Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 4.3e-71 271.2 132 100.0
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 1.0e-19 100.5 77 71.4
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 5.0e-19 98.2 52 90.4
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 6.5e-19 97.8 52 90.4
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 6.5e-19 97.8 52 88.5
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 6.5e-19 97.8 52 88.5
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 6.5e-19 97.8 52 88.5
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 1.4e-18 96.7 52 88.5
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 1.9e-18 96.3 52 88.5
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.9e-18 96.3 52 88.5
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 2.5e-18 95.9 52 88.5
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 2.5e-18 95.9 52 88.5
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 2.5e-18 95.9 52 88.5
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 2.5e-18 95.9 52 90.4
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 3.2e-18 95.5 52 88.5
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 3.2e-18 95.5 50 90.0
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.2e-18 95.5 52 86.5
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.2e-18 95.5 52 86.5
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 3.2e-18 95.5 52 86.5
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 3.2e-18 95.5 52 86.5
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 4.2e-18 95.1 52 86.5
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 4.2e-18 95.1 52 86.5
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 5.5e-18 94.7 52 90.4
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 5.5e-18 94.7 52 84.6
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 9.4e-18 94.0 52 86.5
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 9.4e-18 94.0 52 88.5
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 9.4e-18 94.0 52 88.5
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 1.2e-17 93.6 52 86.5
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 1.2e-17 93.6 52 84.6
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 1.2e-17 93.6 52 86.5
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 1.2e-17 93.6 52 86.5
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.2e-17 93.6 52 84.6
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 1.6e-17 93.2 52 84.6
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 2.1e-17 92.8 52 86.5
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 2.1e-17 92.8 52 86.5
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 2.1e-17 92.8 52 82.7
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 2.1e-17 92.8 52 86.5
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 2.1e-17 92.8 52 86.5
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 2.1e-17 92.8 52 86.5
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 2.1e-17 92.8 52 86.5
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 2.7e-17 92.4 52 84.6
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 2.7e-17 92.4 52 86.5
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 2.7e-17 92.4 52 84.6
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 3.6e-17 92.0 52 82.7
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 3.6e-17 92.0 52 84.6
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 3.6e-17 92.0 52 84.6
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 4.7e-17 91.7 52 82.7
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 4.7e-17 91.7 52 84.6
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 4.7e-17 91.7 52 86.5
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 4.7e-17 91.7 52 84.6
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.7e-17 91.7 52 84.6
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.7e-17 91.7 52 84.6
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.7e-17 91.7 52 84.6
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 4.7e-17 91.7 52 84.6
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 4.7e-17 91.7 52 84.6
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 4.7e-17 91.7 52 84.6
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 4.7e-17 91.7 52 84.6
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 4.7e-17 91.7 52 82.7
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 4.7e-17 91.7 51 86.3
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.0e-16 90.5 52 82.7
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.0e-16 90.5 52 80.8
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 1.0e-16 90.5 52 80.8
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 1.0e-16 90.5 52 84.6
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 1.4e-16 90.1 52 84.6
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.4e-16 90.1 52 82.7
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.8e-16 89.7 52 80.8
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.3e-16 89.4 52 82.7
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 2.3e-16 89.4 52 84.6
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 2.3e-16 89.4 52 84.6
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 2.3e-16 89.4 52 84.6
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 2.3e-16 89.4 52 84.6
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 3.0e-16 89.0 52 82.7
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 3.0e-16 89.0 52 82.7
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 3.0e-16 89.0 52 82.7
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 5.2e-16 88.2 52 82.7
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 5.2e-16 88.2 51 84.3
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 5.2e-16 88.2 52 82.7
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 6.7e-16 87.8 52 80.8
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 8.8e-16 87.4 52 80.8
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 1.1e-15 87.0 52 80.8
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 1.1e-15 87.0 52 80.8
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 1.1e-15 87.0 52 80.8
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 1.1e-15 87.0 52 80.8
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 1.1e-15 87.0 52 80.8
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 1.1e-15 87.0 52 80.8
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 1.1e-15 87.0 52 78.8
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 1.5e-15 86.7 45 93.3
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 1.5e-15 86.7 52 76.9
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 1.5e-15 86.7 52 76.9
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 1.5e-15 86.7 52 80.8
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 2.0e-15 86.3 49 85.7
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 4.4e-15 85.1 86 51.2
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 4.4e-15 85.1 52 76.9
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 4.4e-15 85.1 52 80.8
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 5.7e-15 84.7 52 76.9
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 5.7e-15 84.7 52 76.9
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 5.7e-15 84.7 52 80.8
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 7.4e-15 84.3 52 73.1
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 7.4e-15 84.3 52 78.8
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 9.7e-15 84.0 52 76.9
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 1.3e-14 83.6 52 76.9
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.7e-14 82.0 52 73.1
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 3.7e-14 82.0 50 78.0
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 6.3e-14 81.3 52 75.0
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 6.3e-14 81.3 52 75.0
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 6.3e-14 81.3 52 75.0
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 6.3e-14 81.3 52 75.0
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 6.3e-14 81.3 52 75.0
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 6.3e-14 81.3 52 75.0
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 6.3e-14 81.3 52 75.0
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 1.1e-13 80.5 52 75.0
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.4e-13 80.1 50 74.0
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 1.4e-13 80.1 52 73.1
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 1.8e-13 79.7 52 71.2
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 3.1e-13 79.0 47 80.9
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 5.3e-13 78.2 52 69.2
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 5.3e-13 78.2 52 73.1
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 5.3e-13 78.2 52 73.1
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 7.0e-13 77.8 52 71.2
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 7.0e-13 77.8 52 67.3
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 9.1e-13 77.4 52 71.2
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 9.1e-13 77.4 52 71.2
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 3.5e-12 75.5 52 69.2
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 3.5e-12 75.5 52 67.3
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 3.5e-12 75.5 52 67.3
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 2.2e-11 72.8 52 67.3
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 2.9e-11 72.4 52 67.3
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 2.9e-11 72.4 52 67.3
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 1.5e-10 70.1 52 65.4
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 3.2e-10 68.9 36 86.1
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 3.2e-10 68.9 43 76.7
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 4.2e-10 68.6 52 57.7
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 5.5e-10 68.2 52 61.5
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 7.2e-10 67.8 48 64.6
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 9.4e-10 67.4 40 77.5
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 9.4e-10 67.4 40 77.5
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 2.1e-09 66.2 48 62.5
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 3.6e-09 65.5 36 83.3
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 3.6e-09 65.5 40 70.0
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 4.7e-09 65.1 51 64.7
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 8.0e-09 64.3 36 80.6
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 6.3e-06 54.7 34 70.6


User provided reference genes

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