Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27328 Davidia involucrata HOM05D004967 ORTHO05D006146 2.8e-118 428.7 233 100.0
Dinv40417 Davidia involucrata HOM05D004967 ORTHO05D006146 2.7e-76 289.3 208 73.1
Dinv07242 Davidia involucrata HOM05D004967 ORTHO05D006146 1.9e-74 283.1 208 72.6
CSS0022408 Camellia sinensis var. sinensis HOM05D004967 ORTHO05D006146 8.1e-73 277.7 206 71.4
Actinidia23071 Actinidia chinensis HOM05D004967 ORTHO05D006146 6.9e-72 274.6 211 78.2
Ciclev10002109m.g Citrus clementina HOM05D004967 ORTHO05D006146 1.3e-70 270.4 217 62.2
CSS0015935 Camellia sinensis var. sinensis HOM05D004967 ORTHO05D006146 8.4e-70 267.7 206 69.9
Haze_00459 Corylus avellana HOM05D004967 ORTHO05D006146 2.4e-69 266.2 209 66.5
Cfa016003 Carpinus fangiana HOM05D004967 ORTHO05D006146 5.4e-69 265.0 209 67.0
Rhsim06G0104700 Rhododendron simsii HOM05D004967 ORTHO05D006146 3.3e-66 255.8 200 66.0
QL09p035340 Quercus lobata HOM05D004967 ORTHO05D006146 1.3e-65 253.8 207 63.8
Atru.chr13.1436 Acer truncatum HOM05D004967 ORTHO05D006146 1.4e-64 250.4 210 61.9
CSS0002296 Camellia sinensis var. sinensis HOM05D004967 ORTHO05D006146 1.8e-64 250.0 206 65.0
Lj7C339G8 Lonicera japonica HOM05D004967 ORTHO05D006146 3.1e-64 249.2 206 63.1
CSS0011461 Camellia sinensis var. sinensis HOM05D004967 ORTHO05D006146 4.0e-64 248.8 206 64.6
TWI12G0727 Tripterygium wilfordii HOM05D004967 ORTHO05D006146 4.0e-64 248.8 208 60.6
MELO3C008775.2 Cucumis melo HOM05D004967 ORTHO05D006146 6.9e-64 248.1 204 59.3
Thecc.08G123500 Theobroma cacao HOM05D004967 ORTHO05D006146 6.9e-64 248.1 209 61.7
Duzib116G0335 Durio zibethinus HOM05D004967 ORTHO05D006146 1.5e-63 246.9 210 62.9
CANSAT54G0493 Cannabis sativa HOM05D004967 ORTHO05D006146 3.4e-63 245.7 207 60.4
COL.COLO4_35945 Corchorus olitorius HOM05D004967 ORTHO05D006146 4.5e-63 245.4 209 59.8
Gohir.D01G181000 Gossypium hirsutum HOM05D004967 ORTHO05D006146 7.6e-63 244.6 206 64.1
Gorai.002G221500 Gossypium raimondii HOM05D004967 ORTHO05D006146 7.6e-63 244.6 206 64.1
ClCG08G005580 Citrullus lanatus HOM05D004967 ORTHO05D006146 9.9e-63 244.2 202 58.9
Nitab4.5_0005272g0050 Nicotiana tabacum HOM05D004967 ORTHO05D006146 9.9e-63 244.2 206 66.0
Potri.005G176500 Populus trichocarpa HOM05D004967 ORTHO05D006146 9.9e-63 244.2 210 61.4
GSVIVG01008885001 Vitis vinifera HOM05D004967 ORTHO05D006146 1.3e-62 243.8 211 62.1
TAR376G0668 Trochodendron aralioides HOM05D004967 ORTHO05D006146 1.7e-62 243.4 203 68.5
Gohir.D05G236800 Gossypium hirsutum HOM05D004967 ORTHO05D006146 2.2e-62 243.0 210 60.0
CANSAT54G1838 Cannabis sativa HOM05D004967 ORTHO05D006146 4.9e-62 241.9 207 59.9
CiPaw.06G029300 Carya illinoinensis HOM05D004967 ORTHO05D006146 1.1e-61 240.7 209 62.2
CsaV3_2G009340 Cucumis sativus L. HOM05D004967 ORTHO05D006146 1.4e-61 240.4 205 57.1
Duzib093G0019 Durio zibethinus HOM05D004967 ORTHO05D006146 2.4e-61 239.6 210 60.5
Sed0005970 Sechium edule HOM05D004967 ORTHO05D006146 3.2e-61 239.2 204 56.9
Eucgr.F03780 Eucalyptus grandis HOM05D004967 ORTHO05D006146 4.2e-61 238.8 208 60.1
MD15G1351500 Malus domestica HOM05D004967 ORTHO05D006146 5.4e-61 238.4 208 61.1
vmacro12539 Vaccinium macrocarpon HOM05D004967 ORTHO05D006146 5.4e-61 238.4 273 56.4
Gohir.A05G234500 Gossypium hirsutum HOM05D004967 ORTHO05D006146 9.3e-61 237.7 210 58.6
Gohir.A01G188500 Gossypium hirsutum HOM05D004967 ORTHO05D006146 1.6e-60 236.9 207 63.8
CAN.G792.65 Capsicum annuum HOM05D004967 ORTHO05D006146 2.1e-60 236.5 208 57.7
Eucgr.L02366 Eucalyptus grandis HOM05D004967 ORTHO05D006146 2.1e-60 236.5 214 58.4
RcHm_v2.0_Chr6g0295611 Rosa chinensis HOM05D004967 ORTHO05D006146 2.7e-60 236.1 209 59.3
Gorai.009G245200 Gossypium raimondii HOM05D004967 ORTHO05D006146 4.6e-60 235.3 210 59.0
MD08G1165700 Malus domestica HOM05D004967 ORTHO05D006146 4.6e-60 235.3 205 59.5
PGSC0003DMG400022093 Solanum tuberosum HOM05D004967 ORTHO05D006146 7.9e-60 234.6 208 64.9
Sabra05G0133100 Salix brachista HOM05D004967 ORTHO05D006146 1.3e-59 233.8 211 59.7
Manes.02G162100 Manihot esculenta HOM05D004967 ORTHO05D006146 2.3e-59 233.0 207 58.9
PGR042G3942 Punica granatum HOM05D004967 ORTHO05D006146 5.1e-59 231.9 210 57.1
Solyc11g030380.2 Solanum lycopersicum HOM05D004967 ORTHO05D006146 2.5e-58 229.6 208 55.8
Solyc11g030390.2 Solanum lycopersicum HOM05D004967 ORTHO05D006146 2.5e-58 229.6 208 56.2
Sabra02G0066300 Salix brachista HOM05D004967 ORTHO05D006146 3.3e-58 229.2 210 57.1
Potri.002G084900 Populus trichocarpa HOM05D004967 ORTHO05D006146 1.6e-57 226.9 210 57.1
Peaxi162Scf00688g00357 Petunia axillaris HOM05D004967 ORTHO05D006146 1.1e-56 224.2 205 56.6
Sopen11g013380 Solanum pennellii HOM05D004967 ORTHO05D006146 1.4e-56 223.8 210 55.2
Nitab4.5_0007033g0030 Nicotiana tabacum HOM05D004967 ORTHO05D006146 1.8e-56 223.4 206 62.6
Sopen11g013330 Solanum pennellii HOM05D004967 ORTHO05D006146 1.8e-56 223.4 210 55.2
Psat6g042000 Pisum sativum HOM05D004967 ORTHO05D006146 2.0e-55 219.9 206 56.8
TAR625G0546 Trochodendron aralioides HOM05D004967 ORTHO05D006146 4.5e-55 218.8 201 56.2
FAN24G1575 Fragaria x ananassa HOM05D004967 ORTHO05D006146 5.8e-55 218.4 210 55.2
Lj1g0018094 Lotus japonicus HOM05D004967 ORTHO05D006146 5.8e-55 218.4 206 54.4
FvH4_2g26730 Fragaria vesca HOM05D004967 ORTHO05D006146 7.6e-55 218.0 210 55.2
FAN15G1580 Fragaria x ananassa HOM05D004967 ORTHO05D006146 7.6e-55 218.0 212 56.1
Sc23g0000730 Simmondsia chinensis HOM05D004967 ORTHO05D006146 1.3e-54 217.2 194 57.2
Lalb_Chr04g0253391 Lupinus albus HOM05D004967 ORTHO05D006146 1.7e-54 216.9 203 56.7
DCAR_017414 Daucus carota HOM05D004967 ORTHO05D006146 3.8e-54 215.7 203 57.1
Glyma.13G080800 Glycine max HOM05D004967 ORTHO05D006146 3.8e-54 215.7 204 55.4
EL10Ac1g01046 Beta vulgaris HOM05D004967 ORTHO05D006146 4.9e-54 215.3 203 53.7
SalBow6G6278 Salvia bowleyana HOM05D004967 ORTHO05D006146 4.9e-54 215.3 204 54.9
AUR62027891 Chenopodium quinoa HOM05D004967 ORTHO05D006146 1.1e-53 214.2 203 54.2
Cc00_g04290 Coffea canephora HOM05D004967 ORTHO05D006146 1.4e-53 213.8 216 59.7
Hund16853 Selenicereus undatus HOM05D004967 ORTHO05D006146 1.4e-53 213.8 220 51.8
Lsat_1_v5_gn_2_72221 Lactuca sativa HOM05D004967 ORTHO05D006146 2.4e-53 213.0 214 52.8
Phvul.008G163800 Phaseolus vulgaris HOM05D004967 ORTHO05D006146 2.4e-53 213.0 204 54.4
Ah.05g170880 Amaranthus hybridus HOM05D004967 ORTHO05D006146 3.2e-53 212.6 202 52.5
MSTRG.22413 Avicennia marina HOM05D004967 ORTHO05D006146 5.5e-53 211.8 208 53.4
Ca_12612_v3 Cicer arietinum L. HOM05D004967 ORTHO05D006146 7.1e-53 211.5 204 56.9
THA.LOC104806820 Tarenaya hassleriana HOM05D004967 ORTHO05D006146 1.2e-52 210.7 223 50.7
DCAR_003730 Daucus carota HOM05D004967 ORTHO05D006146 2.7e-52 209.5 207 54.6
Lalb_Chr10g0101781 Lupinus albus HOM05D004967 ORTHO05D006146 2.7e-52 209.5 198 55.6
Nn1g08721 Nelumbo nucifera HOM05D004967 ORTHO05D006146 2.7e-52 209.5 217 62.7
Oeu017287.2 Olea europaea HOM05D004967 ORTHO05D006146 1.3e-51 207.2 204 54.9
Medtr1g030420 Medicago truncatula HOM05D004967 ORTHO05D006146 2.3e-51 206.5 211 52.1
arahy.Tifrunner.gnm1.ann1.W41MX0 Arachis hypogaea HOM05D004967 ORTHO05D006146 3.0e-51 206.1 208 53.4
Oeu050911.2 Olea europaea HOM05D004967 ORTHO05D006146 3.9e-51 205.7 200 54.5
Hund27025 Selenicereus undatus HOM05D004967 ORTHO05D006146 8.7e-51 204.5 209 51.7
arahy.Tifrunner.gnm1.ann1.T53UMC Arachis hypogaea HOM05D004967 ORTHO05D006146 2.5e-50 203.0 208 52.4
Aa31LG6G9260 Aethionema arabicum HOM05D004967 ORTHO05D006146 9.6e-50 201.1 209 50.2
CARHR036020 Cardamine hirsuta HOM05D004967 ORTHO05D006146 1.6e-49 200.3 221 50.7
Cpa.g.sc36.53 Carica papaya HOM05D004967 ORTHO05D006146 2.8e-49 199.5 205 53.2
BcaC08g42866 Brassica carinata HOM05D004967 ORTHO05D006146 3.7e-49 199.1 212 52.4
C06p00760 Brassica napus HOM05D004967 ORTHO05D006146 3.7e-49 199.1 212 52.4
BolC6t35218H Brassica oleracea HOM05D004967 ORTHO05D006146 3.7e-49 199.1 212 52.4
Thhalv10011651m.g Eutrema salsugineum HOM05D004967 ORTHO05D006146 4.8e-49 198.7 210 51.9
THA.LOC104817267 Tarenaya hassleriana HOM05D004967 ORTHO05D006146 6.2e-49 198.4 220 50.0
BraSC36t46077Z Brassica rapa HOM05D004967 ORTHO05D006146 1.8e-48 196.8 212 51.4
AUR62019051 Chenopodium quinoa HOM05D004967 ORTHO05D006146 1.8e-48 196.8 233 47.2
Glyma.14G148500 Glycine max HOM05D004967 ORTHO05D006146 1.8e-48 196.8 204 52.0
A10p07360 Brassica napus HOM05D004967 ORTHO05D006146 2.4e-48 196.4 212 51.4
Sp1g33630 Schrenkiella parvula HOM05D004967 ORTHO05D006146 2.4e-48 196.4 210 52.4
SGA_v2.0_scaffold28G12004 Striga asiatica HOM05D004967 ORTHO05D006146 3.1e-48 196.1 208 51.4
Aa31LG9G14250 Aethionema arabicum HOM05D004967 ORTHO05D006146 5.3e-48 195.3 207 48.3
AL1G52430 Arabidopsis lyrata HOM05D004967 ORTHO05D006146 9.0e-48 194.5 210 50.5
Migut.N03288 Erythranthe guttata HOM05D004967 ORTHO05D006146 2.6e-47 193.0 220 49.5
AT1G44770 Arabidopsis thaliana HOM05D004967 ORTHO05D006146 3.4e-47 192.6 210 50.0
BcaB07g33933 Brassica carinata HOM05D004967 ORTHO05D006146 3.4e-47 192.6 213 49.8
Carub.0001s3529 Capsella rubella HOM05D004967 ORTHO05D006146 4.5e-47 192.2 209 50.2
MBI06_g20715_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.0e-46 191.0 206 53.4
CDE08G1235 Ceratophyllum demersum HOM05D004967 ORTHO05D006146 1.7e-46 190.3 201 49.3
SGA_v2.0_scaffold25G11115 Striga asiatica HOM05D004967 ORTHO05D006146 6.5e-46 188.3 210 50.0
HanXRQChr14g0444041 Helianthus annuus HOM05D004967 ORTHO05D006146 1.1e-45 187.6 214 57.9
MSTRG.1454 Avicennia marina HOM05D004967 ORTHO05D006146 3.2e-45 186.0 215 49.8
Aqoxy6G00188 Aquilegia oxysepala HOM05D004967 ORTHO05D006146 9.3e-45 184.5 202 50.5
ECA238G0202 Erigeron canadensis HOM05D004967 ORTHO05D006146 1.2e-44 184.1 205 50.2
TPR.G25780 Trifolium pratense HOM05D004967 ORTHO05D006146 2.1e-44 183.3 176 52.3
TAR625G0133 Trochodendron aralioides HOM05D004967 ORTHO05D006146 2.5e-42 176.4 201 49.8
PSO782G2864 Papaver somniferum HOM05D004967 ORTHO05D006146 1.7e-38 163.7 211 46.4
Lalb_Chr00c21g0406251 Lupinus albus HOM05D004967 ORTHO05D006146 3.8e-38 162.5 123 65.9
QL09p037225 Quercus lobata HOM05D004967 ORTHO05D006146 7.2e-37 158.3 160 54.4
unitig_22.g6736 Utricularia gibba HOM05D001808 ORTHO05D001747 9.3e-37 157.9 208 44.2
PSO170G5727 Papaver somniferum HOM05D004967 ORTHO05D006146 1.3e-33 147.5 213 44.6
ATR0104G008 Amborella trichopoda HOM05D004967 ORTHO05D006146 4.8e-33 145.6 211 44.5
QL09p036488 Quercus lobata HOM05D004967 ORTHO05D006146 1.1e-32 144.4 78 84.6
HPP92_011156 Vanilla planifolia HOM05D004967 ORTHO05D006146 8.8e-27 124.8 212 37.7
SEGI_02584 Sequoiadendron giganteum HOM05D004967 ORTHO05D006146 1.5e-26 124.0 209 35.4
PSO782G2362 Papaver somniferum HOM05D004967 ORTHO05D006146 2.6e-26 123.2 198 41.9
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.3e-25 120.9 145 47.6
MBI08_g02103_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D011152 1.5e-23 114.0 75 68.0
MBI02_g43670_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 3.4e-23 112.8 69 73.9
MBI18_g45942_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 7.7e-23 111.7 71 69.0
Os03g0701600 Oryza sativa ssp. japonica HOM05D004967 ORTHO05D006146 6.5e-22 108.6 218 33.5
Zm00001eb054160 Zea mays HOM05D004967 ORTHO05D006146 7.2e-21 105.1 209 33.5
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.6e-20 104.0 100 53.0
Gohir.D06G124400 Gossypium hirsutum HOM05D004967 ORTHO05D006146 8.0e-20 101.7 136 55.1
Gorai.013G198200 Gossypium raimondii HOM05D004967 ORTHO05D006146 5.2e-19 99.0 127 44.9
MBI18_g40420_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 2.6e-18 96.7 71 66.2
FAN27G2484 Fragaria x ananassa HOM05D004967 ORTHO05D006146 9.7e-18 94.7 128 45.3
FAN20G0116 Fragaria x ananassa HOM05D004967 ORTHO05D006146 5.3e-16 89.0 53 77.4
SEGI_08861 Sequoiadendron giganteum HOM05D004967 ORTHO05D006146 1.2e-15 87.8 208 28.8
Gorai.009G323800 Gossypium raimondii HOM05D004967 ORTHO05D006146 2.6e-15 86.7 128 48.4
FAN27G1416 Fragaria x ananassa HOM05D004967 ORTHO05D006146 1.3e-14 84.3 55 74.5
Actinidia02612 Actinidia chinensis HOM05D004967 ORTHO05D004601 1.1e-13 81.3 78 57.7
Mapoly0023s0096 Marchantia polymorpha HOM05D004160 ORTHO05D004757 2.5e-13 80.1 211 30.8
Mapoly0023s0095 Marchantia polymorpha HOM05D004967 ORTHO05D004757 9.4e-13 78.2 208 29.8
MBI18_g40417_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.2e-12 77.8 50 66.0
Pp3c23_8360 Physcomitrium patens HOM05D004160 ORTHO05D004757 2.3e-11 73.6 121 30.6
MBI12_g00099_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 5.2e-11 72.4 54 63.0
arahy.Tifrunner.gnm1.ann1.UMLE7H Arachis hypogaea HOM05D004967 ORTHO05D006146 6.7e-11 72.0 127 41.7
Thhalv10011964m.g Eutrema salsugineum HOM05D004967 ORTHO05D006146 1.2e-10 71.2 58 62.1
CBR_g13070 Chara braunii HOM05D004967 ORTHO05D006146 4.4e-10 69.3 205 29.8
Pp3c8_11730 Physcomitrium patens HOM05D004160 ORTHO05D004757 2.2e-09 67.0 122 31.1
AagrBONN_evm.TU.Sc2ySwM_344.3696 Anthoceros agrestis HOM05D004160 ORTHO05D004757 9.1e-08 61.6 228 25.9
SMO235G0072 Selaginella moellendorffii HOM05D004967 ORTHO05D006146 1.6e-07 60.8 105 30.5
SGA_v2.0_scaffold106G30705 Striga asiatica HOM05D004967 ORTHO05D006146 1.0e-06 58.2 105 35.2
GSVIVG01009149001 Vitis vinifera HOM05D004160 ORTHO05D004757 2.9e-06 56.6 84 38.1
Atru.chr13.1038 Acer truncatum HOM05D004160 ORTHO05D004757 3.8e-06 56.2 83 42.2
Sc01g0001090 Simmondsia chinensis HOM05D004160 ORTHO05D004757 5.0e-06 55.8 86 41.9


User provided reference genes

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