Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 6.6e-217 757.3 423 100.0
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 1.4e-126 457.2 449 63.5
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 2.3e-121 439.9 450 62.9
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 6.6e-116 421.8 450 61.1
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 2.5e-107 393.3 451 58.3
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 6.0e-101 372.1 451 56.5
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 1.0e-100 371.3 473 55.0
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.3e-100 370.9 449 55.9
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 2.3e-100 370.2 445 53.9
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 6.6e-100 368.6 472 53.8
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 1.4e-94 350.9 427 54.8
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 1.4e-94 350.9 473 51.8
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 9.2e-94 348.2 450 54.4
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 3.5e-93 346.3 430 54.0
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 6.0e-93 345.5 429 53.8
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 1.7e-92 344.0 449 53.5
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 5.1e-92 342.4 450 53.8
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 3.3e-91 339.7 449 52.3
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 4.3e-91 339.3 437 54.2
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 2.1e-90 337.0 431 54.5
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 2.1e-90 337.0 418 54.5
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 5.2e-89 332.4 466 50.4
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.0e-88 330.5 441 51.9
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 4.4e-88 329.3 446 51.3
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 9.9e-88 328.2 453 53.2
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 9.9e-88 328.2 424 54.0
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 1.1e-86 324.7 430 51.4
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.1e-86 324.7 448 51.1
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 9.3e-86 321.6 430 52.3
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 1.2e-85 321.2 471 48.8
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 6.0e-85 318.9 412 52.9
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 3.0e-84 316.6 458 48.9
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 3.3e-83 313.2 536 44.2
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 7.3e-83 312.0 414 51.9
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 1.3e-82 311.2 391 54.7
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 3.1e-81 306.6 442 49.1
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 6.9e-81 305.4 370 55.9
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 1.2e-80 304.7 434 49.5
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 2.6e-80 303.5 461 49.2
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 9.9e-80 301.6 412 51.9
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 1.3e-79 301.2 443 47.2
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 6.4e-79 298.9 445 49.0
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 5.4e-78 295.8 440 46.8
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 9.3e-78 295.0 522 44.8
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 9.3e-78 295.0 557 42.5
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 5.1e-76 289.3 431 51.3
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 1.5e-75 287.7 350 55.4
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 1.5e-75 287.7 419 48.9
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 1.9e-75 287.3 389 53.0
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 4.3e-75 286.2 430 47.0
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 1.3e-74 284.6 434 47.2
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 2.8e-74 283.5 430 48.4
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 4.8e-74 282.7 429 47.3
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.1e-73 281.6 442 46.2
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.8e-73 280.8 466 46.6
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 4.9e-71 272.7 445 44.9
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.1e-70 271.6 449 47.0
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 1.1e-70 271.6 433 46.4
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 3.2e-70 270.0 425 46.6
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.2e-70 270.0 455 46.8
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 5.4e-70 269.2 389 46.0
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 7.1e-70 268.9 453 45.7
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 9.3e-70 268.5 431 47.1
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 1.2e-69 268.1 450 46.2
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 7.9e-69 265.4 451 46.1
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 1.8e-68 264.2 422 45.0
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 1.1e-67 261.5 443 45.1
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 7.4e-67 258.8 421 46.1
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 1.3e-66 258.1 444 43.7
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 2.1e-66 257.3 434 44.5
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 4.8e-66 256.1 260 63.1
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 4.0e-65 253.1 415 44.6
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 5.3e-65 252.7 434 43.8
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 5.8e-64 249.2 316 51.6
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 5.8e-64 249.2 428 44.6
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 1.9e-62 244.2 419 44.6
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 5.1e-60 236.1 370 47.8
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 8.7e-60 235.3 466 40.8
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.5e-59 234.6 406 45.3
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 4.3e-59 233.0 441 44.2
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 4.3e-59 233.0 429 42.7
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.3e-58 231.5 443 42.0
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 3.7e-58 229.9 390 43.6
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 2.4e-57 227.3 430 42.3
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 9.0e-57 225.3 443 41.3
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 2.6e-56 223.8 428 40.4
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 3.8e-55 219.9 441 41.3
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 3.8e-55 219.9 437 41.9
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 7.2e-54 215.7 444 41.7
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 9.3e-54 215.3 417 41.7
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.2e-53 214.9 445 40.4
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 4.6e-53 213.0 424 40.1
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 1.8e-52 211.1 386 41.2
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 6.7e-52 209.1 431 39.4
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 7.4e-51 205.7 420 40.2
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 9.7e-51 205.3 423 39.5
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 3.7e-50 203.4 441 40.6
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 4.8e-50 203.0 434 38.7
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 1.8e-49 201.1 425 39.3
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 6.9e-49 199.1 321 48.6
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 7.7e-48 195.7 463 37.8
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 2.2e-47 194.1 410 40.5
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 1.0e-44 185.3 416 40.6
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 2.3e-44 184.1 413 40.0
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 5.1e-44 183.0 413 40.0
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 1.1e-43 181.8 429 38.9
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 2.8e-42 177.2 407 40.3
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 3.7e-42 176.8 419 37.2
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 6.9e-41 172.6 419 39.1
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.5e-38 164.1 435 36.8
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 2.2e-34 151.0 358 35.8
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 1.8e-33 147.9 168 54.2
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 5.9e-32 142.9 316 40.5
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.6e-27 127.5 279 39.8
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 4.8e-26 123.2 268 38.8
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.4e-25 120.9 132 58.3
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 1.2e-24 118.6 458 28.8
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 1.7e-23 114.8 179 45.3
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 1.2e-21 108.6 435 29.4
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 1.4e-20 105.1 257 38.5
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.3e-18 98.6 77 71.4
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 7.0e-17 92.8 429 28.7
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 2.9e-15 87.4 143 44.1
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 2.9e-15 87.4 454 26.7
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 6.1e-13 79.7 91 49.5
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 1.0e-12 79.0 132 45.5
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 6.8e-12 76.3 102 47.1
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 3.4e-11 73.9 429 26.1
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 6.3e-10 69.7 78 55.1
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 1.8e-09 68.2 280 30.0
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 1.2e-08 65.5 61 60.7
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 2.0e-08 64.7 319 28.5
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 3.8e-07 60.5 65 52.3
SGA_v2.0_scaffold340G49301 Striga asiatica HOM05D005355 ORTHO05D006591 3.3e-06 57.4 63 52.4
arahy.Tifrunner.gnm1.ann1.F65TCR Arachis hypogaea HOM05D005355 ORTHO05D006591 9.5e-06 55.8 43 58.1
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 9.5e-06 55.8 66 48.5


User provided reference genes

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