Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27415 Davidia involucrata HOM05D001046 ORTHO05D005883 0.0e+00 1781.1 913 100.0
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 0.0e+00 1531.9 913 83.6
CSS0000214 Camellia sinensis var. sinensis HOM05D001046 ORTHO05D005883 0.0e+00 1507.3 913 83.8
Lj3C1023G11 Lonicera japonica HOM05D001046 ORTHO05D005883 0.0e+00 1473.0 946 79.9
Actinidia30169 Actinidia chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1465.7 913 82.1
vmacro18368 Vaccinium macrocarpon HOM05D001046 ORTHO05D005883 0.0e+00 1447.2 914 80.6
HanXRQChr15g0475941 Helianthus annuus HOM05D001046 ORTHO05D005883 0.0e+00 1436.8 911 78.4
Rhsim08G0040600 Rhododendron simsii HOM05D001046 ORTHO05D005883 0.0e+00 1422.9 985 75.2
TAR629G1491 Trochodendron aralioides HOM05D001046 ORTHO05D005883 0.0e+00 1419.8 913 79.1
Cfa008799 Carpinus fangiana HOM05D001046 ORTHO05D005883 0.0e+00 1418.7 913 78.3
Solyc05g010160.3 Solanum lycopersicum HOM05D001046 ORTHO05D005883 0.0e+00 1417.9 913 77.1
Prupe.1G300500 Prunus persica HOM05D001046 ORTHO05D005883 0.0e+00 1416.4 909 76.9
Sopen05g005940 Solanum pennellii HOM05D001046 ORTHO05D005883 0.0e+00 1415.2 913 77.1
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 0.0e+00 1414.4 909 76.5
CAN.G184.47 Capsicum annuum HOM05D001046 ORTHO05D005883 0.0e+00 1411.4 913 77.4
Thecc.02G315500 Theobroma cacao HOM05D001046 ORTHO05D005883 0.0e+00 1411.0 913 77.5
FAN12G0380 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1409.8 909 76.2
RcHm_v2.0_Chr4g0436541 Rosa chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1406.0 909 76.2
Duzib248G1558 Durio zibethinus HOM05D001046 ORTHO05D005883 0.0e+00 1404.8 914 77.9
Gohir.A12G157800 Gossypium hirsutum HOM05D001046 ORTHO05D005883 0.0e+00 1401.3 913 77.0
Oeu002624.1 Olea europaea HOM05D001046 ORTHO05D005883 0.0e+00 1401.0 915 77.6
ECA246G0060 Erigeron canadensis HOM05D001046 ORTHO05D005883 0.0e+00 1395.6 912 76.9
Gorai.008G173700 Gossypium raimondii HOM05D001046 ORTHO05D005883 0.0e+00 1394.4 913 76.6
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 0.0e+00 1394.0 914 76.5
Gohir.D12G160700 Gossypium hirsutum HOM05D001046 ORTHO05D005883 0.0e+00 1391.3 911 76.5
Ciclev10030592m.g Citrus clementina HOM05D001046 ORTHO05D005883 0.0e+00 1390.9 912 76.8
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 0.0e+00 1389.4 912 76.4
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 0.0e+00 1389.4 912 76.4
FAN17G2519 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1385.5 907 75.6
Nitab4.5_0006347g0030 Nicotiana tabacum HOM05D001046 ORTHO05D005883 0.0e+00 1383.2 913 76.2
Cc11_g11040 Coffea canephora HOM05D001046 ORTHO05D005883 0.0e+00 1381.3 926 75.6
MD16G1051700 Malus domestica HOM05D001046 ORTHO05D005883 0.0e+00 1381.3 909 75.7
Manes.06G076400 Manihot esculenta HOM05D001046 ORTHO05D005883 0.0e+00 1370.5 922 75.5
Migut.L01124 Erythranthe guttata HOM05D001046 ORTHO05D005883 0.0e+00 1369.8 913 76.3
Potri.T108626 Populus trichocarpa HOM05D001046 ORTHO05D005883 0.0e+00 1365.9 910 75.4
Potri.008G109300 Populus trichocarpa HOM05D001046 ORTHO05D005883 0.0e+00 1362.1 910 75.4
CANSAT64G1908 Cannabis sativa HOM05D001046 ORTHO05D005883 0.0e+00 1356.7 911 74.9
MSTRG.7703 Avicennia marina HOM05D001046 ORTHO05D005883 0.0e+00 1353.2 910 75.5
CiPaw.05G117600 Carya illinoinensis HOM05D001046 ORTHO05D005883 0.0e+00 1351.7 914 75.3
SalBow8G4857 Salvia bowleyana HOM05D001046 ORTHO05D005883 0.0e+00 1349.0 956 71.5
FAN07G2005 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1346.3 909 74.0
AUR62002966 Chenopodium quinoa HOM05D001046 ORTHO05D005883 0.0e+00 1328.2 928 72.0
Medtr0010s0220 Medicago truncatula HOM05D001046 ORTHO05D005883 0.0e+00 1327.8 913 73.7
FAN22G0985 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1324.7 950 71.1
TWI79G0779 Tripterygium wilfordii HOM05D001046 ORTHO05D005883 0.0e+00 1321.6 912 72.8
COL.COLO4_27721 Corchorus olitorius HOM05D001046 ORTHO05D005883 0.0e+00 1318.9 928 74.1
Peaxi162Scf00188g00433 Petunia axillaris HOM05D001046 ORTHO05D005883 0.0e+00 1316.6 926 73.5
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 0.0e+00 1314.7 913 71.9
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 0.0e+00 1312.4 912 73.1
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 0.0e+00 1310.8 912 73.1
Hund25120 Selenicereus undatus HOM05D001046 ORTHO05D005883 0.0e+00 1309.3 908 72.0
Lsat_1_v5_gn_3_62681 Lactuca sativa HOM05D001046 ORTHO05D005883 0.0e+00 1305.8 910 72.4
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 0.0e+00 1303.9 913 72.0
Sc14g0007590 Simmondsia chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1302.3 913 72.0
BcaB03g14057 Brassica carinata HOM05D001046 ORTHO05D005883 0.0e+00 1297.0 913 70.5
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 0.0e+00 1293.5 913 70.4
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 0.0e+00 1293.5 913 70.4
Nitab4.5_0000259g0330 Nicotiana tabacum HOM05D001046 ORTHO05D005883 0.0e+00 1292.3 963 70.1
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 0.0e+00 1290.4 913 70.0
Thhalv10006742m.g Eutrema salsugineum HOM05D001046 ORTHO05D005883 0.0e+00 1288.1 914 69.9
AUR62007774 Chenopodium quinoa HOM05D001046 ORTHO05D005883 0.0e+00 1285.4 912 71.4
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 0.0e+00 1285.0 913 70.1
Carub.0001s2479 Capsella rubella HOM05D001046 ORTHO05D005883 0.0e+00 1280.0 913 69.8
SGA_v2.0_scaffold16G07861 Striga asiatica HOM05D001046 ORTHO05D005883 0.0e+00 1278.8 940 70.5
Eucgr.B03078 Eucalyptus grandis HOM05D001046 ORTHO05D005883 0.0e+00 1275.4 915 71.5
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 0.0e+00 1271.1 914 69.8
Sabra08G0083000 Salix brachista HOM05D001046 ORTHO05D005883 0.0e+00 1268.4 987 67.3
Aqoxy3G00421 Aquilegia oxysepala HOM05D001046 ORTHO05D005883 0.0e+00 1263.1 884 72.5
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 0.0e+00 1262.7 946 67.7
Glyma.01G093902 Glycine max HOM05D001046 ORTHO05D005883 0.0e+00 1259.6 913 70.6
Lalb_Chr04g0255081 Lupinus albus HOM05D001046 ORTHO05D005883 0.0e+00 1258.4 913 69.9
ATR0691G253 Amborella trichopoda HOM05D001046 ORTHO05D005883 0.0e+00 1246.5 910 68.7
Phvul.003G034100 Phaseolus vulgaris HOM05D001046 ORTHO05D005883 0.0e+00 1243.4 913 68.8
Glyma.02G128900 Glycine max HOM05D001046 ORTHO05D005883 0.0e+00 1240.3 913 69.3
CsaV3_5G033760 Cucumis sativus L. HOM05D001046 ORTHO05D005883 0.0e+00 1238.8 913 69.2
EL10Ac6g14562 Beta vulgaris HOM05D001046 ORTHO05D005883 0.0e+00 1233.4 883 70.0
Ah.03g138130 Amaranthus hybridus HOM05D001046 ORTHO05D005883 0.0e+00 1230.3 948 67.0
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 0.0e+00 1225.7 916 69.1
DCAR_023709 Daucus carota HOM05D001046 ORTHO05D005883 0.0e+00 1223.8 898 70.4
MELO3C012192.2 Cucumis melo HOM05D001046 ORTHO05D005883 0.0e+00 1219.9 941 67.3
PGR102G1932 Punica granatum HOM05D001046 ORTHO05D005883 0.0e+00 1195.3 913 67.7
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 0.0e+00 1185.2 921 65.8
Sed0023728 Sechium edule HOM05D001046 ORTHO05D005883 0.0e+00 1182.9 910 66.5
ClCG05G023270 Citrullus lanatus HOM05D001046 ORTHO05D005883 0.0e+00 1154.0 913 65.9
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 0.0e+00 1130.9 948 62.6
HPP92_018028 Vanilla planifolia HOM05D001046 ORTHO05D005883 0.0e+00 1118.2 912 61.4
VMungo1215G2127 Vigna mungo HOM05D001046 ORTHO05D005883 0.0e+00 1100.9 784 70.0
MBI15_g18373_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 2.1e-302 1042.3 794 68.3
unitig_699.g19897 Utricularia gibba HOM05D001046 ORTHO05D005883 8.7e-288 993.8 914 57.5
QL03p044469 Quercus lobata HOM05D001046 ORTHO05D005883 2.6e-276 955.7 777 66.3
Pp3c3_32130 Physcomitrium patens HOM05D001046 ORTHO05D005883 4.6e-257 891.7 934 50.3
CDE04G1715 Ceratophyllum demersum HOM05D001046 ORTHO05D005883 4.3e-255 885.2 894 53.2
arahy.Tifrunner.gnm1.ann1.X1G7WL Arachis hypogaea HOM05D001046 ORTHO05D005883 6.7e-240 834.7 639 67.0
arahy.Tifrunner.gnm1.ann1.L5PVB5 Arachis hypogaea HOM05D001046 ORTHO05D005883 2.4e-237 826.2 636 66.7
Zm00001eb380420 Zea mays HOM05D001046 ORTHO05D005883 8.0e-209 731.5 600 62.5
Psat0s251g0080 Pisum sativum HOM05D001046 ORTHO05D005883 1.5e-207 727.2 502 72.5
CBR_g22326 Chara braunii HOM05D001046 ORTHO05D005883 2.9e-206 723.0 924 41.1
CBR_g23906 Chara braunii HOM05D001046 ORTHO05D005883 1.4e-205 720.7 918 41.2
Mapoly0176s0015 Marchantia polymorpha HOM05D001046 ORTHO05D005883 3.2e-173 613.2 554 54.0
Psat0s251g0040 Pisum sativum HOM05D001046 ORTHO05D005883 2.1e-169 600.5 414 74.2
Haze_11811 Corylus avellana HOM05D001046 ORTHO05D005883 1.1e-149 535.0 371 74.9
SMO144G0070 Selaginella moellendorffii HOM05D001046 ORTHO05D005883 9.3e-149 531.9 911 36.0
SGA_v2.0_scaffold21G09423 Striga asiatica HOM05D001046 ORTHO05D005883 9.3e-149 531.9 467 61.0
SGA_v2.0_scaffold32G13147 Striga asiatica HOM05D001046 ORTHO05D005883 1.1e-144 518.5 467 58.9
SEGI_15773 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 1.8e-136 491.1 417 61.2
SGA_v2.0_scaffold32G13175 Striga asiatica HOM05D001046 ORTHO05D005883 6.1e-132 476.1 413 64.4
MCO16G117 Micromonas commoda HOM05D001046 ORTHO05D005883 7.0e-120 436.0 884 32.2
arahy.Tifrunner.gnm1.ann1.4S8EHX Arachis hypogaea HOM05D001046 ORTHO05D005883 1.1e-117 428.7 283 70.7
Ca_30097_v3 Cicer arietinum L. HOM05D001046 ORTHO05D005883 1.1e-117 428.7 448 54.2
arahy.Tifrunner.gnm1.ann1.A78PMJ Arachis hypogaea HOM05D001046 ORTHO05D005883 4.2e-117 426.8 283 70.3
SEGI_02691 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 1.0e-102 379.0 275 65.1
Hma1.2p1_0189F.1_g082730 Hydrangea macrophylla HOM05D001046 ORTHO05D005883 6.1e-92 343.2 212 79.7
Cre08.g377450 Chlamydomonas reinhardtii HOM05D001046 ORTHO05D005883 5.8e-82 310.1 958 26.5
QL03p044493 Quercus lobata HOM05D001046 ORTHO05D005883 2.4e-67 261.5 192 70.3
MBI15_g45230_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 1.3e-62 245.7 182 64.8
MBI15_g34975_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 2.2e-57 228.4 173 64.7
PRCOL_00002313 Prasinoderma coloniale HOM05D001046 ORTHO05D005883 6.0e-55 220.3 846 25.3
SGA_v2.0_scaffold32G13185 Striga asiatica HOM05D001046 ORTHO05D005883 3.9e-54 217.6 326 45.7
Psat1g160480 Pisum sativum HOM05D001046 ORTHO05D005883 5.1e-54 217.2 137 75.2
SEGI_13623 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 3.4e-50 204.5 187 55.1
Psat0s439g0040 Pisum sativum HOM05D001046 ORTHO05D005883 2.2e-49 201.8 134 73.1
SGA_v2.0_scaffold32G13101 Striga asiatica HOM05D001046 ORTHO05D005883 1.5e-45 189.1 228 49.6
Psat6g019360 Pisum sativum HOM05D001046 ORTHO05D005883 2.5e-45 188.3 124 79.0
Lju470A13T26 Lonicera japonica HOM05D001046 ORTHO05D005883 1.9e-32 145.6 119 61.3
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 2.5e-32 145.2 132 60.6
VMungo1215G0456 Vigna mungo HOM05D001046 ORTHO05D005883 2.1e-31 142.1 129 58.9
MBI15_g18372_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 3.3e-21 108.2 72 68.1
Sabra10G0102000 Salix brachista HOM05D001046 ORTHO05D005883 7.4e-21 107.1 73 76.7
Psat5g215000 Pisum sativum HOM05D001046 ORTHO05D015028 2.8e-20 105.1 68 67.6
RcHm_v2.0_Chr1g0334921 Rosa chinensis HOM05D001046 ORTHO05D005883 2.0e-18 99.0 68 75.0
TPR.G36091 Trifolium pratense HOM05D001046 ORTHO05D005883 2.0e-18 99.0 137 46.0
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 2.9e-17 95.1 73 58.9
Psat0s3411g0120 Pisum sativum HOM05D001046 ORTHO05D015028 2.5e-16 92.0 77 55.8
Os06g0274100 Oryza sativa ssp. japonica HOM05D001046 ORTHO05D005883 5.5e-16 90.9 77 62.3
Psat1g050560 Pisum sativum HOM05D001046 ORTHO05D050390 1.1e-13 83.2 55 76.4
MELO3C034612.2 Cucumis melo HOM05D001046 ORTHO05D005883 4.8e-12 77.8 144 34.0
Lju470A14T37 Lonicera japonica HOM05D001046 ORTHO05D005883 4.8e-12 77.8 77 51.9
Lju470A13T24 Lonicera japonica HOM05D001046 ORTHO05D005883 4.1e-11 74.7 138 37.7
Pp3c9_22260 Physcomitrium patens HOM05D002786 ORTHO05D003493 5.9e-10 70.9 967 22.0
QL03p044436 Quercus lobata HOM05D001046 ORTHO05D000006 1.3e-09 69.7 34 88.2
C07p18980 Brassica napus HOM05D001046 ORTHO05D042866 5.0e-09 67.8 45 71.1
BolC7t42408H Brassica oleracea HOM05D001046 ORTHO05D042866 5.0e-09 67.8 45 71.1
Gohir.A13G103301 Gossypium hirsutum HOM05D001046 ORTHO05D005883 1.1e-08 66.6 35 82.9
Gohir.A06G118000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 7.2e-08 63.9 34 79.4
CsaV3_3G044730 Cucumis sativus L. HOM05D001046 ORTHO05D005883 1.6e-07 62.8 40 72.5
Solyc09g098240.4 Solanum lycopersicum HOM05D002786 ORTHO05D003493 1.6e-07 62.8 733 20.9
Cpa.g.sc1.256 Carica papaya HOM05D001046 ORTHO05D005883 2.1e-07 62.4 34 76.5
Sopen09g036180 Solanum pennellii HOM05D002786 ORTHO05D003493 2.1e-07 62.4 733 20.9
Gohir.A01G165300 Gossypium hirsutum HOM05D001046 ORTHO05D005883 2.7e-07 62.0 69 49.3
Lj2g0010388 Lotus japonicus HOM05D001046 ORTHO05D005883 4.7e-07 61.2 54 59.3
Peaxi162Scf00286g00442 Petunia axillaris HOM05D002786 ORTHO05D003493 2.3e-06 58.9 486 23.7
TPR.G14991 Trifolium pratense HOM05D001046 ORTHO05D005883 2.3e-06 58.9 121 36.4
Lj5g0008258 Lotus japonicus HOM05D001046 ORTHO05D005883 3.0e-06 58.5 67 53.7
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 6.7e-06 57.4 33 75.8


User provided reference genes

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