Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 6.5e-122 440.7 209 100.0
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 1.8e-71 273.1 169 74.0
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 1.8e-71 273.1 169 74.0
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 1.7e-69 266.5 167 71.3
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 1.7e-69 266.5 167 71.9
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 1.4e-68 263.5 167 70.1
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 2.4e-68 262.7 167 71.3
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 4.1e-68 261.9 167 70.7
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 1.2e-67 260.4 167 71.9
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 1.6e-67 260.0 168 69.6
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 1.6e-67 260.0 167 70.1
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 3.5e-67 258.8 167 70.7
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 4.6e-67 258.5 167 70.1
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 6.0e-67 258.1 167 70.7
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 1.7e-66 256.5 166 67.5
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 2.3e-66 256.1 167 71.3
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 3.0e-66 255.8 167 68.9
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.0e-66 255.8 167 70.1
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 5.0e-66 255.0 167 67.7
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.5e-65 253.4 166 68.1
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 2.5e-65 252.7 167 70.1
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 4.3e-65 251.9 164 68.3
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 5.6e-65 251.5 167 67.7
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 3.6e-64 248.8 167 67.7
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.7e-64 248.4 167 68.3
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.7e-64 248.4 167 68.3
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 4.7e-64 248.4 167 68.3
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 6.2e-64 248.1 167 67.1
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 1.8e-63 246.5 167 67.7
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 1.8e-63 246.5 167 65.9
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 2.3e-63 246.1 167 65.9
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 3.1e-63 245.7 164 66.5
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 4.0e-63 245.4 167 67.7
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 5.2e-63 245.0 167 64.7
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 5.2e-63 245.0 167 64.7
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 6.8e-63 244.6 167 67.1
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 8.9e-63 244.2 167 64.1
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 8.9e-63 244.2 220 55.5
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 2.0e-62 243.0 167 65.3
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 2.0e-62 243.0 167 65.9
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 2.6e-62 242.7 167 66.5
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 3.4e-62 242.3 166 65.7
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 3.4e-62 242.3 167 65.3
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 5.8e-62 241.5 167 65.3
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 5.8e-62 241.5 167 65.3
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 9.8e-62 240.7 167 63.5
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 2.9e-61 239.2 167 62.3
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 1.1e-60 237.3 166 65.1
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 1.4e-60 236.9 167 66.5
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 1.9e-60 236.5 164 63.4
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 2.4e-60 236.1 166 63.3
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 2.4e-60 236.1 164 63.4
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 7.0e-60 234.6 166 64.5
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 1.2e-59 233.8 167 62.9
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 2.7e-59 232.6 168 64.3
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 2.7e-59 232.6 168 64.3
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 4.6e-59 231.9 167 64.1
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 6.0e-59 231.5 164 63.4
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 7.8e-59 231.1 168 63.7
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 7.8e-59 231.1 166 63.3
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.3e-58 230.3 168 63.1
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 1.3e-58 230.3 167 63.5
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 1.7e-58 229.9 168 63.7
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 1.7e-58 229.9 168 63.7
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 1.7e-58 229.9 168 63.7
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 3.9e-58 228.8 202 56.9
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 6.6e-58 228.0 167 62.9
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 6.6e-58 228.0 167 62.9
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 6.6e-58 228.0 168 63.1
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 8.6e-58 227.6 168 63.7
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 8.6e-58 227.6 167 62.3
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 1.1e-57 227.3 166 61.4
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 1.9e-57 226.5 168 62.5
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 2.5e-57 226.1 168 63.1
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 4.3e-57 225.3 168 62.5
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 9.5e-57 224.2 168 61.3
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 2.8e-56 222.6 167 61.1
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 4.7e-56 221.9 178 60.1
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 6.2e-56 221.5 167 61.1
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 6.2e-56 221.5 167 61.1
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 8.1e-56 221.1 167 61.1
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 1.4e-55 220.3 167 58.7
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 8.9e-55 217.6 168 61.9
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.2e-54 217.2 166 59.0
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.2e-54 217.2 166 59.0
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 2.0e-54 216.5 166 59.0
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 2.6e-54 216.1 164 59.8
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 4.4e-54 215.3 203 51.7
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 4.4e-54 215.3 189 56.6
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 7.5e-54 214.5 159 59.1
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 1.7e-53 213.4 167 57.5
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 2.9e-53 212.6 167 55.7
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 6.4e-53 211.5 167 56.9
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 1.2e-51 207.2 167 58.1
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.6e-51 206.8 179 54.7
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 2.7e-51 206.1 168 58.9
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 1.7e-50 203.4 219 47.0
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 1.7e-50 203.4 167 55.1
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 5.1e-50 201.8 166 57.2
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 2.5e-49 199.5 138 64.5
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 9.5e-49 197.6 189 50.3
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 2.4e-47 193.0 189 49.2
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 3.1e-47 192.6 165 56.4
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 3.1e-47 192.6 166 53.6
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 1.2e-46 190.7 167 52.1
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 9.9e-46 187.6 165 52.1
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 2.7e-43 179.5 176 47.7
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.0e-42 177.6 175 49.1
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 8.7e-42 174.5 126 61.1
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 1.5e-41 173.7 127 61.4
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 7.3e-41 171.4 130 58.5
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 9.6e-41 171.0 134 59.7
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.3e-40 170.6 166 50.0
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 4.8e-40 168.7 165 47.9
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 5.3e-39 165.2 167 44.9
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 1.5e-38 163.7 164 49.4
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 2.0e-38 163.3 163 48.5
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 2.0e-38 163.3 166 48.2
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 3.4e-38 162.5 182 46.7
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 7.1e-36 154.8 124 57.3
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 9.3e-36 154.5 97 69.1
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 9.3e-36 154.5 97 69.1
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 1.6e-35 153.7 177 44.6
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 1.7e-34 150.2 130 57.7
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.7e-34 150.2 122 56.6
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 8.1e-32 141.4 98 63.3
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 1.4e-31 140.6 165 44.8
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.4e-31 139.8 140 47.9
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.9e-31 138.3 133 49.6
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.5e-30 137.1 149 47.0
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.6e-30 136.3 138 48.6
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.7e-29 133.7 124 50.0
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 3.8e-29 132.5 165 41.8
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-28 130.6 136 47.1
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 1.1e-25 120.9 97 54.6
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.6e-24 117.1 132 42.4
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 3.1e-23 112.8 147 43.5
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 2.0e-22 110.2 182 37.4
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 2.2e-21 106.7 79 59.5
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 2.9e-21 106.3 128 38.3
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 2.5e-20 103.2 164 36.0
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 4.2e-20 102.4 164 36.6
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 3.3e-17 92.8 114 42.1
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 4.3e-17 92.4 100 49.0
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 3.7e-16 89.4 89 46.1
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 2.3e-10 70.1 166 27.1
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 2.5e-09 66.6 41 68.3
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 4.3e-09 65.9 62 46.8
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 5.7e-09 65.5 47 68.1
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 9.7e-09 64.7 116 30.2
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 4.8e-08 62.4 50 66.0
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.8e-08 62.4 65 47.7
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.3e-07 58.9 64 46.9
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.3e-07 58.9 64 46.9
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.0e-07 58.2 57 49.1
Haze_00845 Corylus avellana HOM05D021883 ORTHO05D034098 1.2e-06 57.8 135 28.9
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.4e-06 56.2 64 46.9
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 7.7e-06 55.1 64 45.3


User provided reference genes

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