ORTHO05D002436 2.5e-11 72.8 58 67.2
Thecc.01G045400 Theobroma cacao HOM05D001975 ORTHO05D002436 2.5e-11 72.8 52 71.2
CiPaw.02G013300 Carya illinoinensis HOM05D001975 ORTHO05D002436 3.3e-11 72.4 52 71.2
TWI09G0311 Tripterygium wilfordii HOM05D001975 ORTHO05D002436 3.3e-11 72.4 52 71.2
FAN28G2057 Fragaria x ananassa HOM05D001975 ORTHO05D002436 4.3e-11 72.0 53 73.6
TAR381G0758 Trochodendron aralioides HOM05D001821 ORTHO05D001778 4.3e-11 72.0 52 71.2
Eucgr.I01024 Eucalyptus grandis HOM05D001975 ORTHO05D002436 5.6e-11 71.6 52 69.2
Duzib187G0124 Durio zibethinus HOM05D001975 ORTHO05D002436 7.3e-11 71.2 52 69.2
Solyc02g065380.3 Solanum lycopersicum HOM05D001975 ORTHO05D002436 7.3e-11 71.2 58 65.5
PGSC0003DMG400002745 Solanum tuberosum HOM05D001975 ORTHO05D002436 7.3e-11 71.2 58 65.5
vmacro17878 Vaccinium macrocarpon HOM05D003002 ORTHO05D003583 7.3e-11 71.2 54 72.2
Oeu043820.1 Olea europaea HOM05D006488 ORTHO05D007256 9.5e-11 70.9 52 69.2
FvH4_1g14460 Fragaria vesca HOM05D001975 ORTHO05D002436 1.2e-10 70.5 53 71.7
FAN26G0045 Fragaria x ananassa HOM05D001975 ORTHO05D002436 1.6e-10 70.1 53 71.7
CANSAT01G3111 Cannabis sativa HOM05D001975 ORTHO05D002436 2.1e-10 69.7 52 73.1
FAN19G0813 Fragaria x ananassa HOM05D001975 ORTHO05D002436 2.8e-10 69.3 53 73.6
Prupe.7G145800 Prunus persica HOM05D001975 ORTHO05D002436 2.8e-10 69.3 53 71.7
Lj4C135T10 Lonicera japonica HOM05D001975 ORTHO05D002436 4.7e-10 68.6 52 71.2
RcHm_v2.0_Chr2g0103221 Rosa chinensis HOM05D001975 ORTHO05D002436 4.7e-10 68.6 53 73.6
Peaxi162Scf00019g02116 Petunia axillaris HOM05D001975 ORTHO05D002436 6.2e-10 68.2 53 69.8
FAN23G2823 Fragaria x ananassa HOM05D001975 ORTHO05D002436 1.8e-09 66.6 53 69.8
THA.LOC104807566 Tarenaya hassleriana HOM05D001975 ORTHO05D002436 1.8e-09 66.6 52 65.4
CSS0029243 Camellia sinensis var. sinensis HOM05D001975 ORTHO05D002436 2.4e-09 66.2 49 73.5
Lalb_Chr05g0227141 Lupinus albus HOM05D001975 ORTHO05D002436 2.4e-09 66.2 54 66.7
CARHR160370 Cardamine hirsuta HOM05D001975 ORTHO05D002436 3.1e-09 65.9 53 64.2
Ciclev10026511m.g Citrus clementina HOM05D001975 ORTHO05D002436 3.1e-09 65.9 53 67.9
Cc07_g05360 Coffea canephora HOM05D001975 ORTHO05D002436 3.1e-09 65.9 56 69.6
Migut.H00504 Erythranthe guttata HOM05D001975 ORTHO05D002436 3.1e-09 65.9 52 65.4
Manes.13G132500 Manihot esculenta HOM05D001975 ORTHO05D002436 4.0e-09 65.5 52 63.5
Potri.007G033801 Populus trichocarpa HOM05D001975 ORTHO05D002436 4.0e-09 65.5 53 66.0
AL7G14020 Arabidopsis lyrata HOM05D001975 ORTHO05D002436 5.2e-09 65.1 52 63.5
BcaC01g00435 Brassica carinata HOM05D001975 ORTHO05D002436 5.2e-09 65.1 53 67.9
A08p22470 Brassica napus HOM05D001975 ORTHO05D002436 5.2e-09 65.1 53 67.9
C03p79780 Brassica napus HOM05D001975 ORTHO05D002436 5.2e-09 65.1 53 67.9
BolC3t20225H Brassica oleracea HOM05D001975 ORTHO05D002436 5.2e-09 65.1 53 67.9
BraA08t34202Z Brassica rapa HOM05D001975 ORTHO05D002436 5.2e-09 65.1 53 67.9
Carub.0005s1721 Capsella rubella HOM05D001975 ORTHO05D002436 6.8e-09 64.7 53 60.4
ClCG01G016380 Citrullus lanatus HOM05D001975 ORTHO05D002436 8.9e-09 64.3 52 63.5
PGR119G0580 Punica granatum HOM05D001975 ORTHO05D002436 1.2e-08 63.9 53 64.2
Sabra07G0029500 Salix brachista HOM05D001975 ORTHO05D002436 1.5e-08 63.5 53 64.2
MELO3C007508.2 Cucumis melo HOM05D001975 ORTHO05D002436 2.0e-08 63.2 52 63.5
Glyma.02G061300 Glycine max HOM05D001975 ORTHO05D002436 2.0e-08 63.2 54 61.1
TPR.G11244 Trifolium pratense HOM05D001975 ORTHO05D002436 2.0e-08 63.2 54 63.0
MD15G1273000 Malus domestica HOM05D001975 ORTHO05D002436 2.6e-08 62.8 55 67.3
Oeu020619.1 Olea europaea HOM05D001975 ORTHO05D002436 2.6e-08 62.8 52 65.4
Sp5g11390 Schrenkiella parvula HOM05D001975 ORTHO05D002436 2.6e-08 62.8 55 60.0
Sc16g0001200 Simmondsia chinensis HOM05D001975 ORTHO05D002436 2.6e-08 62.8 51 68.6
CsaV3_6G042690 Cucumis sativus L. HOM05D001975 ORTHO05D002436 3.4e-08 62.4 52 61.5
Thhalv10010733m.g Eutrema salsugineum HOM05D001975 ORTHO05D002436 3.4e-08 62.4 55 60.0
BcaB01g00577 Brassica carinata HOM05D001975 ORTHO05D002436 4.4e-08 62.0 55 60.0
BcaC06g33325 Brassica carinata HOM05D001975 ORTHO05D002436 4.4e-08 62.0 55 60.0
C07p45970 Brassica napus HOM05D001975 ORTHO05D002436 4.4e-08 62.0 55 60.0
BolC7t45116H Brassica oleracea HOM05D001975 ORTHO05D002436 4.4e-08 62.0 55 60.0
CSS0010024 Camellia sinensis var. sinensis HOM05D001975 ORTHO05D002436 4.4e-08 62.0 54 66.7
CARHR245280 Cardamine hirsuta HOM05D001975 ORTHO05D002436 4.4e-08 62.0 53 62.3
Gohir.A11G044900 Gossypium hirsutum HOM05D001975 ORTHO05D002436 4.4e-08 62.0 53 66.0
Gohir.D11G048400 Gossypium hirsutum HOM05D001975 ORTHO05D002436 4.4e-08 62.0 53 66.0
Gorai.007G051900 Gossypium raimondii HOM05D001975 ORTHO05D002436 4.4e-08 62.0 53 66.0
Nn5g29433 Nelumbo nucifera HOM05D001975 ORTHO05D002436 4.4e-08 62.0 51 64.7
Rhsim08G0109600 Rhododendron simsii HOM05D001975 ORTHO05D002436 4.4e-08 62.0 54 68.5
AT3G50830 Arabidopsis thaliana HOM05D001975 ORTHO05D002436 5.8e-08 61.6 53 62.3
THA.LOC104826725 Tarenaya hassleriana HOM05D001975 ORTHO05D002436 5.8e-08 61.6 52 61.5
SGA_v2.0_scaffold204G41630 Striga asiatica HOM05D001975 ORTHO05D002436 7.6e-08 61.2 52 59.6
AUR62027244 Chenopodium quinoa HOM05D001975 ORTHO05D002436 9.9e-08 60.8 53 62.3
HPP92_012491 Vanilla planifolia HOM05D001975 ORTHO05D002436 9.9e-08 60.8 52 55.8
Cc02_g18110 Coffea canephora HOM05D001975 ORTHO05D002436 1.3e-07 60.5 53 58.5
Os03g0767800 Oryza sativa ssp. japonica HOM05D001975 ORTHO05D002436 1.3e-07 60.5 56 57.1
BcaC07g39547 Brassica carinata HOM05D001975 ORTHO05D002436 1.7e-07 60.1 55 58.2
C08p26030 Brassica napus HOM05D001975 ORTHO05D002436 1.7e-07 60.1 55 58.2
BolC8t50221H Brassica oleracea HOM05D001975 ORTHO05D002436 1.7e-07 60.1 55 58.2
Ca_22225_v3 Cicer arietinum L. HOM05D001975 ORTHO05D002436 1.7e-07 60.1 54 61.1
DCAR_010947 Daucus carota HOM05D001975 ORTHO05D002436 1.7e-07 60.1 52 61.5
Lj4g0022775 Lotus japonicus HOM05D001975 ORTHO05D002436 1.7e-07 60.1 54 59.3
Aa31LG4G18950 Aethionema arabicum HOM05D001975 ORTHO05D002436 2.2e-07 59.7 52 59.6
BraA09t39850Z Brassica rapa HOM05D001975 ORTHO05D002436 2.2e-07 59.7 55 58.2
Carub.0007s0341 Capsella rubella HOM05D001975 ORTHO05D002436 2.2e-07 59.7 53 60.4
Thhalv10026271m.g Eutrema salsugineum HOM05D001975 ORTHO05D002436 2.2e-07 59.7 53 60.4
Sp7g34570 Schrenkiella parvula HOM05D001975 ORTHO05D002436 2.2e-07 59.7 53 62.3
SGA_v2.0_scaffold58G20589 Striga asiatica HOM05D001975 ORTHO05D002436 2.2e-07 59.7 52 57.7
AL5G31110 Arabidopsis lyrata HOM05D001975 ORTHO05D002436 2.9e-07 59.3 54 59.3
A09p43930 Brassica napus HOM05D001975 ORTHO05D002436 2.9e-07 59.3 55 58.2
Dinv42104 Davidia involucrata HOM05D001975 ORTHO05D002436 2.9e-07 59.3 52 59.6
Aqoxy6G00961 Aquilegia oxysepala HOM05D001975 ORTHO05D002436 3.8e-07 58.9 52 57.7
A03p47960 Brassica napus HOM05D001975 ORTHO05D002436 3.8e-07 58.9 55 58.2
BraA03t13904Z Brassica rapa HOM05D001975 ORTHO05D002436 3.8e-07 58.9 55 58.2
Glyma.16G143700 Glycine max HOM05D001975 ORTHO05D002436 3.8e-07 58.9 54 57.4
SGA_v2.0_scaffold15G07200 Striga asiatica HOM05D001975 ORTHO05D002436 3.8e-07 58.9 52 57.7
BcaC06g33078 Brassica carinata HOM05D001975 ORTHO05D002436 4.9e-07 58.5 55 56.4
Medtr8g078880 Medicago truncatula HOM05D001975 ORTHO05D002436 8.4e-07 57.8 54 59.3
GSVIVG01031890001 Vitis vinifera HOM05D001975 ORTHO05D002436 8.4e-07 57.8 52 57.7
AT4G37220 Arabidopsis thaliana HOM05D001975 ORTHO05D002436 1.1e-06 57.4 52 57.7
CAN.G322.94 Capsicum annuum HOM05D001975 ORTHO05D002436 1.4e-06 57.0 48 64.6
Manes.12G097300 Manihot esculenta HOM05D001975 ORTHO05D002436 1.4e-06 57.0 52 57.7
MSTRG.2922 Avicennia marina HOM05D001975 ORTHO05D002436 2.4e-06 56.2 53 60.4
Zm00001eb058700 Zea mays HOM05D001975 ORTHO05D002436 2.4e-06 56.2 58 51.7
Aqoxy5G01746 Aquilegia oxysepala HOM05D001975 ORTHO05D002436 3.2e-06 55.8 52 51.9
CDE04G0147 Ceratophyllum demersum HOM05D001975 ORTHO05D002436 3.2e-06 55.8 52 51.9
MBI16_g29180_MAGBIO Magnolia biondii HOM05D001975 ORTHO05D002436 3.2e-06 55.8 52 59.6
MBI16_g36195_MAGBIO Magnolia biondii HOM05D001975 ORTHO05D002436 3.2e-06 55.8 52 59.6
HanXRQChr04g0101111 Helianthus annuus HOM05D001975 ORTHO05D002436 5.4e-06 55.1 51 51.0
Psat4g179320 Pisum sativum HOM05D001975 ORTHO05D002436 5.4e-06 55.1 54 57.4
Duzib248G1406 Durio zibethinus HOM05D001975 ORTHO05D002436 7.1e-06 54.7 52 55.8
Lj7A14T60 Lonicera japonica HOM05D001975 ORTHO05D002436 7.1e-06 54.7 52 57.7
Peaxi162Scf00016g01135 Petunia axillaris HOM05D001975 ORTHO05D002436 7.1e-06 54.7 51 58.8
MSTRG.20118 Avicennia marina HOM05D001975 ORTHO05D002436 9.2e-06 54.3 52 59.6


User provided reference genes

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