Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28162 Davidia involucrata HOM05D011324 ORTHO05D013448 2.9e-133 478.4 218 100.0
Dinv28165 Davidia involucrata HOM05D011324 ORTHO05D013448 4.5e-110 401.4 193 95.9
Dinv28164 Davidia involucrata HOM05D011324 ORTHO05D013448 1.7e-104 382.9 193 90.2
Dinv28170 Davidia involucrata HOM05D011324 ORTHO05D013448 8.9e-98 360.5 193 86.5
Dinv01717 Davidia involucrata HOM05D011324 ORTHO05D013448 2.6e-97 359.0 193 86.0
Dinv28167 Davidia involucrata HOM05D011324 ORTHO05D013448 2.6e-97 359.0 191 86.4
Dinv28172 Davidia involucrata HOM05D011324 ORTHO05D013448 3.5e-86 322.0 194 77.3
Dinv28168 Davidia involucrata HOM05D011324 ORTHO05D013448 2.8e-75 285.8 195 72.3
Dinv28169 Davidia involucrata HOM05D011324 ORTHO05D013448 5.0e-24 115.5 75 76.0
Dinv25052 Davidia involucrata HOM05D011324 ORTHO05D013448 1.7e-19 100.5 153 35.9
CSS0020144 Camellia sinensis var. sinensis HOM05D028518 ORTHO05D013819 2.8e-19 99.8 197 35.5
CSS0042303 Camellia sinensis var. sinensis HOM05D028518 ORTHO05D013819 8.2e-19 98.2 178 34.8
Dinv25049 Davidia involucrata HOM05D011324 ORTHO05D013448 1.1e-18 97.8 156 32.7
Dinv25051 Davidia involucrata HOM05D011324 ORTHO05D013448 1.1e-18 97.8 210 32.9
Rhsim12G0126200 Rhododendron simsii HOM05D010628 ORTHO05D010877 1.1e-18 97.8 183 33.9
Rhsim10G0205100 Rhododendron simsii HOM05D012885 ORTHO05D010877 2.6e-12 76.6 181 27.1
Rhsim10G0208800 Rhododendron simsii HOM05D012885 ORTHO05D010877 7.5e-12 75.1 209 25.4
Rhsim10G0208600 Rhododendron simsii HOM05D012885 ORTHO05D010877 2.2e-11 73.6 214 24.8
CSS0001088 Camellia sinensis var. sinensis HOM05D012885 ORTHO05D010877 2.8e-11 73.2 96 37.5
Cfa014784 Carpinus fangiana HOM05D008391 ORTHO05D009743 1.8e-10 70.5 147 32.0
Rhsim10G0205000 Rhododendron simsii HOM05D012885 ORTHO05D010877 3.1e-10 69.7 164 28.7
QL11p026821 Quercus lobata HOM05D061260 ORTHO05D009743 5.3e-10 68.9 54 50.0
QL11p056498 Quercus lobata HOM05D010066 ORTHO05D009743 5.3e-10 68.9 98 37.8
QL11p050365 Quercus lobata HOM05D010066 ORTHO05D009743 1.2e-09 67.8 139 31.7
COL.COLO4_31291 Corchorus olitorius HOM05D017380 ORTHO05D019049 2.0e-09 67.0 102 39.2
Aqoxy2G03550 Aquilegia oxysepala HOM05D013671 ORTHO05D010877 2.7e-09 66.6 115 30.4
CARHR247150 Cardamine hirsuta HOM05D000249 ORTHO05D000206 2.7e-09 66.6 179 27.9
Cfa007631 Carpinus fangiana HOM05D008391 ORTHO05D009743 3.5e-09 66.2 134 34.3
QL11p019943 Quercus lobata HOM05D010066 ORTHO05D009743 4.5e-09 65.9 153 31.4
QL11p026859 Quercus lobata HOM05D061260 ORTHO05D009743 4.5e-09 65.9 54 48.1
QL11p050245 Quercus lobata HOM05D010066 ORTHO05D009743 4.5e-09 65.9 118 31.4
QL93p0284_0002 Quercus lobata HOM05D010066 ORTHO05D009743 4.5e-09 65.9 118 31.4
CSS0026782 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 5.9e-09 65.5 70 41.4
Cfa014727 Carpinus fangiana HOM05D008391 ORTHO05D009743 7.7e-09 65.1 144 28.5
QL11p003079 Quercus lobata HOM05D010066 ORTHO05D010877 7.7e-09 65.1 69 42.0
Thecc.07G157200 Theobroma cacao HOM05D009781 ORTHO05D011819 7.7e-09 65.1 174 28.2
BolC2t08508H Brassica oleracea HOM05D000249 ORTHO05D000206 1.0e-08 64.7 110 38.2
Thhalv10025324m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.0e-08 64.7 131 35.9
PGR031G1460 Punica granatum HOM05D023452 ORTHO05D019051 1.0e-08 64.7 125 36.8
QL11p003115 Quercus lobata HOM05D010066 ORTHO05D009743 1.0e-08 64.7 112 29.5
SEGI_29572 Sequoiadendron giganteum HOM05D000249 ORTHO05D000206 1.3e-08 64.3 133 29.3
A02p14670 Brassica napus HOM05D000249 ORTHO05D000206 1.7e-08 63.9 158 32.9
Cc07_g16260 Coffea canephora HOM05D000249 ORTHO05D000206 1.7e-08 63.9 110 40.0
Actinidia16043 Actinidia chinensis HOM05D000249 ORTHO05D000206 2.2e-08 63.5 133 31.6
C02p23780 Brassica napus HOM05D000249 ORTHO05D000206 2.2e-08 63.5 110 37.3
Cc07_g16240 Coffea canephora HOM05D000249 ORTHO05D000206 2.9e-08 63.2 137 37.2
PGR031G0854 Punica granatum HOM05D023452 ORTHO05D019051 2.9e-08 63.2 120 34.2
CSS0015882 Camellia sinensis var. sinensis HOM05D012885 ORTHO05D010877 3.8e-08 62.8 118 30.5
CSS0019383 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 3.8e-08 62.8 70 40.0
CANSAT56G3513 Cannabis sativa HOM05D000249 ORTHO05D000206 3.8e-08 62.8 154 31.8
QL02p073240 Quercus lobata HOM05D025100 ORTHO05D010877 3.8e-08 62.8 104 37.5
TAR381G1098 Trochodendron aralioides HOM05D000249 ORTHO05D000206 3.8e-08 62.8 133 33.1
BraA01t00052Z Brassica rapa HOM05D000249 ORTHO05D000206 5.0e-08 62.4 112 30.4
BraA08t33441Z Brassica rapa HOM05D000249 ORTHO05D000206 5.0e-08 62.4 154 31.8
COL.COLO4_11012 Corchorus olitorius HOM05D000249 ORTHO05D000206 5.0e-08 62.4 131 33.6
Rhsim05G0014400 Rhododendron simsii HOM05D012885 ORTHO05D010877 5.0e-08 62.4 141 31.2
BraA02t06534Z Brassica rapa HOM05D000249 ORTHO05D000206 6.5e-08 62.0 157 32.5
QL05p053761 Quercus lobata HOM05D010066 ORTHO05D016816 6.5e-08 62.0 70 37.1
A08p14570 Brassica napus HOM05D000249 ORTHO05D000206 8.5e-08 61.6 91 38.5
BraA08t33443Z Brassica rapa HOM05D000249 ORTHO05D000206 8.5e-08 61.6 91 38.5
CARHR225340 Cardamine hirsuta HOM05D000249 ORTHO05D000206 8.5e-08 61.6 108 37.0
Haze_19938 Corylus avellana HOM05D008391 ORTHO05D009743 8.5e-08 61.6 88 35.2
QL11p050103 Quercus lobata HOM05D010066 ORTHO05D009743 8.5e-08 61.6 87 37.9
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 1.1e-07 61.2 139 31.7
A08p23270 Brassica napus HOM05D000249 ORTHO05D000206 1.1e-07 61.2 124 37.9
Dinv19486 Davidia involucrata HOM05D000249 ORTHO05D000206 1.1e-07 61.2 133 32.3
Nn1g05186 Nelumbo nucifera HOM05D000249 ORTHO05D000206 1.1e-07 61.2 133 30.8
Sp7g29610 Schrenkiella parvula HOM05D000249 ORTHO05D000206 1.1e-07 61.2 101 34.7
Dinv35477 Davidia involucrata HOM05D013363 ORTHO05D015094 1.5e-07 60.8 98 35.7
Lj4P874T30 Lonicera japonica HOM05D000249 ORTHO05D000206 1.5e-07 60.8 136 33.8
Lj4P930T42 Lonicera japonica HOM05D000249 ORTHO05D000206 1.5e-07 60.8 136 33.8
SGA_v2.0_scaffold130G34356 Striga asiatica HOM05D017380 ORTHO05D019049 1.5e-07 60.8 110 35.5
Lalb_Chr08g0238861 Lupinus albus HOM05D000249 ORTHO05D000206 1.9e-07 60.5 111 36.9
PGR031G1231 Punica granatum HOM05D023452 ORTHO05D019051 1.9e-07 60.5 125 32.0
Rhsim05G0013500 Rhododendron simsii HOM05D012885 ORTHO05D010877 1.9e-07 60.5 157 28.7
Rhsim11G0078200 Rhododendron simsii HOM05D012919 ORTHO05D013819 1.9e-07 60.5 94 37.2
C03p82270 Brassica napus HOM05D000249 ORTHO05D000206 2.5e-07 60.1 91 37.4
BolC3t20525H Brassica oleracea HOM05D000249 ORTHO05D000206 2.5e-07 60.1 91 37.4
Carub.0003s0535 Capsella rubella HOM05D000249 ORTHO05D014429 2.5e-07 60.1 99 40.4
Dinv34884 Davidia involucrata HOM05D010628 ORTHO05D010877 2.5e-07 60.1 169 29.0
Duzib264G0155 Durio zibethinus HOM05D029922 ORTHO05D035097 2.5e-07 60.1 106 31.1
Duzib264G0667 Durio zibethinus HOM05D029922 ORTHO05D035097 2.5e-07 60.1 106 31.1
QL11p055392 Quercus lobata HOM05D010066 ORTHO05D009743 2.5e-07 60.1 93 34.4
Rhsim09G0114300 Rhododendron simsii HOM05D012919 ORTHO05D013819 2.5e-07 60.1 156 30.1
Sabra07G0068100 Salix brachista HOM05D000249 ORTHO05D000206 2.5e-07 60.1 117 35.9
A10p31990 Brassica napus HOM05D000249 ORTHO05D000206 3.2e-07 59.7 107 34.6
C02p09060 Brassica napus HOM05D000249 ORTHO05D000206 3.2e-07 59.7 112 33.9
BraA08t34282Z Brassica rapa HOM05D000249 ORTHO05D000206 3.2e-07 59.7 122 36.9
CANSAT01G1486 Cannabis sativa HOM05D000249 ORTHO05D000206 3.2e-07 59.7 156 30.8
Dinv35632 Davidia involucrata HOM05D013363 ORTHO05D015094 3.2e-07 59.7 98 34.7
Dinv35658 Davidia involucrata HOM05D013363 ORTHO05D015094 3.2e-07 59.7 102 34.3
C05p04170 Brassica napus HOM05D000249 ORTHO05D000206 4.2e-07 59.3 116 34.5
BolC5t29192H Brassica oleracea HOM05D000249 ORTHO05D000206 4.2e-07 59.3 116 34.5
BraA10t45243Z Brassica rapa HOM05D000249 ORTHO05D000206 4.2e-07 59.3 107 34.6
Dinv35631 Davidia involucrata HOM05D013363 ORTHO05D015094 4.2e-07 59.3 131 30.5
TWI74G1430 Tripterygium wilfordii HOM05D000249 ORTHO05D000206 4.2e-07 59.3 98 38.8
AT3G46050 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 5.5e-07 58.9 124 28.2
AT4G39756 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 5.5e-07 58.9 75 36.0
CANSAT56G2419 Cannabis sativa HOM05D000249 ORTHO05D000206 5.5e-07 58.9 157 31.8
Ca_16893_v3 Cicer arietinum L. HOM05D000249 ORTHO05D000206 5.5e-07 58.9 131 33.6
PGSC0003DMG400016578 Solanum tuberosum HOM05D000249 ORTHO05D000206 5.5e-07 58.9 133 33.1
BcaNung00897 Brassica carinata HOM05D000249 ORTHO05D000206 7.2e-07 58.5 85 38.8
A01p00630 Brassica napus HOM05D000249 ORTHO05D000206 7.2e-07 58.5 51 51.0
BraA01t00071Z Brassica rapa HOM05D000249 ORTHO05D000206 7.2e-07 58.5 51 51.0
BraA01t00608Z Brassica rapa HOM05D000249 ORTHO05D000206 7.2e-07 58.5 98 31.6
Dinv35802 Davidia involucrata HOM05D013363 ORTHO05D015094 7.2e-07 58.5 119 29.4
Duzib264G0671 Durio zibethinus HOM05D029922 ORTHO05D035097 7.2e-07 58.5 106 31.1
Migut.H02437 Erythranthe guttata HOM05D000249 ORTHO05D000206 7.2e-07 58.5 99 36.4
AL7G11960 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 9.4e-07 58.2 76 36.8
CARHR132630 Cardamine hirsuta HOM05D000249 ORTHO05D000206 9.4e-07 58.2 101 37.6
Atru.chr12.1168 Acer truncatum HOM05D000249 ORTHO05D000206 1.2e-06 57.8 98 36.7
BolC9t60010H Brassica oleracea HOM05D000249 ORTHO05D000206 1.2e-06 57.8 93 39.8
Lj1g0013672 Lotus japonicus HOM05D000249 ORTHO05D000206 1.2e-06 57.8 106 34.0
CiPaw.03G134300 Carya illinoinensis HOM05D000249 ORTHO05D000206 1.6e-06 57.4 99 38.4
Nitab4.5_0000904g0030 Nicotiana tabacum HOM05D000249 ORTHO05D000206 1.6e-06 57.4 133 33.8
Sp1g30040 Schrenkiella parvula HOM05D000249 ORTHO05D000206 1.6e-06 57.4 132 31.1
Sopen04g023200 Solanum pennellii HOM05D000249 ORTHO05D000206 1.6e-06 57.4 133 31.6
arahy.Tifrunner.gnm1.ann1.F06NHS Arachis hypogaea HOM05D000249 ORTHO05D000206 2.1e-06 57.0 117 36.8
arahy.Tifrunner.gnm1.ann1.UKW8RL Arachis hypogaea HOM05D000249 ORTHO05D000206 2.1e-06 57.0 117 36.8
BcaB05g24281 Brassica carinata HOM05D000249 ORTHO05D000206 2.1e-06 57.0 106 37.7
BcaC06g35641 Brassica carinata HOM05D000249 ORTHO05D000206 2.1e-06 57.0 117 33.3
A01p06470 Brassica napus HOM05D000249 ORTHO05D000206 2.1e-06 57.0 98 32.7
CSS0014054 Camellia sinensis var. sinensis HOM05D028518 ORTHO05D013819 2.1e-06 57.0 91 37.4
Dinv35834 Davidia involucrata HOM05D013363 ORTHO05D015094 2.1e-06 57.0 119 31.1
Rhsim03G0231000 Rhododendron simsii HOM05D018081 ORTHO05D026100 2.1e-06 57.0 110 31.8
C01p00770 Brassica napus HOM05D000249 ORTHO05D000206 2.7e-06 56.6 51 51.0
BolC1t00079H Brassica oleracea HOM05D000249 ORTHO05D000206 2.7e-06 56.6 51 51.0
Carub.0007s0144 Capsella rubella HOM05D000249 ORTHO05D000206 2.7e-06 56.6 92 37.0
PGR004G0795 Punica granatum HOM05D000249 ORTHO05D000206 2.7e-06 56.6 99 36.4
Rhsim10G0134800 Rhododendron simsii HOM05D005276 ORTHO05D339721 2.7e-06 56.6 86 34.9
A01p00450 Brassica napus HOM05D000249 ORTHO05D000206 3.6e-06 56.2 114 28.9
Solyc04g051870.3 Solanum lycopersicum HOM05D000249 ORTHO05D000206 3.6e-06 56.2 133 30.8
AL6G47530 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 4.7e-06 55.8 77 41.6
A10p12790 Brassica napus HOM05D000249 ORTHO05D000206 4.7e-06 55.8 125 34.4
AT5G03000 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 6.1e-06 55.5 143 30.1
BcaC06g32117 Brassica carinata HOM05D000249 ORTHO05D000206 6.1e-06 55.5 85 38.8
BcaC06g35639 Brassica carinata HOM05D000249 ORTHO05D000206 6.1e-06 55.5 97 36.1
C01p27570 Brassica napus HOM05D000249 ORTHO05D000206 6.1e-06 55.5 124 31.5
C07p12660 Brassica napus HOM05D000249 ORTHO05D000206 6.1e-06 55.5 97 36.1
C09p72710 Brassica napus HOM05D000249 ORTHO05D000206 6.1e-06 55.5 85 38.8
BolC7t41748H Brassica oleracea HOM05D000249 ORTHO05D000206 6.1e-06 55.5 97 36.1
C07p12690 Brassica napus HOM05D000249 ORTHO05D000206 8.0e-06 55.1 94 37.2
Carub.0006s0178 Capsella rubella HOM05D000249 ORTHO05D000206 8.0e-06 55.1 70 37.1


User provided reference genes

Program Settings