Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 1.7e-114 416.0 206 100.0
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 2.2e-82 309.3 206 75.7
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 2.5e-81 305.8 201 74.6
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 8.7e-79 297.4 206 71.4
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 2.4e-76 289.3 206 69.4
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 5.9e-75 284.6 201 71.6
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 3.8e-74 282.0 203 72.9
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 3.2e-73 278.9 201 68.2
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 7.2e-73 277.7 206 66.0
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 1.2e-72 276.9 199 68.8
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 1.0e-71 273.9 188 69.7
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 4.3e-70 268.5 203 70.0
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 9.7e-70 267.3 206 65.5
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 6.3e-69 264.6 188 67.6
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 4.1e-68 261.9 169 75.1
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 1.2e-67 260.4 182 69.2
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 7.7e-67 257.7 206 64.1
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 1.3e-66 256.9 188 66.5
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.3e-66 256.9 189 65.6
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 1.3e-66 256.9 189 65.6
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 1.3e-66 256.9 181 69.6
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 2.9e-66 255.8 200 65.5
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 6.5e-66 254.6 211 62.1
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 6.5e-66 254.6 200 62.5
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 2.5e-65 252.7 206 61.2
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.0e-63 247.3 176 69.9
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 3.0e-63 245.7 192 60.9
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 3.9e-63 245.4 192 63.0
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 3.9e-63 245.4 197 62.9
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 3.9e-63 245.4 198 63.6
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 5.1e-63 245.0 198 63.1
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 4.4e-62 241.9 205 62.0
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 5.7e-62 241.5 280 47.9
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 1.7e-61 240.0 208 61.5
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 8.2e-61 237.7 199 59.8
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 1.8e-60 236.5 206 59.7
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 2.4e-60 236.1 206 56.8
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 4.1e-60 235.3 206 57.3
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 5.3e-60 235.0 207 55.6
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 6.9e-60 234.6 197 58.4
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 1.2e-59 233.8 184 62.0
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 2.0e-59 233.0 194 60.8
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 3.4e-59 232.3 206 58.3
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 4.5e-59 231.9 190 62.6
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 5.9e-59 231.5 206 56.8
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 7.7e-59 231.1 179 62.6
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 1.0e-58 230.7 206 58.7
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 1.3e-58 230.3 206 59.7
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 1.3e-58 230.3 182 64.8
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 2.2e-58 229.6 200 59.0
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 2.9e-58 229.2 191 61.8
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 8.5e-58 227.6 184 64.7
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 1.9e-57 226.5 194 58.2
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 1.9e-57 226.5 199 62.3
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 2.5e-57 226.1 188 61.7
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 2.5e-57 226.1 173 61.8
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 3.2e-57 225.7 206 60.7
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 3.2e-57 225.7 180 65.0
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-56 223.8 198 59.6
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-56 223.8 198 59.6
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-56 223.8 198 59.6
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.6e-56 223.4 209 56.5
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 2.1e-56 223.0 206 57.8
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 3.6e-56 222.2 169 63.9
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 6.1e-56 221.5 199 58.3
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 7.9e-56 221.1 183 61.2
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 1.0e-55 220.7 172 64.5
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.0e-55 220.7 176 63.6
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 3.9e-55 218.8 178 67.4
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 6.7e-55 218.0 156 67.3
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 8.8e-55 217.6 168 66.7
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 1.1e-54 217.2 177 62.1
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 7.4e-54 214.5 170 62.4
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 1.3e-53 213.8 166 66.3
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 2.8e-53 212.6 188 56.4
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 2.8e-53 212.6 163 65.0
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 2.8e-53 212.6 166 63.9
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 8.2e-53 211.1 177 63.3
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.4e-52 209.5 154 66.2
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 3.1e-52 209.1 180 56.1
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.6e-51 206.8 139 69.8
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 2.0e-51 206.5 181 56.9
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.3e-50 203.8 202 51.0
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 1.3e-50 203.8 219 54.3
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 1.7e-50 203.4 184 53.8
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 8.5e-50 201.1 181 58.0
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 5.5e-49 198.4 185 55.1
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 7.2e-49 198.0 180 54.4
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.2e-48 197.2 162 61.1
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.6e-48 196.8 185 54.1
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 4.7e-48 195.3 151 62.3
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 2.3e-47 193.0 180 53.3
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 1.2e-46 190.7 181 54.1
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 2.0e-46 189.9 186 54.3
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 2.6e-46 189.5 119 78.2
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 5.7e-46 188.3 189 52.9
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 2.2e-45 186.4 138 63.0
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.5e-41 173.7 184 51.6
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 2.5e-41 172.9 173 52.0
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 3.6e-40 169.1 153 61.4
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 3.6e-40 169.1 128 64.8
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 1.4e-39 167.2 142 62.0
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 2.3e-39 166.4 173 52.6
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 4.0e-39 165.6 195 48.2
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 5.2e-39 165.2 155 56.8
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 8.8e-39 164.5 196 48.5
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 4.8e-37 158.7 137 57.7
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 1.6e-35 153.7 131 60.3
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 2.7e-35 152.9 147 53.7
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 3.5e-35 152.5 146 53.4
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 5.9e-35 151.8 150 52.0
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 1.1e-33 147.5 182 47.3
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 7.2e-33 144.8 160 52.5
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 1.0e-31 141.0 108 66.7
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 3.0e-31 139.4 106 63.2
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 2.0e-30 136.7 148 55.4
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 4.4e-30 135.6 176 47.2
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 4.4e-30 135.6 176 47.2
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 1.3e-29 134.0 118 60.2
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 1.7e-26 123.6 144 47.2
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 1.1e-25 120.9 140 47.1
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 3.3e-25 119.4 161 39.8
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 4.7e-24 115.5 165 40.6
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.0e-23 114.4 91 60.4
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 3.7e-21 105.9 95 57.9
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 1.7e-18 97.1 84 61.9
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 1.2e-16 90.9 73 60.3
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 1.1e-15 87.8 77 58.4
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.0e-10 71.2 147 38.1
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 5.0e-10 68.9 152 36.8
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.1e-09 67.8 45 68.9
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.5e-09 67.4 65 55.4
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 3.3e-09 66.2 59 52.5
MCO02G048 Micromonas commoda HOM05D005768 ORTHO05D007100 1.8e-07 60.5 179 30.2
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 6.8e-07 58.5 166 31.3
AUR62033068 Chenopodium quinoa HOM05D000002 ORTHO05D000001 9.9e-06 54.7 63 47.6


User provided reference genes

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