Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 1.0e-123 446.8 231 100.0
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 6.1e-113 411.0 222 93.2
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 2.4e-109 399.1 222 89.6
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 2.2e-107 392.5 222 88.3
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 2.9e-107 392.1 222 87.8
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 1.1e-106 390.2 222 88.7
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 3.2e-106 388.7 224 85.3
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 5.5e-106 387.9 222 87.8
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 9.4e-106 387.1 222 86.5
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 1.2e-105 386.7 222 86.0
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 1.6e-105 386.3 222 86.9
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 2.1e-105 386.0 222 86.0
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 2.7e-105 385.6 224 85.3
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 3.6e-105 385.2 222 86.0
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 6.1e-105 384.4 224 84.8
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 1.8e-104 382.9 224 84.4
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 3.9e-104 381.7 222 85.6
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 5.2e-104 381.3 227 83.7
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 6.7e-104 380.9 222 85.6
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 6.7e-104 380.9 222 85.6
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 1.1e-103 380.2 222 85.1
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 1.5e-103 379.8 222 84.7
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 2.0e-103 379.4 222 85.1
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 2.0e-103 379.4 222 84.2
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 2.0e-103 379.4 222 84.2
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 2.6e-103 379.0 224 83.9
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 2.6e-103 379.0 222 86.5
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 3.3e-103 378.6 222 83.3
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 5.7e-103 377.9 223 83.9
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 1.3e-102 376.7 222 84.7
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 2.8e-102 375.6 222 84.2
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 4.8e-102 374.8 222 84.7
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 6.3e-102 374.4 222 82.9
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 6.3e-102 374.4 222 82.9
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.1e-101 373.6 222 83.3
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 1.1e-101 373.6 222 83.3
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 1.4e-101 373.2 222 85.1
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 1.4e-101 373.2 222 84.7
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.4e-101 372.5 224 82.1
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 2.4e-101 372.5 224 82.1
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 3.1e-101 372.1 224 82.1
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 4.1e-101 371.7 222 83.3
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 4.1e-101 371.7 222 83.8
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 5.3e-101 371.3 222 82.9
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 5.3e-101 371.3 222 82.4
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 7.0e-101 370.9 222 83.8
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 9.1e-101 370.5 222 82.9
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 1.6e-100 369.8 222 82.4
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 4.5e-100 368.2 222 83.3
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 7.7e-100 367.5 222 81.5
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 7.7e-100 367.5 222 79.7
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 1.0e-99 367.1 224 79.5
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.0e-99 367.1 222 82.0
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 1.0e-99 367.1 269 72.1
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.0e-99 367.1 222 82.4
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.3e-99 366.7 222 82.4
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 1.3e-99 366.7 222 79.3
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 1.7e-99 366.3 222 81.5
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 1.7e-99 366.3 222 81.5
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.7e-99 366.3 222 82.0
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.2e-99 365.9 222 81.5
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 2.2e-99 365.9 222 81.1
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 2.9e-99 365.5 222 81.1
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 2.9e-99 365.5 223 80.3
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 3.8e-99 365.2 222 81.1
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 6.5e-99 364.4 222 81.1
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 6.5e-99 364.4 222 81.1
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 6.5e-99 364.4 222 81.1
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 6.5e-99 364.4 222 81.1
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 6.5e-99 364.4 222 81.1
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 1.1e-98 363.6 222 79.7
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 1.1e-98 363.6 223 80.3
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 1.5e-98 363.2 222 81.5
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 3.2e-98 362.1 222 81.1
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 3.2e-98 362.1 223 79.8
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 9.4e-98 360.5 244 77.0
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 9.4e-98 360.5 222 80.2
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.6e-97 358.6 224 80.8
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 6.1e-97 357.8 222 79.7
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 1.0e-96 357.1 222 77.9
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 1.4e-96 356.7 222 79.7
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 1.4e-96 356.7 222 79.7
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 1.8e-96 356.3 234 76.9
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 4.0e-96 355.1 222 79.3
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 8.8e-96 354.0 222 77.0
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 2.6e-95 352.4 222 77.0
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 4.4e-95 351.7 222 79.7
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 4.4e-95 351.7 214 82.2
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 9.7e-95 350.5 234 76.1
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.3e-94 350.1 222 77.9
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 2.2e-94 349.4 228 76.3
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 2.2e-91 339.3 235 71.9
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 3.8e-91 338.6 260 71.2
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 3.2e-90 335.5 204 83.3
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 1.0e-88 330.5 222 73.4
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 2.6e-87 325.9 292 61.3
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 5.4e-85 318.2 222 70.7
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.2e-84 317.0 192 82.3
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 2.0e-84 316.2 218 72.9
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 4.5e-84 315.1 187 83.4
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 1.4e-80 303.5 169 91.1
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 2.3e-80 302.8 185 79.5
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 1.2e-79 300.4 219 72.6
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 3.7e-78 295.4 279 59.1
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 3.5e-76 288.9 222 66.7
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 2.9e-75 285.8 223 67.3
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 1.1e-74 283.9 169 84.6
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 3.3e-74 282.3 222 68.0
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.8e-72 276.6 222 65.3
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 1.8e-72 276.6 225 66.7
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 7.5e-71 271.2 222 64.9
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 3.3e-66 255.8 263 53.6
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 5.6e-66 255.0 169 77.5
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 9.2e-61 237.7 140 84.3
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 1.4e-53 213.8 144 77.8
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 4.6e-52 208.8 232 47.0
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 1.7e-51 206.8 144 68.1
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 3.0e-51 206.1 219 54.8
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 3.0e-51 206.1 126 80.2
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 6.8e-48 194.9 192 56.2
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 4.4e-47 192.2 149 69.1
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 4.0e-40 169.1 195 43.1
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 4.4e-39 165.6 222 47.3
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.9e-37 160.2 152 56.6
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 1.9e-37 160.2 126 62.7
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 4.6e-36 155.6 170 54.7
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 2.5e-34 149.8 126 62.7
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 4.5e-31 139.0 113 65.5
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 6.4e-30 135.2 74 90.5
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 1.8e-27 127.1 79 77.2
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 1.1e-24 117.9 268 30.6
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 1.1e-24 117.9 130 46.9
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 1.1e-24 117.9 255 31.4
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 9.9e-23 111.3 266 29.3
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 2.2e-22 110.2 60 91.7
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 4.2e-21 105.9 73 69.9
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 1.1e-08 64.7 42 64.3
MD01G1007700 Malus domestica HOM05D005314 ORTHO05D246798 6.5e-06 55.5 31 83.9


User provided reference genes

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