Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 1.8e-105 386.0 195 100.0
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 6.3e-95 350.9 195 92.3
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 8.5e-92 340.5 197 85.8
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 1.5e-91 339.7 199 87.9
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.5e-91 339.0 198 86.9
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.2e-91 338.6 196 87.2
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 6.1e-90 334.3 197 85.3
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 1.4e-89 333.2 200 87.5
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 4.0e-89 331.6 197 85.8
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 5.2e-89 331.3 197 85.3
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.2e-88 330.1 198 84.8
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.5e-88 329.7 201 85.6
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 2.0e-88 329.3 197 84.8
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 5.7e-88 327.8 195 84.6
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 5.7e-88 327.8 200 84.5
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 5.7e-88 327.8 200 84.5
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 7.5e-88 327.4 201 83.1
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 1.3e-87 326.6 195 84.1
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.7e-87 326.2 198 83.8
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.7e-87 326.2 199 81.9
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.7e-87 326.2 201 85.1
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 1.7e-87 326.2 199 84.4
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 2.2e-87 325.9 197 81.7
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 4.8e-87 324.7 198 85.9
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 1.4e-86 323.2 196 85.2
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.4e-86 322.4 201 82.6
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 3.1e-86 322.0 197 81.7
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 4.1e-86 321.6 197 82.7
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 5.3e-86 321.2 197 83.2
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 7.0e-86 320.9 196 82.7
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 7.0e-86 320.9 195 82.6
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 9.1e-86 320.5 203 81.3
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.2e-85 320.1 197 85.8
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 1.2e-85 320.1 194 82.0
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 2.0e-85 319.3 195 82.1
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 3.5e-85 318.5 196 81.6
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 4.5e-85 318.2 203 80.3
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 4.5e-85 318.2 195 81.5
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 5.9e-85 317.8 195 81.5
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 2.9e-84 315.5 196 79.6
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 3.8e-84 315.1 195 80.5
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.8e-84 315.1 196 83.2
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.8e-84 315.1 201 80.6
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 5.0e-84 314.7 196 83.2
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 5.0e-84 314.7 200 80.0
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 6.5e-84 314.3 195 80.5
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 8.5e-84 313.9 196 79.6
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.1e-83 313.5 197 79.2
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.1e-83 313.5 197 79.2
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.5e-83 313.2 195 80.5
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 1.5e-83 313.2 199 79.4
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.9e-83 312.8 195 80.0
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 1.9e-83 312.8 196 81.6
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 1.9e-83 312.8 195 79.5
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 2.5e-83 312.4 196 80.6
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 7.2e-83 310.8 196 78.6
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 9.4e-83 310.5 195 78.5
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.2e-82 310.1 199 78.9
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.2e-82 310.1 195 79.5
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 2.7e-82 308.9 199 77.9
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 2.7e-82 308.9 199 77.9
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.7e-82 308.9 195 77.9
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 2.7e-82 308.9 196 79.1
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 2.7e-82 308.9 196 80.1
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 3.6e-82 308.5 195 77.9
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 3.6e-82 308.5 195 78.5
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 4.7e-82 308.1 204 76.5
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 8.0e-82 307.4 199 77.9
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 1.4e-81 306.6 198 78.3
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.4e-81 306.6 193 78.8
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.4e-81 306.6 195 76.9
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.8e-81 306.2 195 77.9
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.3e-81 305.8 195 79.0
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 4.0e-81 305.1 195 77.9
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 4.0e-81 305.1 197 81.2
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 5.2e-81 304.7 198 77.3
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 5.2e-81 304.7 195 77.9
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 8.8e-81 303.9 198 77.8
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 8.8e-81 303.9 195 77.4
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.2e-80 303.5 199 76.9
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 1.2e-80 303.5 196 79.6
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.2e-80 303.5 197 77.7
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 2.0e-80 302.8 193 77.2
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 2.0e-80 302.8 199 77.9
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 2.6e-80 302.4 199 76.9
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 2.6e-80 302.4 199 76.9
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.6e-80 302.4 196 78.6
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 2.6e-80 302.4 195 77.4
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 3.4e-80 302.0 195 77.9
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 4.4e-80 301.6 195 76.9
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 7.5e-80 300.8 199 76.4
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.5e-80 300.8 195 76.9
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.5e-80 300.8 195 76.9
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 9.8e-80 300.4 186 82.8
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 1.3e-79 300.1 195 77.9
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.3e-79 300.1 198 75.8
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 1.7e-79 299.7 198 77.8
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 1.7e-79 299.7 195 76.4
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 1.7e-79 299.7 195 76.4
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 2.2e-79 299.3 197 76.1
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.2e-79 299.3 195 76.4
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 3.7e-79 298.5 218 70.6
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 8.3e-79 297.4 199 74.9
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 1.1e-78 297.0 186 79.6
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 1.4e-78 296.6 223 72.6
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 5.4e-78 294.7 195 76.4
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 7.0e-78 294.3 195 75.9
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 9.1e-78 293.9 182 83.5
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.2e-77 293.5 176 83.5
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.2e-77 293.5 203 73.9
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 2.0e-77 292.7 196 77.6
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.5e-77 292.0 207 72.5
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 4.5e-77 291.6 211 71.1
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 4.5e-77 291.6 202 72.3
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 1.3e-76 290.0 195 74.9
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 1.9e-75 286.2 195 75.4
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 2.5e-75 285.8 201 72.1
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 2.5e-75 285.8 211 70.1
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 3.2e-75 285.4 201 72.1
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 5.5e-75 284.6 198 73.7
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 6.1e-74 281.2 178 82.0
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 6.1e-74 281.2 198 71.2
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 1.4e-73 280.0 244 61.9
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.4e-73 280.0 201 73.6
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.8e-73 279.6 193 71.0
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 3.0e-73 278.9 186 76.9
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.1e-70 270.4 196 69.4
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 1.4e-70 270.0 213 70.4
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.2e-69 266.9 176 76.1
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 4.5e-69 265.0 195 70.3
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.3e-68 263.5 187 72.2
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 1.3e-68 263.5 190 68.9
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.7e-68 263.1 204 68.6
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 5.0e-68 261.5 216 64.4
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 2.1e-66 256.1 233 60.5
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 4.7e-66 255.0 201 66.2
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 8.0e-66 254.2 182 73.6
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.0e-65 253.8 186 66.1
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 2.0e-64 249.6 188 64.4
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 5.7e-64 248.1 182 68.1
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 2.3e-60 236.1 177 70.1
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.9e-59 233.0 195 62.6
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 1.2e-56 223.8 153 77.1
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 5.8e-56 221.5 202 62.4
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.4e-49 200.3 118 85.6
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 2.9e-47 192.6 116 81.9
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 7.8e-45 184.5 186 56.5
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 4.0e-41 172.2 100 87.0
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 9.9e-40 167.5 118 77.1
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 2.4e-38 162.9 188 53.7
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 2.7e-37 159.5 106 79.2
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.2e-34 150.6 99 76.8
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 6.4e-31 138.3 80 82.5
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.9e-30 136.7 196 47.4
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.2e-29 134.0 97 72.2
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 4.6e-29 132.1 70 91.4
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.9e-27 126.7 99 68.7
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 9.6e-27 124.4 71 76.1
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 3.4e-24 115.9 63 87.3
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 1.1e-22 110.9 192 39.1
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 1.9e-22 110.2 100 66.0
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 2.3e-20 103.2 61 82.0
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 3.0e-20 102.8 191 37.2
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 3.9e-20 102.4 98 62.2
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 1.5e-19 100.5 73 75.3
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 2.1e-18 96.7 98 60.2
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 5.3e-17 92.0 62 72.6
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 3.8e-15 85.9 69 59.4
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 4.2e-14 82.4 168 35.7
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.6e-13 79.0 51 74.5
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 6.0e-13 78.6 53 73.6
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 4.5e-08 62.4 72 50.0


User provided reference genes

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