Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 4.9e-143 511.1 265 100.0
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 5.2e-68 261.9 167 81.4
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 7.5e-67 258.1 167 78.4
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 3.7e-66 255.8 207 66.7
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 5.6e-62 241.9 167 73.1
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 2.1e-61 240.0 167 73.7
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 3.1e-60 236.1 169 73.4
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 5.2e-60 235.3 167 71.3
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 8.9e-60 234.6 167 71.9
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 1.2e-59 234.2 168 75.6
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 4.4e-59 232.3 170 70.0
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 4.4e-59 232.3 166 67.5
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 9.9e-59 231.1 165 70.9
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 1.3e-58 230.7 166 68.7
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.3e-58 230.7 167 71.3
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 1.3e-58 230.7 169 69.8
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 2.9e-58 229.6 170 65.9
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 4.9e-58 228.8 167 72.5
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.9e-57 226.9 167 70.1
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 1.9e-57 226.9 166 66.3
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 4.2e-57 225.7 169 71.0
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 5.4e-57 225.3 167 70.7
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 5.4e-57 225.3 167 70.7
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 7.1e-57 224.9 168 72.0
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 9.2e-57 224.6 167 68.9
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.7e-56 223.0 170 70.0
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.7e-56 223.0 170 70.0
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 3.5e-56 222.6 172 68.0
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 4.6e-56 222.2 170 70.0
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 4.6e-56 222.2 167 67.1
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 6.0e-56 221.9 169 66.3
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 7.8e-56 221.5 167 69.5
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 7.8e-56 221.5 170 69.4
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 1.0e-55 221.1 166 68.7
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 6.6e-55 218.4 168 67.3
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 8.7e-55 218.0 174 64.9
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 2.5e-54 216.5 165 69.7
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 2.5e-54 216.5 163 71.8
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 4.3e-54 215.7 167 64.7
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 7.3e-54 214.9 173 63.0
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 1.3e-53 214.2 167 65.9
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 1.6e-53 213.8 173 62.4
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 6.2e-53 211.8 168 65.5
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 8.1e-53 211.5 167 64.7
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 1.1e-52 211.1 225 54.2
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 1.1e-52 211.1 170 62.9
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 1.1e-52 211.1 170 64.7
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 1.8e-52 210.3 170 68.2
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.1e-52 209.5 144 74.3
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 6.9e-52 208.4 165 63.0
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 6.9e-52 208.4 165 63.0
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 9.0e-52 208.0 167 65.3
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 9.0e-52 208.0 172 64.5
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 2.0e-51 206.8 167 63.5
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 2.6e-51 206.5 170 61.2
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 3.4e-51 206.1 167 65.9
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 1.3e-50 204.1 192 56.8
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 1.7e-50 203.8 208 54.8
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.7e-50 203.8 165 63.6
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.9e-49 200.3 217 54.8
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 2.4e-49 199.9 170 60.0
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 9.3e-49 198.0 124 80.6
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 3.5e-48 196.1 161 64.6
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 4.6e-48 195.7 172 61.0
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 7.8e-48 194.9 172 62.2
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 2.3e-47 193.4 172 61.0
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 3.0e-47 193.0 167 59.3
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 3.9e-47 192.6 167 61.1
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 1.9e-46 190.3 144 68.8
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 5.6e-46 188.7 170 55.3
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 5.6e-46 188.7 167 59.9
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 7.3e-46 188.3 167 55.7
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 1.6e-45 187.2 165 61.2
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.1e-44 184.5 166 56.6
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 9.0e-44 181.4 169 52.7
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 1.2e-43 181.0 149 60.4
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 2.6e-43 179.9 165 55.2
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 3.4e-43 179.5 165 54.5
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 4.5e-43 179.1 167 54.5
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 4.5e-43 179.1 167 53.9
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 9.9e-43 177.9 169 53.8
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 1.7e-42 177.2 169 52.1
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 2.9e-42 176.4 169 56.8
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 6.4e-42 175.3 169 53.8
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 8.4e-42 174.9 167 52.7
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 1.1e-41 174.5 162 59.3
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 1.4e-41 174.1 167 56.3
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 6.0e-40 168.7 156 55.1
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 7.9e-40 168.3 169 50.9
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 1.0e-39 167.9 169 49.7
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.3e-37 161.0 151 58.9
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 1.3e-37 161.0 144 54.2
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 1.3e-37 161.0 175 49.7
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 2.1e-37 160.2 145 60.0
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 1.4e-36 157.5 153 52.3
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 6.9e-36 155.2 155 53.5
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 9.0e-36 154.8 149 57.0
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 4.5e-35 152.5 169 53.3
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 6.5e-34 148.7 141 51.1
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 3.2e-33 146.4 156 47.4
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 9.3e-33 144.8 128 57.8
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 2.7e-32 143.3 114 64.9
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 2.5e-30 136.7 84 82.1
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 5.7e-30 135.6 110 60.9
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 1.4e-28 131.0 156 43.6
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 1.8e-28 130.6 156 46.8
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 9.0e-28 128.3 105 64.8
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 5.1e-23 112.5 156 37.8
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 6.7e-23 112.1 120 51.7
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 5.7e-22 109.0 83 66.3
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 6.3e-21 105.5 91 62.6
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 6.3e-21 105.5 80 63.8
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.4e-20 104.4 83 67.5
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 6.9e-20 102.1 84 63.1
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.5e-19 100.9 70 71.4
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 2.9e-18 96.7 104 52.9
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 2.1e-16 90.5 61 72.1
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 7.9e-16 88.6 114 42.1
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 3.4e-11 73.2 50 68.0
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 2.1e-08 63.9 75 49.3
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 2.7e-08 63.5 43 69.8
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 6.1e-08 62.4 82 45.1
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 7.9e-08 62.0 45 62.2
Dinv21934 Davidia involucrata HOM05D001981 ORTHO05D000470 1.5e-06 57.8 39 74.4


User provided reference genes

Program Settings