Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 2.1e-219 765.4 385 100.0
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 2.9e-200 701.8 383 90.9
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 1.2e-198 696.4 380 92.1
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 1.6e-198 696.0 383 90.3
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 8.6e-197 690.3 389 88.9
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 1.9e-196 689.1 398 87.2
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 5.6e-196 687.6 388 88.7
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 9.6e-196 686.8 383 89.3
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 9.6e-196 686.8 389 88.2
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 1.6e-195 686.0 382 89.3
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 4.7e-195 684.5 383 89.3
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 1.4e-194 682.9 380 88.9
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 1.4e-194 682.9 371 91.9
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 4.0e-194 681.4 380 88.7
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 6.8e-194 680.6 381 87.9
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 3.4e-193 678.3 380 88.7
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 5.8e-193 677.6 383 87.5
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 7.6e-193 677.2 380 88.2
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 7.6e-193 677.2 384 88.3
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 2.2e-192 675.6 389 87.4
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 2.9e-192 675.2 382 88.0
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 6.4e-192 674.1 389 87.1
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 3.2e-191 671.8 381 87.9
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 2.1e-190 669.1 383 88.0
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 3.5e-190 668.3 382 86.6
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 3.5e-190 668.3 380 87.4
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 1.0e-189 666.8 383 87.2
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 1.3e-189 666.4 411 83.0
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 1.7e-189 666.0 385 87.5
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 2.3e-189 665.6 379 87.1
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 3.0e-189 665.2 369 88.9
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 6.6e-189 664.1 383 87.2
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 8.7e-189 663.7 383 86.9
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 1.1e-188 663.3 380 86.6
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 1.5e-188 662.9 383 86.7
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 1.5e-188 662.9 383 86.7
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 2.5e-188 662.1 380 86.6
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 2.5e-188 662.1 383 87.5
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 3.3e-188 661.8 369 88.6
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 3.3e-188 661.8 369 88.6
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 3.3e-188 661.8 380 86.8
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 7.3e-188 660.6 383 86.4
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 7.3e-188 660.6 371 88.9
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 1.3e-187 659.8 368 88.9
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 1.3e-187 659.8 369 88.3
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 2.1e-187 659.1 383 85.6
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 6.2e-187 657.5 383 85.9
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 1.1e-186 656.8 383 85.9
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.1e-186 656.8 386 85.8
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 3.1e-186 655.2 381 85.6
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 3.1e-186 655.2 381 86.4
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 4.0e-186 654.8 383 85.4
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 5.3e-186 654.4 411 81.0
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 6.9e-186 654.1 371 87.9
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 6.9e-186 654.1 383 85.9
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 2.2e-184 649.0 402 82.6
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 2.2e-184 649.0 383 84.9
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 8.4e-184 647.1 383 84.6
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 1.4e-183 646.4 369 87.3
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 1.9e-183 646.0 369 87.0
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 1.9e-183 646.0 381 85.0
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.9e-183 646.0 383 84.6
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 2.4e-183 645.6 383 84.3
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 2.4e-183 645.6 383 85.1
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 3.2e-183 645.2 380 86.3
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 3.2e-183 645.2 384 84.1
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 4.2e-183 644.8 382 85.3
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 4.2e-183 644.8 380 85.3
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 5.4e-183 644.4 381 85.3
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 9.3e-183 643.7 383 84.1
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 1.2e-182 643.3 364 88.5
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 1.2e-182 643.3 382 84.6
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 3.5e-182 641.7 381 86.1
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 4.6e-182 641.3 385 83.9
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 6.0e-182 641.0 400 80.8
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 6.0e-182 641.0 364 88.2
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 7.9e-182 640.6 382 84.3
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 5.1e-181 637.9 382 83.5
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 1.5e-180 636.3 385 83.6
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 5.6e-180 634.4 394 82.7
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 1.3e-179 633.3 344 89.2
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 2.8e-179 632.1 385 83.9
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 3.1e-178 628.6 364 85.4
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 9.0e-178 627.1 383 82.5
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 9.0e-178 627.1 383 82.5
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 1.5e-177 626.3 383 82.8
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 4.5e-177 624.8 328 92.4
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 1.3e-176 623.2 401 79.8
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 6.4e-176 620.9 380 83.7
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 7.1e-175 617.5 381 82.2
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 3.7e-171 605.1 381 81.4
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 4.8e-171 604.7 364 83.2
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 8.1e-171 604.0 369 80.8
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 1.4e-170 603.2 381 81.1
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.4e-170 602.4 381 80.6
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 3.1e-170 602.1 364 83.2
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 6.9e-170 600.9 367 80.1
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 1.2e-169 600.1 372 81.7
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.2e-169 600.1 372 81.7
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 3.4e-169 598.6 380 79.5
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 4.5e-169 598.2 389 80.7
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 5.8e-169 597.8 371 80.1
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 4.2e-167 591.7 377 79.6
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 1.6e-166 589.7 368 78.3
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 6.7e-165 584.3 363 79.3
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 8.7e-165 583.9 314 89.5
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 8.7e-165 583.9 398 73.9
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 3.3e-164 582.0 368 77.7
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 3.7e-163 578.6 384 78.4
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 3.1e-162 575.5 387 76.7
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 3.1e-162 575.5 387 76.7
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 6.9e-162 574.3 380 75.8
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 2.3e-157 559.3 380 74.5
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 4.1e-154 548.5 315 86.0
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 3.0e-149 532.3 370 77.8
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 6.7e-149 531.2 282 92.6
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 2.8e-147 525.8 311 83.6
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 8.8e-141 504.2 350 72.3
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 2.2e-139 499.6 268 92.2
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 3.7e-139 498.8 375 67.7
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 4.8e-139 498.4 353 71.7
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 1.4e-138 496.9 353 70.8
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 1.4e-138 496.9 351 71.8
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.0e-136 490.7 330 73.3
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 5.0e-136 488.4 375 67.5
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 2.1e-134 483.0 300 81.3
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 4.7e-134 481.9 343 71.1
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 2.3e-133 479.6 372 67.5
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 2.3e-133 479.6 372 67.5
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 6.7e-133 478.0 375 66.9
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 4.4e-132 475.3 375 66.4
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 1.8e-130 469.9 413 63.0
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 1.4e-122 443.7 275 80.4
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 2.7e-121 439.5 360 61.9
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 2.9e-120 436.0 350 59.7
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 2.8e-118 429.5 302 77.5
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 6.8e-117 424.9 312 67.9
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 2.3e-112 409.8 282 72.0
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 2.1e-110 403.3 224 90.6
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 1.8e-109 400.2 271 76.4
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 1.7e-91 340.5 234 73.5
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 4.4e-76 289.3 193 76.7
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.7e-75 287.3 234 65.4
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 3.8e-67 259.6 249 56.6
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.3e-64 250.4 246 57.3
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 7.4e-63 245.4 183 67.8
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 6.2e-62 242.3 276 48.9
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 5.8e-60 235.7 183 65.6
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 1.4e-58 231.1 149 73.8
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 2.6e-52 210.3 179 60.3
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 1.0e-51 208.4 173 62.4
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 1.4e-50 204.5 311 39.2
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 8.2e-46 188.7 101 86.1
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 3.1e-45 186.8 148 67.6
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 3.4e-44 183.3 172 58.7
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 3.4e-44 183.3 179 56.4
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 7.6e-44 182.2 101 83.2
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 1.7e-43 181.0 104 84.6
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.8e-43 179.9 100 87.0
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 1.5e-39 167.9 100 79.0
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 3.1e-37 160.2 77 94.8
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 3.8e-35 153.3 212 40.6
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 3.8e-35 153.3 135 63.0
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 1.4e-34 151.4 122 67.2
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.6e-33 147.9 76 86.8
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 5.9e-28 129.4 72 88.9
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 3.0e-24 117.1 74 78.4
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 5.7e-23 112.8 182 42.9
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 2.6e-20 104.0 106 54.7
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 4.7e-17 93.2 77 62.3
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 4.7e-17 93.2 77 62.3
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 4.8e-14 83.2 49 81.6
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 1.3e-11 75.1 50 68.0
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.7e-09 67.4 36 88.9
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 1.8e-08 64.7 59 59.3
arahy.Tifrunner.gnm1.ann1.LHV34C Arachis hypogaea HOM05D003910 ORTHO05D004622 2.3e-08 64.3 65 58.5
Sp6g37550 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.6e-07 60.8 52 63.5


User provided reference genes

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