Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 4.8e-114 414.5 200 100.0
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 4.5e-72 275.0 208 67.3
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 7.2e-70 267.7 206 68.4
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.8e-68 263.1 213 67.1
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 4.1e-65 251.9 209 65.1
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 4.1e-65 251.9 177 74.0
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 3.5e-64 248.8 199 65.3
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.0e-63 247.3 213 64.8
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 2.2e-63 246.1 208 60.1
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 3.8e-63 245.4 208 63.9
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 3.2e-62 242.3 216 60.2
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 1.2e-61 240.4 212 62.3
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 2.1e-61 239.6 216 62.5
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.7e-61 239.2 201 64.2
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.7e-61 239.2 201 64.2
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 6.1e-61 238.0 211 63.0
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 2.3e-60 236.1 206 62.1
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 3.0e-60 235.7 232 56.9
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 3.0e-60 235.7 213 61.5
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 4.0e-60 235.3 209 61.7
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.5e-59 233.4 201 62.7
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.6e-59 232.6 209 60.8
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.6e-59 232.6 209 61.2
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 4.4e-59 231.9 219 60.3
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 3.7e-58 228.8 207 61.4
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 6.3e-58 228.0 203 62.6
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 6.3e-58 228.0 203 62.1
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 6.3e-58 228.0 203 62.1
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 6.3e-58 228.0 200 57.5
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 8.2e-58 227.6 200 57.5
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.1e-57 227.3 206 58.7
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 1.8e-57 226.5 179 64.2
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 3.1e-57 225.7 220 59.5
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 3.1e-57 225.7 203 60.6
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 4.1e-57 225.3 231 54.5
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 5.3e-57 224.9 199 60.3
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 1.2e-56 223.8 153 79.1
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 2.7e-56 222.6 197 61.4
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 2.7e-56 222.6 216 56.5
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.0e-55 220.7 215 57.2
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 1.3e-55 220.3 213 57.3
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 2.9e-55 219.2 201 57.2
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 3.8e-55 218.8 224 55.4
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 8.5e-55 217.6 201 58.7
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.9e-54 216.5 214 59.8
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 4.2e-54 215.3 221 57.9
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 1.6e-53 213.4 194 58.8
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 3.6e-53 212.2 201 57.7
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 8.0e-53 211.1 228 54.8
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 1.4e-52 210.3 206 56.3
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 2.3e-52 209.5 198 55.1
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 5.2e-52 208.4 212 52.4
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.5e-51 206.8 201 56.2
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.6e-51 206.1 220 55.5
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 3.4e-51 205.7 204 54.9
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.7e-50 203.4 220 53.6
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 4.8e-50 201.8 208 57.2
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 1.4e-49 200.3 204 55.9
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 7.0e-49 198.0 185 57.8
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 9.1e-49 197.6 220 51.8
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 9.1e-49 197.6 190 55.3
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.0e-48 196.4 209 56.9
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 4.5e-48 195.3 227 50.2
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.3e-47 193.7 212 52.4
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.3e-47 193.7 208 51.9
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 2.9e-47 192.6 192 63.0
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 3.8e-47 192.2 218 55.5
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 5.0e-47 191.8 222 49.5
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 8.6e-47 191.0 186 58.1
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 8.6e-47 191.0 203 51.2
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.5e-46 189.5 210 53.3
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 3.3e-46 189.1 221 49.8
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 7.2e-46 188.0 207 52.7
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 9.5e-46 187.6 218 50.5
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 1.2e-45 187.2 203 52.2
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 2.8e-45 186.0 206 49.0
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 2.8e-45 186.0 238 50.0
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 6.1e-45 184.9 213 52.1
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 8.0e-45 184.5 199 52.3
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 2.3e-44 183.0 190 51.6
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 4.0e-44 182.2 203 51.7
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 5.2e-44 181.8 213 52.1
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 8.9e-44 181.0 208 51.4
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 1.5e-43 180.3 199 49.7
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 1.5e-43 180.3 203 49.8
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 5.7e-43 178.3 250 46.8
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 5.7e-43 178.3 208 51.4
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 7.5e-43 177.9 213 50.2
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 9.8e-43 177.6 215 49.8
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 1.3e-42 177.2 197 51.3
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.7e-42 176.8 208 52.9
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 2.2e-42 176.4 243 47.7
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 2.2e-42 176.4 211 49.3
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 2.8e-42 176.0 211 48.8
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 6.3e-42 174.9 202 49.0
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.3e-42 174.9 173 54.9
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.1e-41 174.1 211 49.8
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 1.1e-41 174.1 208 50.5
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 1.1e-41 174.1 208 50.5
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 2.4e-41 172.9 208 49.0
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 2.4e-41 172.9 208 49.0
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 2.4e-41 172.9 208 49.0
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 3.1e-41 172.6 188 52.1
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 4.1e-41 172.2 209 51.7
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 4.1e-41 172.2 209 51.7
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 5.4e-41 171.8 217 46.1
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 5.4e-41 171.8 208 51.0
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 5.4e-41 171.8 208 51.0
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 5.4e-41 171.8 208 51.0
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 7.0e-41 171.4 208 48.6
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 7.0e-41 171.4 211 49.3
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 9.2e-41 171.0 212 50.9
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.2e-40 170.6 203 48.3
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.2e-40 170.6 210 51.0
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 2.7e-40 169.5 215 46.0
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 4.5e-40 168.7 208 51.9
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 5.9e-40 168.3 197 50.8
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 7.8e-40 167.9 215 49.8
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 7.8e-40 167.9 215 49.8
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 7.8e-40 167.9 215 49.8
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 2.3e-39 166.4 209 50.2
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 2.3e-39 166.4 215 49.3
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 2.3e-39 166.4 215 49.3
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 2.9e-39 166.0 182 51.6
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 5.0e-39 165.2 208 45.7
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 8.6e-39 164.5 166 56.0
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.6e-38 161.8 166 55.4
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 7.3e-38 161.4 188 49.5
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 4.4e-35 152.1 188 44.7
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 7.0e-33 144.8 252 40.5
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 9.2e-33 144.4 170 50.6
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 2.3e-31 139.8 150 54.0
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.9e-31 139.0 196 41.8
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 6.6e-31 138.3 259 39.0
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 6.2e-29 131.7 189 41.8
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 8.0e-29 131.3 178 45.5
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.3e-28 129.8 202 41.6
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 2.6e-27 126.3 133 48.1
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 4.4e-27 125.6 193 40.4
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 5.8e-27 125.2 184 44.0
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 9.8e-27 124.4 198 40.9
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.7e-26 123.6 173 42.8
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.7e-26 123.6 206 37.9
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.2e-24 117.5 128 54.7
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 1.2e-24 117.5 228 37.3
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.5e-24 115.9 173 41.0
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 6.6e-23 111.7 97 54.6
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 5.6e-22 108.6 195 38.5
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 5.6e-22 108.6 202 35.6
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 4.7e-21 105.5 102 53.9
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 1.1e-20 104.4 100 56.0
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 4.0e-20 102.4 131 51.1
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 2.0e-19 100.1 199 34.2
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.7e-18 97.1 164 39.0
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 2.9e-18 96.3 164 38.4
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.9e-18 96.3 202 35.1
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 1.1e-17 94.4 78 61.5
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 7.1e-17 91.7 165 36.4
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 9.2e-17 91.3 168 36.3
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 9.2e-17 91.3 168 36.3
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 1.2e-16 90.9 166 36.7
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 1.2e-16 90.9 166 36.7
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 1.2e-16 90.9 166 36.7
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 2.1e-16 90.1 192 33.9
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 7.8e-16 88.2 94 52.1
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.3e-15 87.4 167 35.9
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 5.1e-15 85.5 94 48.9
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 1.1e-14 84.3 169 34.3
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 1.5e-14 84.0 243 30.5
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.8e-12 77.0 165 35.2
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 3.4e-11 72.8 178 31.5
Nn5g27936 Nelumbo nucifera HOM05D004006 ORTHO05D004585 8.4e-10 68.2 119 37.8
Ah.05g171110 Amaranthus hybridus HOM05D004006 ORTHO05D004585 2.7e-08 63.2 73 47.9
Zm00001eb076410 Zea mays HOM05D004006 ORTHO05D004585 4.6e-08 62.4 92 41.3


User provided reference genes

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