Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 1.6e-73 279.3 136 100.0
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 5.8e-71 270.8 136 95.6
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 9.9e-71 270.0 136 94.9
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 9.9e-71 270.0 136 94.9
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 2.2e-70 268.9 136 94.1
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 2.9e-70 268.5 136 93.4
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 4.9e-70 267.7 136 93.4
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 1.9e-69 265.8 136 92.6
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 1.9e-69 265.8 136 91.9
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 2.4e-69 265.4 136 92.6
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 3.2e-69 265.0 136 91.9
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 3.2e-69 265.0 136 91.9
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 3.2e-69 265.0 136 91.2
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 7.1e-69 263.8 136 91.2
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 7.1e-69 263.8 136 91.2
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 7.1e-69 263.8 136 91.2
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.2e-68 263.1 136 91.2
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.2e-68 263.1 136 91.2
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 1.2e-68 263.1 136 91.2
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 1.2e-68 263.1 136 91.2
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 2.1e-68 262.3 136 91.2
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 2.1e-68 262.3 136 91.9
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.7e-68 261.9 136 90.4
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 3.5e-68 261.5 136 91.9
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 3.5e-68 261.5 135 91.9
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 6.0e-68 260.8 136 89.0
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 6.0e-68 260.8 136 89.0
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 7.8e-68 260.4 136 89.7
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 7.8e-68 260.4 136 90.4
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.0e-67 260.0 136 89.0
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 1.3e-67 259.6 136 89.7
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 1.7e-67 259.2 136 90.4
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 2.3e-67 258.8 136 90.4
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 3.0e-67 258.5 136 89.7
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 3.0e-67 258.5 133 91.7
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 3.0e-67 258.5 135 88.9
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 3.9e-67 258.1 135 89.6
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 1.1e-66 256.5 136 90.4
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 1.5e-66 256.1 135 87.4
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 1.9e-66 255.8 135 86.7
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 1.9e-66 255.8 136 89.0
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.9e-66 255.8 136 89.0
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.9e-66 255.8 136 89.0
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.9e-66 255.8 136 89.0
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 1.9e-66 255.8 136 87.5
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 1.9e-66 255.8 136 87.5
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 2.5e-66 255.4 136 88.2
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 2.5e-66 255.4 136 88.2
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 3.3e-66 255.0 136 86.8
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 3.3e-66 255.0 136 86.8
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 4.3e-66 254.6 135 89.6
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 4.3e-66 254.6 135 86.7
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 5.6e-66 254.2 136 89.0
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 7.3e-66 253.8 136 86.0
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 7.3e-66 253.8 136 86.0
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 7.3e-66 253.8 136 86.0
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 7.3e-66 253.8 136 86.0
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 9.5e-66 253.4 135 85.9
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 1.2e-65 253.1 136 88.2
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 1.2e-65 253.1 136 85.3
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 1.2e-65 253.1 136 88.2
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 1.2e-65 253.1 136 87.5
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 86.0
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 2.1e-65 252.3 136 85.3
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 3.6e-65 251.5 132 91.7
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 6.2e-65 250.8 136 86.8
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 8.1e-65 250.4 136 85.3
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 8.1e-65 250.4 136 83.8
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 3.1e-64 248.4 134 86.6
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 2.0e-63 245.7 136 83.8
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 2.0e-63 245.7 135 85.9
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 2.0e-63 245.7 138 83.3
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 4.4e-63 244.6 136 84.6
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 4.4e-63 244.6 136 85.3
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 5.8e-63 244.2 136 83.8
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 5.8e-63 244.2 136 84.6
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 9.9e-63 243.4 136 83.8
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 9.9e-63 243.4 136 83.8
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 9.9e-63 243.4 136 83.8
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 1.7e-62 242.7 136 83.1
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 2.2e-62 242.3 136 83.1
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 3.8e-62 241.5 136 83.1
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 4.9e-62 241.1 136 82.4
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 8.4e-62 240.4 136 81.6
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 1.9e-61 239.2 136 83.8
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 3.2e-61 238.4 136 80.9
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 3.2e-61 238.4 136 80.9
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 4.1e-61 238.0 124 89.5
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 2.7e-60 235.3 124 87.9
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 1.0e-59 233.4 124 87.9
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 2.3e-59 232.3 124 87.9
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 2.3e-59 232.3 124 89.5
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 6.6e-59 230.7 129 82.9
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 8.7e-59 230.3 131 82.4
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 8.7e-59 230.3 130 84.6
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 1.6e-57 226.1 124 89.5
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 2.8e-57 225.3 133 81.2
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.6e-57 224.9 124 86.3
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 6.2e-57 224.2 119 87.4
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 5.2e-56 221.1 138 76.8
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 2.0e-55 219.2 133 76.7
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 3.4e-55 218.4 138 74.6
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 3.4e-55 218.4 137 72.3
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 5.8e-55 217.6 133 75.9
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 1.1e-53 213.4 133 73.7
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 2.7e-52 208.8 206 54.4
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 1.0e-51 206.8 136 73.5
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 2.3e-51 205.7 120 80.8
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 6.6e-51 204.1 135 69.6
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 9.6e-50 200.3 132 71.2
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 3.6e-49 198.4 121 80.2
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 5.3e-48 194.5 136 66.2
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 9.9e-47 190.3 134 64.9
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 4.2e-45 184.9 153 61.4
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 9.6e-42 173.7 125 72.8
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 1.6e-41 172.9 128 62.5
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 2.8e-41 172.2 92 88.0
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 1.2e-36 156.8 76 93.4
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 7.9e-36 154.1 92 76.1
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 2.3e-35 152.5 91 81.3
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 3.9e-35 151.8 74 91.9
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 6.7e-35 151.0 74 91.9
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 6.7e-35 151.0 74 91.9
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 6.7e-35 151.0 75 89.3
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 7.4e-34 147.5 75 86.7
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 1.1e-32 143.7 74 83.8
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 1.1e-32 143.7 74 83.8
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 1.7e-30 136.3 73 83.6
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 3.5e-28 128.6 76 78.9
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 3.7e-25 118.6 140 50.0
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 1.8e-24 116.3 131 42.7
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 1.5e-23 113.2 72 76.4
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 3.3e-18 95.5 117 47.0
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 5.7e-18 94.7 50 94.0
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 2.2e-17 92.8 47 87.2
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 2.8e-17 92.4 165 43.0
Cre03.g159300 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 1.5e-15 86.7 126 40.5
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 2.6e-10 69.3 40 82.5
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 5.7e-10 68.2 35 82.9
Os08g0469200 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 1.4e-08 63.5 67 50.7
PRCOL_00003098 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 9.1e-08 60.8 141 32.6


User provided reference genes

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