Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 3.2e-150 535.0 265 100.0
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 3.7e-98 362.1 249 76.3
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 6.3e-98 361.3 249 75.5
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 3.0e-92 342.4 249 68.7
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 5.2e-92 341.7 249 72.7
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 2.6e-91 339.3 254 67.7
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 5.7e-91 338.2 249 70.7
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 9.8e-91 337.4 249 69.9
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 1.8e-89 333.2 249 70.3
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 4.1e-89 332.0 249 68.7
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 2.7e-88 329.3 249 67.9
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 3.5e-88 328.9 252 68.7
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 1.9e-86 323.2 249 67.1
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 4.3e-86 322.0 249 64.7
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.6e-85 318.9 266 63.9
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.6e-85 318.9 249 66.7
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 3.6e-85 318.9 249 66.7
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 3.6e-85 318.9 249 67.5
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 4.7e-85 318.5 250 67.6
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 4.7e-85 318.5 249 64.3
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 8.0e-85 317.8 249 67.5
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 1.8e-84 316.6 249 63.9
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.3e-84 316.2 260 63.8
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.3e-84 316.2 249 65.9
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 8.9e-84 314.3 249 65.5
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 1.2e-83 313.9 249 63.9
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 2.0e-83 313.2 249 66.7
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 2.0e-83 313.2 250 66.0
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 9.8e-83 310.8 250 64.8
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 1.3e-82 310.5 248 64.5
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.9e-82 309.3 249 65.1
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 3.7e-82 308.9 251 65.3
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 4.9e-82 308.5 249 65.5
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 6.4e-82 308.1 249 63.9
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 2.4e-81 306.2 249 63.5
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 5.4e-81 305.1 249 66.3
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 7.0e-81 304.7 249 65.9
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 9.2e-81 304.3 249 64.3
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 3.5e-80 302.4 248 63.3
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.0e-79 300.8 250 64.4
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 5.0e-79 298.5 247 64.0
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 4.3e-78 295.4 249 61.8
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 5.6e-78 295.0 249 62.7
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 1.6e-77 293.5 249 63.5
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 2.1e-77 293.1 250 63.2
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 2.3e-76 289.7 250 62.4
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 5.2e-76 288.5 251 59.8
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 6.8e-76 288.1 243 64.6
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 6.8e-76 288.1 266 58.3
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 8.9e-76 287.7 250 60.4
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 3.4e-75 285.8 253 63.2
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 4.4e-75 285.4 224 64.3
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 5.8e-75 285.0 249 61.0
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 9.8e-75 284.3 266 57.5
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 3.7e-74 282.3 249 61.0
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 1.1e-73 280.8 256 59.8
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 2.4e-73 279.6 203 70.4
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 3.2e-73 279.3 249 60.6
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 7.0e-73 278.1 250 60.8
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 7.0e-73 278.1 250 61.2
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 9.2e-73 277.7 251 58.2
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 1.2e-72 277.3 249 59.0
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 6.0e-72 275.0 185 74.1
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 7.8e-72 274.6 249 59.8
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 7.8e-72 274.6 252 61.1
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 3.9e-71 272.3 195 71.3
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 5.1e-71 271.9 250 60.4
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 1.5e-70 270.4 249 60.2
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 1.9e-70 270.0 248 58.9
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 4.3e-70 268.9 249 58.2
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 9.5e-70 267.7 263 57.4
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 2.1e-69 266.5 249 60.2
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 8.1e-69 264.6 251 58.6
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 1.1e-68 264.2 248 56.9
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.8e-68 263.5 250 60.8
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 1.8e-68 263.5 250 58.4
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 2.3e-68 263.1 251 55.8
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 5.2e-68 261.9 257 55.6
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.5e-67 260.4 255 56.1
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 1.5e-67 260.4 255 56.1
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 2.0e-67 260.0 250 56.0
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 9.9e-67 257.7 250 56.0
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 9.9e-67 257.7 251 56.6
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 1.3e-66 257.3 250 56.0
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.3e-66 257.3 250 56.0
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 1.7e-66 256.9 250 56.8
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 3.7e-66 255.8 257 55.3
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 3.7e-66 255.8 250 56.0
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 8.3e-66 254.6 270 54.1
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 1.6e-64 250.4 256 55.1
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 4.6e-64 248.8 247 57.1
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 1.3e-63 247.3 175 68.0
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.3e-63 246.5 238 56.7
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 3.3e-62 242.7 252 55.2
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 9.5e-62 241.1 249 51.8
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 3.6e-61 239.2 197 62.9
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 3.8e-58 229.2 271 51.7
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.5e-56 222.6 205 60.5
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 3.9e-55 219.2 255 51.8
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 1.1e-54 217.6 261 50.6
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 1.5e-54 217.2 255 51.4
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 1.5e-54 217.2 255 51.0
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 2.5e-54 216.5 235 52.8
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 5.6e-54 215.3 251 51.8
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 2.4e-52 209.9 272 45.2
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.2e-51 207.6 257 50.6
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 9.9e-51 204.5 250 48.0
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 2.7e-48 196.4 199 53.3
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 3.6e-45 186.0 249 47.4
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 3.6e-45 186.0 181 53.0
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.1e-44 183.0 206 53.9
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.1e-44 183.0 206 53.9
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 9.0e-44 181.4 139 64.0
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 2.6e-43 179.9 160 60.6
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 3.4e-43 179.5 126 69.8
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 7.1e-41 171.8 188 54.8
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 7.1e-41 171.8 139 63.3
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 7.9e-40 168.3 195 47.2
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 3.0e-39 166.4 187 48.7
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 1.1e-38 164.5 169 50.3
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.5e-38 164.1 249 43.8
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.8e-35 152.1 173 48.0
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.7e-34 150.6 154 55.2
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 2.2e-34 150.2 196 43.4
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 2.5e-33 146.7 162 48.8
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.5e-33 145.6 214 43.5
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 1.0e-31 141.4 86 81.4
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.3e-31 140.2 249 39.0
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 1.4e-28 131.0 129 58.1
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 1.8e-28 130.6 161 44.7
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 9.0e-28 128.3 89 70.8
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 2.6e-27 126.7 171 45.0
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 3.4e-27 126.3 160 46.2
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 1.4e-25 120.9 78 75.6
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 6.1e-24 115.5 74 77.0
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 2.5e-22 110.2 167 38.9
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 6.3e-21 105.5 134 50.0
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 4.6e-16 89.4 77 59.7
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 1.0e-15 88.2 62 67.7
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 8.2e-13 78.6 167 28.7
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 2.2e-10 70.5 86 48.8
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 2.9e-10 70.1 36 88.9
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 2.6e-06 57.0 31 77.4
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 5.7e-06 55.8 186 28.0


User provided reference genes

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